PDB: 5653 件ウェブページステータス検索Chemie searchBIRD

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2WV8	Complex of human dihydroorotate dehydrogenase with the inhibitor 221290 分子名称: 2-ACETAMIDO-5-(4-PHENYLPHENYL)BENZOIC ACID, ACETATE ION, DECYLAMINE-N,N-DIMETHYL-N-OXIDE, ... 著者 Walse, B, Svensson, B, Fritzson, I, Dahlberg, L, Wellmar, U, Al-Karadaghi, S. 登録日 2009-10-15 公開日 2010-08-25 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Inhibition of Human Dhodh by 4-Hydroxycoumarins, Fenamic Acids, and N-(Alkylcarbonyl)Anthranilic Acids Identified by Structure-Guided Fragment Selection. Chemmedchem, 5, 2010
8JYT	Ancestral imine reducatase N560 分子名称: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ancestra imine reductase 著者 Zhu, X.X. 登録日 2023-07-03 公開日 2023-10-11 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 The structure of ancestral imine reductase N560. To Be Published
5FPO	Structure of Bacterial DNA Ligase with small-molecule ligand 1H- indazol-7-amine (AT4213) in an alternate binding site. 分子名称: 1H-indazol-7-amine, DNA LIGASE 著者 Jhoti, H, Ludlow, R.F, Pathuri, P, Saini, H.K, Tickle, I.J, Tisi, D, Verdonk, M, Williams, P.A. 登録日 2015-12-02 公開日 2015-12-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA, 112, 2015
1ICO	SOLUTION STRUCTURE OF DESIGNED BETA-SHEET MINI-PROTEIN TH10BOX 分子名称: TH10BOX 著者 Ottesen, J.J, Imperiali, B. 登録日 2001-04-02 公開日 2001-04-11 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Design of a discretely folded mini-protein motif with predominantly beta-structure. Nat.Struct.Biol., 8, 2001
1YOD	Crystal structure of a water soluble analog of phospholamban 分子名称: water-solublized phospholamban 著者 Slovic, A.M, Stayrook, S.E, North, B, DeGrado, W.F. 登録日 2005-01-27 公開日 2005-04-19 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 X-ray structure of a water-soluble analog of the membrane protein phospholamban: sequence determinants defining the topology of tetrameric and pentameric coiled coils. J.Mol.Biol., 348, 2005
1YT6	NMR structure of peptide SD 分子名称: peptide SD 著者 Murata, T, Hemmi, H, Nakamura, S, Shimizu, K, Suzuki, Y, Yamaguchi, I. 登録日 2005-02-10 公開日 2005-09-27 最終更新日 2022-03-02 実験手法 SOLUTION NMR 主引用文献 Structure, epitope mapping, and docking simulation of a gibberellin mimic peptide as a peptidyl mimotope for a hydrophobic ligand. Febs J., 272, 2005
5FPR	Structure of Bacterial DNA Ligase with small-molecule ligand pyrimidin-2-amine (AT371) in an alternate binding site. 分子名称: DNA LIGASE, PYRIMIDIN-2-AMINE, SULFATE ION 著者 Jhoti, H, Ludlow, R.F, Pathuri, P, Saini, H.K, Tickle, I.J, Tisi, D, Verdonk, M, Williams, P.A. 登録日 2015-12-02 公開日 2015-12-16 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Detection of Secondary Binding Sites in Proteins Using Fragment Screening. Proc.Natl.Acad.Sci.USA, 112, 2015
6Z0C	Structure of in silico modelled artificial Maquette-3 protein 分子名称: Maquette-3, POTASSIUM ION 著者 Baumgart, M, Roepke, M, Muehlbauer, M.E, Asami, S, Mader, S.L, Fredriksson, K, Groll, M, Gamiz-Hernandez, A.P, Kaila, V.R.I. 登録日 2020-05-08 公開日 2021-03-17 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Design of buried charged networks in artificial proteins Nat Commun, 12, 2021
5MFD	Designed armadillo repeat protein YIIIM''6AII in complex with pD_(KR)5 分子名称: CALCIUM ION, Capsid decoration protein,pD_(KR)5, YIIIM''6AII 著者 Hansen, S, Kiefer, J, Madhurantakam, C, Mittl, P, Plueckthun, A. 登録日 2016-11-18 公開日 2017-07-19 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structures of designed armadillo repeat proteins binding to peptides fused to globular domains. Protein Sci., 26, 2017
6NHT	Single particle reconstruction of the symmetric core an engineered protein scaffold 分子名称: DARP14 - Subunit A with DARPin, DARP14 - Subunit B 著者 Liu, Y, Huynh, D, Yeates, T.O. 登録日 2018-12-23 公開日 2019-05-08 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold. Nat Commun, 10, 2019
5LEM	Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_11_3G124 in complex with Maltose-binding Protein and Green Fluorescent Protein 分子名称: DD_Off7_11_3G124, Green fluorescent protein, Maltose-binding periplasmic protein 著者 Batyuk, A, Wu, Y, Mittl, P.R, Plueckthun, A. 登録日 2016-06-30 公開日 2017-08-02 最終更新日 2019-10-16 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Rigidly connected multispecific artificial binders with adjustable geometries. Sci Rep, 7, 2017
7OGP	Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase - class including clamp 分子名称: DNA-directed RNA polymerase, PHIKZ055, PHIKZ068, ... 著者 de Martin Garrido, N, Lai Wan Loong, Y.T.E, Yakunina, M, Aylett, C.H.S. 登録日 2021-05-07 公開日 2021-07-07 最終更新日 2023-11-22 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structure of the bacteriophage PhiKZ non-virion RNA polymerase. Nucleic Acids Res., 49, 2021
7OGR	Structure of the apo-state of the bacteriophage PhiKZ non-virion RNA polymerase 分子名称: DNA-directed RNA polymerase, PHIKZ055, PHIKZ068, ... 著者 de Martin Garrido, N, Lai Wan Loong, Y.T.E, Yakunina, M, Aylett, C.H.S. 登録日 2021-05-07 公開日 2021-07-07 最終更新日 2023-11-22 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structure of the bacteriophage PhiKZ non-virion RNA polymerase. Nucleic Acids Res., 49, 2021
6NHV	Single particle reconstruction of DARPin and its bound GFP on a symmetric scaffold 分子名称: DARP14 - Subunit B, Subunit A-DARPin, superfolder GFP 著者 Liu, Y, Huynh, D, Yeates, T.O. 登録日 2018-12-24 公開日 2019-05-08 最終更新日 2019-11-27 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A 3.8 angstrom resolution cryo-EM structure of a small protein bound to an imaging scaffold. Nat Commun, 10, 2019
1XOF	Heterooligomeric Beta Beta Alpha Miniprotein 分子名称: BBAhetT1 著者 Ali, M.H, Taylor, C.M, Grigoryan, G, Allen, K.N, Imperiali, B, Keating, A.E. 登録日 2004-10-06 公開日 2005-02-01 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Design of a Heterospecific, Tetrameric, 21-Residue Miniprotein with Mixed alpha/beta Structure. Structure, 13, 2005
5MFE	Designed armadillo repeat protein YIIIM5AII in complex with (RR)4 peptide 分子名称: (RR)4, 1,2-ETHANEDIOL, CALCIUM ION, ... 著者 Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A. 登録日 2016-11-18 公開日 2017-09-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol., 201, 2018
5MFM	Designed armadillo repeat protein peptide fusion YIIIM6AII_GS11_(KR)5 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, Importin subunit alpha, ... 著者 Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A. 登録日 2016-11-18 公開日 2017-09-13 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol., 201, 2018
1LB7	IGF-F1-1, A PEPTIDE ANTAGONIST OF IGF-1 分子名称: IGF-1 ANTAGONIST F1-1 著者 Deshayes, K, Schaffer, M.L, Skelton, N.J, Nakamura, G.R, Kadkhodayan, S, Sidhu, S.S. 登録日 2002-04-02 公開日 2002-06-19 最終更新日 2022-02-23 実験手法 SOLUTION NMR 主引用文献 Rapid identification of small binding motifs with high-throughput phage display: discovery of peptidic antagonists of IGF-1 function. Chem.Biol., 9, 2002
5MFG	Designed armadillo repeat protein YIIIM5AII in complex with peptide (RR)4 分子名称: (RR)4, CALCIUM ION, YIIIM5AII 著者 Hansen, S, Ernst, P, Reichen, C, Ewald, C, Mittl, P, Plueckthun, A. 登録日 2016-11-18 公開日 2017-09-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 Curvature of designed armadillo repeat proteins allows modular peptide binding. J. Struct. Biol., 201, 2018
8OT7	Crystal structure of an 8-repeat consensus TPR superhelix with Barium 分子名称: BARIUM ION, Consensus tetratricopeptide repeat protein 著者 Liutkus, M, Rojas, A.L, Cortajarena, A.L. 登録日 2023-04-20 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Diverse crystalline protein scaffolds through metal-dependent polymorphism. Protein Sci., 33, 2024
1Y47	Structural studies of designed alpha-helical hairpins 分子名称: CADMIUM ION, dueferri (DF2) 著者 Lahr, S.J, Engel, D.E, Stayrook, S.E, Maglio, O, North, B, Geremia, S, Lombardi, A, DeGrado, W.F. 登録日 2004-11-30 公開日 2005-03-22 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Analysis and design of turns in alpha-helical hairpins J.Mol.Biol., 346, 2005
5ORQ	Crystal structure of designed cPPR-Telo1 in complex with ssDNA 分子名称: DNA (5'-D(P*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), cPPR-Telo1 著者 Spahr, H, Rackham, O. 登録日 2017-08-16 公開日 2018-06-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Modular ssDNA binding and inhibition of telomerase activity by designer PPR proteins. Nat Commun, 9, 2018
2AF5	2.5A X-ray Structure of Engineered OspA protein 分子名称: Engineered Outer Surface Protein A (OspA) with the inserted two beta-hairpins 著者 Makabe, K, Mcelheny, D, Tereshko, V, Hilyard, A, Koide, A, Koide, S. 登録日 2005-07-25 公開日 2006-08-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Atomic structures of peptide self-assembly mimics. Proc.Natl.Acad.Sci.Usa, 103, 2006
1YYJ	The NMR solution structure of a redesigned apocytochrome b562:Rd-apocyt b562 分子名称: redesigned apocytochrome B562 著者 Feng, H, Takei, J, Lipsitz, R, Tjandra, N, Bai, Y, Berkeley Structural Genomics Center (BSGC) 登録日 2005-02-25 公開日 2005-08-25 最終更新日 2023-09-27 実験手法 SOLUTION NMR 主引用文献 Specific non-native hydrophobic interactions in a hidden folding intermediate: implications for protein folding Biochemistry, 42, 2003
1YWT	Crystal structure of the human sigma isoform of 14-3-3 in complex with a mode-1 phosphopeptide 分子名称: 14-3-3 protein sigma, CALCIUM ION, synthetic optimal phosphopeptide (mode-1) 著者 Wilker, E.W, Grant, R.A, Artim, S.C, Yaffe, M.B. 登録日 2005-02-18 公開日 2005-03-01 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 A structural basis for 14-3-3sigma functional specificity. J.Biol.Chem., 280, 2005

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