PDB: 5515 件ウェブページステータス検索Chemie searchBIRD

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3ILO	Crystal structure of E. coli HPPK(D97A) in complex with MgAMPCPP and 6-hydroxymethyl-7,8-dihydropterin 分子名称: 2-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, ... 著者 Blaszczyk, J, Li, Y, Yan, H, Ji, X. 登録日 2009-08-07 公開日 2010-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Structural and functional roles of residues D95 and D97 in E. coli HPPK To be Published
5G3Q	Crystal structure of a hypothetical domain in WNK1 分子名称: WNK1 著者 Pinkas, D.M, Bufton, J.C, Sanvitale, C.E, Bartual, S.G, Adamson, R.J, Krojer, T, Burgess-Brown, N.A, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Bullock, A. 登録日 2016-04-29 公開日 2017-05-31 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.613 Å) 主引用文献 Crystal Structure of a Hypothetical Domain in Wnk1 To be Published
5F7J	Crystal structure of Mutant N87T of adenosine/Methylthioadenosine phosphorylase from Schistosoma mansoni in complex with Adenine 分子名称: ADENINE, Methylthioadenosine phosphorylase, PHOSPHATE ION 著者 Torini, J.R, Brandao-Neto, J, DeMarco, R, Pereira, H.M. 登録日 2015-12-08 公開日 2016-12-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Crystal Structure of Schistosoma mansoni Adenosine Phosphorylase/5'-Methylthioadenosine Phosphorylase and Its Importance on Adenosine Salvage Pathway. PLoS Negl Trop Dis, 10, 2016
5F7Z	Crystal structure of Double Mutant S12T and N87T of Adenosine/Methylthioadenosine Phosphorylase from Schistosoma mansoni in APO Form 分子名称: Methylthioadenosine phosphorylase, PHOSPHATE ION 著者 Torini, J.R, Brandao-Neto, J, DeMarco, R, Pereira, H.M. 登録日 2015-12-08 公開日 2016-12-21 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal Structure of Schistosoma mansoni Adenosine Phosphorylase/5'-Methylthioadenosine Phosphorylase and Its Importance on Adenosine Salvage Pathway. PLoS Negl Trop Dis, 10, 2016
3HSG	Crystal structure of E. coli HPPK(Y53A) in complex with MgAMPCPP 分子名称: ACETATE ION, CHLORIDE ION, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ... 著者 Blaszczyk, J, Li, Y, Yan, H, Ji, X. 登録日 2009-06-10 公開日 2010-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.14 Å) 主引用文献 Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK To be Published
5GLG	The novel function of Osm1 under anaerobic condition in the ER was revealed by crystal structure of Osm1, a soluble fumarate reductase in yeast 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Fumarate reductase 2, SUCCINIC ACID 著者 Park, H.H, Choi, J.Y. 登録日 2016-07-11 公開日 2017-07-12 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Molecular basis of maintaining an oxidizing environment under anaerobiosis by soluble fumarate reductase. Nat Commun, 9, 2018
3HSJ	Crystal structure of E. coli HPPK(N55A) 分子名称: ACETATE ION, GLYCEROL, HPPK 著者 Blaszczyk, J, Li, Y, Yan, H, Ji, X. 登録日 2009-06-10 公開日 2010-06-23 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Pterin-binding site mutation Y53A, N55A or F123A and activity of E. coli HPPK To be Published
3ILJ	Crystal structure of E. coli HPPK(D95A) in complex with MgAMPCPP 分子名称: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, ACETATE ION, CHLORIDE ION, ... 著者 Blaszczyk, J, Li, Y, Yan, H, Ji, X. 登録日 2009-08-07 公開日 2010-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural and functional roles of residues D95 and D97 in E. coli HPPK To be Published
1U5M	Structure of a Chordin-like Cysteine-rich Repeat (VWC module) from Collagen IIA 分子名称: alpha 1 type II collagen isoform 1 著者 O'Leary, J.M, Hamilton, J.m, Deane, C.M, Valeyev, N.V, Sandell, L.J, Downing, A.K. 登録日 2004-07-28 公開日 2004-10-05 最終更新日 2021-10-20 実験手法 SOLUTION NMR 主引用文献 Solution structure and dynamics of a prototypical chordin-like cysteine-rich repeat (von Willebrand Factor type C module) from collagen IIA J.Biol.Chem., 279, 2004
1U1Y	Crystal structure of a complex between WT bacteriophage MS2 coat protein and an F5 aptamer RNA stemloop with 2aminopurine substituted at the-10 position 分子名称: 5'-R(*CP*CP*GP*GP*(2PR)P*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*G)-3', Coat protein 著者 Horn, W.T, Convery, M.A, Stonehouse, N.J, Adams, C.J, Liljas, L, Phillips, S.E, Stockley, P.G. 登録日 2004-07-16 公開日 2004-12-07 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 The crystal structure of a high affinity RNA stem-loop complexed with the bacteriophage MS2 capsid: further challenges in the modeling of ligand-RNA interactions. Rna, 10, 2004
6PWB	Rigid body fitting of flagellin FlaB, and flagellar coiling proteins, FcpA and FcpB, into a 10 Angstrom structure of the asymmetric flagellar filament purified from Leptospira biflexa Patoc WT cells resolved via subtomogram averaging 分子名称: Flagellar coiling protein A (FcpA), Flagellar coiling protein B (FcpB), Flagellin B1 (FlaB1) 著者 Gibson, K.H, Sindelar, C.V, Trajtenberg, F, Buschiazzo, A, San Martin, F, Mechaly, A. 登録日 2019-07-22 公開日 2020-03-25 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (9.83 Å) 主引用文献 An asymmetric sheath controls flagellar supercoiling and motility in the leptospira spirochete. Elife, 9, 2020
7QTB	S1 nuclease from Aspergillus oryzae in complex with cytidine-5'-monophosphate 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Adamkova, K, Koval, T, Kolenko, P, Oestergaard, L.H, Dohnalek, J. 登録日 2022-01-14 公開日 2022-11-09 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.04 Å) 主引用文献 Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects. Acta Crystallogr D Struct Biol, 78, 2022
3LGB	Crystal Structure of the Fe-S Domain of the yeast DNA primase 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA primase large subunit, GLYCEROL, ... 著者 Sauguet, L, Pellegrini, L. 登録日 2010-01-20 公開日 2010-04-21 最終更新日 2011-10-05 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Shared Active Site Architecture between the Large Subunit of Eukaryotic Primase and DNA Photolyase PLOS ONE, 5, 2010
7QTA	S1 nuclease from Aspergillus oryzae in complex with uridine 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Nuclease S1, ... 著者 Adamkova, K, Koval, T, Kolenko, P, Oestergaard, L.H, Dohnalek, J. 登録日 2022-01-14 公開日 2022-11-09 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.06 Å) 主引用文献 Atomic resolution studies of S1 nuclease complexes reveal details of RNA interaction with the enzyme despite multiple lattice-translocation defects. Acta Crystallogr D Struct Biol, 78, 2022
1UO5	Structure Based Engineering of Internal Molecular Surfaces Of Four Helix Bundles 分子名称: CHLORIDE ION, GENERAL CONTROL PROTEIN GCN4, iodobenzene 著者 Yadav, M.K, Redman, J.E, Alvarez-Gutierrez, J.M, Zhang, Y. 登録日 2003-09-15 公開日 2004-10-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides Biochemistry, 44, 2005
1VFG	Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog 分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, RNA (75-MER), poly A polymerase 著者 Tomita, K, Fukai, S, Ishitani, R, Ueda, T, Takeuchi, N, Vassylyev, D.G, Nureki, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-04-13 公開日 2004-08-10 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis for template-independent RNA polymerization. Nature, 430, 2004
1W69	Crystal Structure of Mouse Ribonucleotide Reductase Subunit R2 under Reducing Conditions. A Fully Occupied Dinuclear Iron Cluster and Bound Acetate. 分子名称: ACETIC ACID, FE (II) ION, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 CHAIN 著者 Karlsen, S, Strand, K.R, Kolberg, M, Rohr, A.K, Gorbitz, C.H, Andersson, K.K. 登録日 2004-08-16 公開日 2004-08-26 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structural Studies of Changes in the Native Dinuclear Iron Center of Ribonucleotide Reductase Protein R2 from Mouse J.Biol.Chem., 279, 2004
1W68	Crystal Structure of Mouse Ribonucleotide Reductase Subunit R2 under Oxidizing Conditions. A Fully Occupied Dinuclear Iron Cluster. 分子名称: MU-OXO-DIIRON, RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 CHAIN 著者 Karlsen, S, Strand, K.R, Kolberg, M, Rohr, A.K, Gorbitz, C.H, Andersson, K.K. 登録日 2004-08-16 公開日 2004-08-26 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal Structural Studies of Changes in the Native Dinuclear Iron Center of Ribonucleotide Reductase Protein R2 from Mouse J.Biol.Chem., 279, 2004
3J94	Structure of ATP-bound N-ethylmaleimide sensitive factor determined by single particle cryoelectron microscopy 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Vesicle-fusing ATPase 著者 Zhao, M, Wu, S, Cheng, Y, Brunger, A.T. 登録日 2014-12-05 公開日 2015-01-28 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Mechanistic insights into the recycling machine of the SNARE complex. Nature, 518, 2015
1W26	Trigger Factor in Complex with the Ribosome forms a Molecular Cradle for Nascent Proteins 分子名称: TRIGGER FACTOR 著者 Ferbitz, L, Maier, T, Patzelt, H, Bukau, B, Deuerling, E, Ban, N. 登録日 2004-06-28 公開日 2004-09-02 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Trigger Factor in Complex with the Ribosome Forms a Molecular Cradle for Nascent Proteins Nature, 431, 2004
1WAC	Back-priming mode of Phi6 RNA-dependent RNA polymerase 分子名称: P2 PROTEIN 著者 Laurila, M.R.L, Salgado, P.S, Stuart, D.I, Grimes, J.M, Bamford, D.H. 登録日 2004-10-26 公開日 2005-01-27 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Back-Priming Mode of Phi6 RNA-Dependent RNA Polymerase J.Gen.Virol., 86, 2005
1W5G	An anti-parallel four helix bundle (acetimide modification). 分子名称: GENERAL CONTROL PROTEIN GCN4 著者 Yadav, M.K, Leman, L.J, Stout, C.D, Ghadiri, M.R. 登録日 2004-08-06 公開日 2004-09-24 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.16 Å) 主引用文献 Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides Biochemistry, 44, 2005
1W5I	ABA does not affect topology of pLI. 分子名称: GENERAL CONTROL PROTEIN GCN4 著者 Yadav, M.K, Leman, L.J, Stout, C.D, Ghadiri, M.R. 登録日 2004-08-07 公開日 2004-09-24 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides Biochemistry, 44, 2005
1UKE	UMP/CMP KINASE FROM SLIME MOLD 分子名称: MAGNESIUM ION, P1-(ADENOSINE-5'-P5-(URIDINE-5')PENTAPHOSPHATE, URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE 著者 Scheffzek, K, Kliche, W, Wiesmueller, L, Reinstein, J. 登録日 1998-01-07 公開日 1998-04-29 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of the complex of UMP/CMP kinase from Dictyostelium discoideum and the bisubstrate inhibitor P1-(5'-adenosyl) P5-(5'-uridyl) pentaphosphate (UP5A) and Mg2+ at 2.2 A: implications for water-mediated specificity. Biochemistry, 35, 1996
1UNX	Structure Based Engineering of Internal Molecular Surfaces Of Four Helix Bundles 分子名称: GENERAL CONTROL PROTEIN GCN4 著者 Yadav, M.K, Redman, J.E, Alvarez-Gutierrez, J.M, Zhang, Y, Stout, C.D, Ghadiri, M.R. 登録日 2003-09-15 公開日 2004-10-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure-Based Engineering of Internal Cavities in Coiled-Coil Peptides Biochemistry, 44, 2005

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