PDB: 1446 件ウェブページステータス検索Chemie searchBIRD

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5MWW	Sigma1.1 domain of sigmaA from Bacillus subtilis 分子名称: RNA polymerase sigma factor SigA 著者 Zachrdla, M, Padrta, P, Rabatinova, A, Sanderova, H, Barvik, I, Krasny, L, Zidek, L. 登録日 2017-01-20 公開日 2017-06-14 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Solution structure of domain 1.1 of the sigma (A) factor from Bacillus subtilis is preformed for binding to the RNA polymerase core. J. Biol. Chem., 292, 2017
2M4V	Mycobacterium tuberculosis RNA polymerase binding protein A (RbpA) and its interactions with sigma factors 分子名称: Putative uncharacterized protein 著者 Bortoluzzi, A, Muskett, F.W, Waters, L.C, Addis, P.W, Rieck, B, Munder, T, Schleier, S, Forti, F, Ghisotti, D, Carr, M.D, O'Hare, H.M. 登録日 2013-02-11 公開日 2013-04-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Mycobacterium tuberculosis RNA polymerase-binding protein A (RbpA) and its interactions with sigma factors. J.Biol.Chem., 288, 2013
7UME	DENV1 SLA top stemloop RNA (DenvTSL) 分子名称: RNA (28-MER) 著者 Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2022-04-06 公開日 2022-07-06 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of the dengue virus RNA promoter. Rna, 28, 2022
7UMD	DENV1 SLA three-way junction RNA (DenvSLAsh) 分子名称: RNA (40-MER) 著者 Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2022-04-06 公開日 2022-07-06 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of the dengue virus RNA promoter. Rna, 28, 2022
7UMC	DENV1 SLA RNA (DenvSLATL) 分子名称: RNA (70-MER) 著者 Sun, Y.T, Varani, G, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2022-04-06 公開日 2022-07-06 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structure of the dengue virus RNA promoter. Rna, 28, 2022
4Y2A	Crystal Structure of Coxsackie Virus B3 3D polymerase in complex with GPC-N114 inhibitor 分子名称: 2,2'-[(4-chlorobenzene-1,2-diyl)bis(oxy)]bis(5-nitrobenzonitrile), 3D polymerase, GLYCEROL, ... 著者 Vives-Adrian, L, Ferrer-Orta, C, Verdaguer, N. 登録日 2015-02-09 公開日 2015-04-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family. Plos Pathog., 11, 2015
4Y3C	I304V 3D polymerase mutant of EMCV 分子名称: 3D polymerase, CHLORIDE ION, GLYCEROL 著者 Verdaguer, N, Ferrer-Orta, C, Vives-Adrian, L. 登録日 2015-02-10 公開日 2015-04-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family. Plos Pathog., 11, 2015
4Y34	Crystal Structure of Coxsackievirus B3 3D polymerase in complex with GPC-N143 分子名称: 2,2'-[(4-fluorobenzene-1,2-diyl)bis(oxy)]bis(5-nitrobenzonitrile), 3D polymerase, GLYCEROL, ... 著者 Vives-Adrian, L, Ferrer-Orta, C, Cerdaguer, N. 登録日 2015-02-10 公開日 2015-04-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family. Plos Pathog., 11, 2015
1F6X	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE 分子名称: RNASE P RNA RIBOZYME, P4 DOMAIN 著者 Schmitz, M, Tinoco Jr, I. 登録日 2000-06-23 公開日 2000-10-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
4WTM	CRYSTAL STRUCTURE OF HCV NS5B GENOTYPE 2A JFH-1 ISOLATE WITH S15G E86Q E87Q C223H V321I MUTATIONS IN COMPLEX WITH RNA TEMPLATE 5'-UAGG, RNA PRIMER 5'-PCC, MN2+, AND UDP 分子名称: CHLORIDE ION, MANGANESE (II) ION, RNA PRIMER CC, ... 著者 Edwards, T.E, Appleby, T.C, Fox III, D. 登録日 2014-10-30 公開日 2015-02-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis for RNA replication by the hepatitis C virus polymerase. Science, 347, 2015
6Z11	Structure of Mycobacterium smegmatis HelD protein in complex with RNA polymerase core - State III, primary channel dis-engaged and active site interfering 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Kouba, T, Koval, T, Krasny, L, Dohnalek, J. 登録日 2020-05-11 公開日 2020-11-04 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 HelD, a helicase-like protein from gram-positive bacteria in complex with RNA polymerase To Be Published
1F6Z	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE 分子名称: RNASE P RNA RIBOZYME, P4 DOMAIN MUTANT 著者 Schmitz, M, Tinoco Jr, I. 登録日 2000-06-24 公開日 2000-10-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7F	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUCTURES 分子名称: RNASE P RNA RIBOZYME, P4 DOMAIN 著者 Schmitz, M, Tinoco Jr, I. 登録日 2000-06-27 公開日 2000-10-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7G	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE, ENSEMBLE OF 17 STRUCTURES 分子名称: RNASE P RNA RIBOZYME, P4 DOMAIN 著者 Schmitz, M, Tinoco Jr, I. 登録日 2000-06-27 公開日 2000-10-09 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
8CRO	Cryo-EM structure of Pyrococcus furiosus transcription elongation complex 分子名称: DNA Non-Template Strand, DNA Template Strand, DNA-directed RNA polymerase subunit Rpo10, ... 著者 Tarau, D.M, Grunberger, F, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. 登録日 2023-03-08 公開日 2024-04-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 2024
6PMJ	Sigm28-transcription initiation complex with specific promoter at the state 2 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Liu, B, Shi, W. 登録日 2019-07-02 公開日 2020-05-13 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.91 Å) 主引用文献 Structural basis of bacterial sigma28-mediated transcription reveals roles of the RNA polymerase zinc-binding domain. Embo J., 39, 2020
6PMI	Sigm28-transcription initiation complex with specific promoter at the state 1 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Liu, B, Shi, W. 登録日 2019-07-02 公開日 2020-05-13 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.86 Å) 主引用文献 Structural basis of bacterial sigma28-mediated transcription reveals roles of the RNA polymerase zinc-binding domain. Embo J., 39, 2020
7EU1	The cryo-EM structure of A. thaliana Pol IV-RDR2 holoenzyme 分子名称: DNA-directed RNA polymerase IV subunit 1, DNA-directed RNA polymerases II and IV subunit 5A, DNA-directed RNA polymerases II, ... 著者 Fang, C.L, Wu, X.X, Huang, K, Zhang, Y. 登録日 2021-05-15 公開日 2021-12-29 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.86 Å) 主引用文献 Pol IV and RDR2: A two-RNA-polymerase machine that produces double-stranded RNA. Science, 374, 2021
7EU0	The cryo-EM structure of A. thaliana Pol IV-RDR2 backtracked complex 分子名称: DNA (33-MER), DNA (5'-D(*CP*TP*GP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*GP*AP*GP*TP*G)-3'), DNA-directed RNA polymerase IV subunit 1, ... 著者 Fang, C.L, Wu, X.X, Huang, K, Zhang, Y. 登録日 2021-05-15 公開日 2021-12-29 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.16 Å) 主引用文献 Pol IV and RDR2: A two-RNA-polymerase machine that produces double-stranded RNA. Science, 374, 2021
8P0J	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex 分子名称: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... 著者 Grimm, C, Jungwirth, S, Fischer, U. 登録日 2023-05-10 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.39 Å) 主引用文献 Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
8P0K	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex, module 2 of capping enzyme mobile 分子名称: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... 著者 Grimm, C, Jungwirth, S, Fischer, U. 登録日 2023-05-10 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.64 Å) 主引用文献 Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
8P0N	Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex shallow conformation 分子名称: DNA-directed RNA polymerase 133 kDa polypeptide, DNA-directed RNA polymerase 147 kDa polypeptide, DNA-directed RNA polymerase 18 kDa subunit, ... 著者 Grimm, C, Jungwirth, S, Fischer, U. 登録日 2023-05-10 公開日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.58 Å) 主引用文献 Cryo EM map and model of the vaccinia RNA polymerase intermediate pre-initiation open promoter complex (CASP target) To Be Published
7M8E	E.coli RNAP-RapA elongation complex 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Shi, W, Liu, B. 登録日 2021-03-29 公開日 2021-08-18 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for activation of Swi2/Snf2 ATPase RapA by RNA polymerase. Nucleic Acids Res., 49, 2021
6YI2	UvrD helicase RNA polymerase interactions are governed by UvrDs carboxy terminal Tudor domain. 分子名称: DNA helicase 著者 Kawale, A.A, Burmann, B.B. 登録日 2020-03-31 公開日 2020-10-21 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 UvrD helicase-RNA polymerase interactions are governed by UvrD's carboxy-terminal Tudor domain. Commun Biol, 3, 2020
4IQZ	The crystal structure of a large insert in RNA polymerase (RpoC) subunit from E. coli 分子名称: DNA-directed RNA polymerase subunit beta', IODIDE ION, SODIUM ION 著者 Bhandari, V, Sugiman-Marangos, S.N, Naushad, H.S, Gupta, R.S, Junop, M.S. 登録日 2013-01-14 公開日 2013-02-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The crystal structure of a large insert in RNA polymerase (RpoC) subunit from E. coli To be Published

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