PDB: 1732 件ウェブページステータス検索Chemie searchBIRD

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5KL1	Crystal structure of the Pumilio-Nos-hunchback RNA complex 分子名称: Maternal protein pumilio, Protein nanos, RNA (5'-R(*AP*AP*AP*UP*UP*GP*UP*AP*CP*AP*UP*A)-3'), ... 著者 Qiu, C, Hall, T.M.T. 登録日 2016-06-23 公開日 2016-08-17 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.701 Å) 主引用文献 Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio. Elife, 5, 2016
7FIL	The cryo-EM structure of the NTD2 from the X. laevis Nup358 分子名称: Nup358 complex, clamps 著者 Shi, Y, Zhan, X, Huang, G. 登録日 2021-07-31 公開日 2022-06-01 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex. Science, 376, 2022
5KL8	Crystal structure of the Pumilio-Nos-CyclinB RNA complex 分子名称: Maternal protein pumilio, Protein nanos, RNA (5'-R(*UP*AP*UP*UP*UP*GP*UP*AP*AP*UP*U)-3'), ... 著者 Qiu, C, Hall, T.M.T. 登録日 2016-06-23 公開日 2016-08-17 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio. Elife, 5, 2016
7FIK	The cryo-EM structure of the CR subunit from X. laevis NPC 分子名称: MGC154553 protein, MGC83295 protein, MGC83926 protein, ... 著者 Shi, Y, Huang, G, Zhan, X. 登録日 2021-07-31 公開日 2022-11-09 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of the cytoplasmic ring of the Xenopus laevis nuclear pore complex. Science, 376, 2022
5KLA	Crystal structure of the drosophila Pumilio RNA-binding domain in complex with hunchback RNA 分子名称: 1,2-ETHANEDIOL, ACETATE ION, Maternal protein pumilio, ... 著者 Qiu, C, Hall, T.M.T. 登録日 2016-06-23 公開日 2016-08-17 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.14 Å) 主引用文献 Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio. Elife, 5, 2016
8ORQ	Cryo-EM structure of Pyrococcus furiosus apo form RNA polymerase open clamp conformation 分子名称: DNA-directed RNA polymerase subunit Rpo10, DNA-directed RNA polymerase subunit Rpo11, DNA-directed RNA polymerase subunit Rpo12, ... 著者 Tarau, D.M, Reichelt, R, Heiss, F.B, Pilsl, M, Hausner, W, Engel, C, Grohmann, D. 登録日 2023-04-17 公開日 2024-04-24 最終更新日 2024-06-19 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis of archaeal RNA polymerase transcription elongation and Spt4/5 recruitment. Nucleic Acids Res., 52, 2024
3QQC	Crystal structure of archaeal Spt4/5 bound to the RNAP clamp domain 分子名称: DNA-directed RNA polymerase subunit b, DNA-directed RNA polymerase subunit a', DNA-directed RNA polymerase subunit A'', ... 著者 Martinez-Rucobo, F.W. 登録日 2011-02-15 公開日 2011-03-23 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. Embo J., 30, 2011
2JPP	Structural basis of RsmA/CsrA RNA recognition: Structure of RsmE bound to the Shine-Dalgarno sequence of hcnA mRNA 分子名称: RNA (5'-R(*GP*GP*GP*CP*UP*UP*CP*AP*CP*GP*GP*AP*UP*GP*AP*AP*GP*CP*CP*C)-3'), Translational repressor 著者 Schubert, M, Lapouge, K, Duss, O, Oberstrass, F.C, Jelesarov, I, Haas, D, Allain, F.H.-T. 登録日 2007-05-21 公開日 2007-08-21 最終更新日 2023-12-20 実験手法 SOLUTION NMR 主引用文献 Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA Nat.Struct.Mol.Biol., 14, 2007
1RXZ	C-terminal region of A. fulgidus FEN-1 complexed with A. fulgidus PCNA 分子名称: DNA polymerase sliding clamp, Flap structure-specific endonuclease 著者 Chapados, B.R, Hosfield, D.J, Han, S, Qiu, J, Yelent, B, Shen, B, Tainer, J.A. 登録日 2003-12-18 公開日 2004-01-27 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair Cell(Cambridge,Mass.), 116, 2004
3TXM	Crystal structure of Rpn6 from Drosophila melanogaster, Gd(3+) complex 分子名称: 26S proteasome regulatory complex subunit p42B, GADOLINIUM ION, SULFATE ION 著者 Pathare, G.R, Bracher, A. 登録日 2011-09-23 公開日 2011-12-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The proteasomal subunit Rpn6 is a molecular clamp holding the core and regulatory subcomplexes together. Proc.Natl.Acad.Sci.USA, 109, 2012
6S1C	P3221 crystal form of the Ctf18-1-8/Pol2(1-528) complex 分子名称: Chromosome transmission fidelity protein 18, Chromosome transmission fidelity protein 8, DNA polymerase epsilon catalytic subunit A, ... 著者 Grabarczyk, D.B. 登録日 2019-06-18 公開日 2020-07-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (6.1 Å) 主引用文献 Ctf18-RFC and DNA Pol ε form a stable leading strand polymerase/clamp loader complex required for normal and perturbed DNA replication. Nucleic Acids Res., 48, 2020
3TXN	Crystal structure of Rpn6 from Drosophila melanogaster, native data 分子名称: 26S proteasome regulatory complex subunit p42B, GLYCEROL, SULFATE ION 著者 Pathare, G.R, Bracher, A. 登録日 2011-09-23 公開日 2011-12-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.496 Å) 主引用文献 The proteasomal subunit Rpn6 is a molecular clamp holding the core and regulatory subcomplexes together. Proc.Natl.Acad.Sci.USA, 109, 2012
6S2F	Cryo-EM structure of Ctf18-1-8 in complex with the catalytic domain of DNA polymerase epsilon (Class 2) 分子名称: Chromosome transmission fidelity protein 18, Chromosome transmission fidelity protein 8, DNA polymerase epsilon catalytic subunit A, ... 著者 Grabarczyk, D.B, Song, B. 登録日 2019-06-20 公開日 2020-07-08 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Ctf18-RFC and DNA Pol ε form a stable leading strand polymerase/clamp loader complex required for normal and perturbed DNA replication. Nucleic Acids Res., 48, 2020
6S2E	Cryo-EM structure of Ctf18-1-8 in complex with the catalytic domain of DNA polymerase epsilon 分子名称: Chromosome transmission fidelity protein 18, Chromosome transmission fidelity protein 8, DNA polymerase epsilon catalytic subunit A, ... 著者 Grabarczyk, D.B, Song, B. 登録日 2019-06-20 公開日 2020-07-08 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Ctf18-RFC and DNA Pol ε form a stable leading strand polymerase/clamp loader complex required for normal and perturbed DNA replication. Nucleic Acids Res., 48, 2020
7AIB	MutS-MutL in clamp state 分子名称: DNA (30-MER), DNA mismatch repair protein MutL, DNA mismatch repair protein MutS, ... 著者 Fernandez-Leiro, R, Bhairosing-Kok, D, Sixma, T.K, Lamers, M.H. 登録日 2020-09-26 公開日 2021-03-31 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 The selection process of licensing a DNA mismatch for repair. Nat.Struct.Mol.Biol., 28, 2021
6KNC	PolD-PCNA-DNA (form B) 分子名称: DNA polymerase D DP2 (DNA polymerase II large) subunit, DNA polymerase II small subunit, DNA polymerase sliding clamp 1, ... 著者 Mayanagi, K, Oki, K, Miyazaki, N, Ishino, S, Yamagami, T, Iwasaki, K, Kohda, D, Morikawa, K, Shirai, T, Ishino, Y. 登録日 2019-08-05 公開日 2020-08-05 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (9.3 Å) 主引用文献 Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy. Bmc Biol., 18, 2020
7AUU	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1-nose mutant in complex with InsP6 分子名称: Diphosphoinositol polyphosphate phosphohydrolase DDP1,Diphosphoinositol polyphosphate phosphohydrolase DDP1, INOSITOL HEXAKISPHOSPHATE, MAGNESIUM ION 著者 Marquez-Monino, M.A, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021
7AUO	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with PA-InsP8 分子名称: Diphosphoinositol polyphosphate phosphohydrolase DDP1, {[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(2-oxoethane-2,1-diyl)]}bis(phosphonic acid) 著者 Marquez-Monino, M.A, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021
7AUT	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 mutation K63A 分子名称: CHLORIDE ION, Diphosphoinositol polyphosphate phosphohydrolase DDP1, MAGNESIUM ION 著者 Marquez-Monino, M.A, Ortega-Garcia, R, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021
7AUL	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with 5-InsP7 in presence of Mg 分子名称: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, ACETATE ION, Diphosphoinositol polyphosphate phosphohydrolase DDP1, ... 著者 Marquez-Monino, M.A, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021
7AUN	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with PCP-InsP8 分子名称: Diphosphoinositol polyphosphate phosphohydrolase DDP1, MAGNESIUM ION, {[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid) 著者 Marquez-Monino, M.A, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021
7AUR	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with AMP-PNP 分子名称: CHLORIDE ION, Diphosphoinositol polyphosphate phosphohydrolase DDP1, MAGNESIUM ION, ... 著者 Marquez-Monino, M.A, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021
7AUK	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with 5-InsP7 分子名称: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, Diphosphoinositol polyphosphate phosphohydrolase DDP1 著者 Marquez-Monino, M.A, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021
7AUP	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with PCP-InsP7 分子名称: Diphosphoinositol polyphosphate phosphohydrolase DDP1, MAGNESIUM ION, [oxidanyl-[(2~{S},3~{S},5~{R},6~{S})-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methylphosphonic acid 著者 Marquez-Monino, M.A, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021
7AUJ	Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 mutation E80Q in complex with 1-InsP7 分子名称: (1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate, Diphosphoinositol polyphosphate phosphohydrolase DDP1, MAGNESIUM ION 著者 Marquez-Monino, M.A, Gonzalez, B. 登録日 2020-11-03 公開日 2021-05-19 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv, 7, 2021

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