PDB: 1671 件ウェブページステータス検索Chemie searchBIRD

---

7RPX	Archaeal DNA ligase and heterotrimeric PCNA in complex with end-joined DNA 分子名称: DNA ligase, DNA polymerase sliding clamp 1, DNA polymerase sliding clamp 2, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-04 公開日 2021-11-17 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
1CZD	CRYSTAL STRUCTURE OF THE PROCESSIVITY CLAMP GP45 FROM BACTERIOPHAGE T4 分子名称: DNA POLYMERASE ACCESSORY PROTEIN G45 著者 Moarefi, I, Jeruzalmi, D, Turner, J, O'Donnell, M, Kuriyan, J. 登録日 1999-09-02 公開日 2000-03-03 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage. J.Mol.Biol., 296, 2000
5KL1	Crystal structure of the Pumilio-Nos-hunchback RNA complex 分子名称: Maternal protein pumilio, Protein nanos, RNA (5'-R(*AP*AP*AP*UP*UP*GP*UP*AP*CP*AP*UP*A)-3'), ... 著者 Qiu, C, Hall, T.M.T. 登録日 2016-06-23 公開日 2016-08-17 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.701 Å) 主引用文献 Drosophila Nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of Pumilio. Elife, 5, 2016
2HII	heterotrimeric PCNA sliding clamp 分子名称: PCNA1 (SSO0397), PCNA2 (SSO1047), PCNA3 (SSO0405) 著者 Pascal, J.M, Tsodikov, O.V, Ellenberger, T. 登録日 2006-06-29 公開日 2006-11-07 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (2.79 Å) 主引用文献 A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
2HIK	heterotrimeric PCNA sliding clamp 分子名称: PCNA1 (SSO0397), PCNA2 (SSO1047), PCNA3 (SSO0405) 著者 Pascal, J.M, Tsodikov, O.V, Ellenberger, T. 登録日 2006-06-29 公開日 2006-11-07 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006
2IO4	Crystal structure of PCNA12 dimer from Sulfolobus solfataricus. 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, DNA polymerase sliding clamp B, ... 著者 Hlinkova, V, Ling, H. 登録日 2006-10-09 公開日 2008-04-08 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening. Acta Crystallogr.,Sect.D, 64, 2008
2NTI	Crystal structure of PCNA123 heterotrimer. 分子名称: 2,5,8,11,14,17,20,23-OCTAOXAPENTACOSAN-25-OL, BROMIDE ION, DNA polymerase sliding clamp A, ... 著者 Hlinkova, V, Ling, H. 登録日 2006-11-07 公開日 2007-12-18 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening. Acta Crystallogr.,Sect.D, 64, 2008
2IZO	Structure of an Archaeal PCNA1-PCNA2-FEN1 Complex 分子名称: DNA POLYMERASE SLIDING CLAMP B, DNA POLYMERASE SLIDING CLAMP C, FLAP STRUCTURE-SPECIFIC ENDONUCLEASE, ... 著者 Dore, A.S, Kilkenny, M.L, Roe, S.M, Pearl, L.H. 登録日 2006-07-25 公開日 2006-09-06 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of an Archaeal PCNA1-PCNA2-Fen1 Complex: Elucidating PCNA Subunit and Client Enzyme Specificity. Nucleic Acids Res., 34, 2006
4MJR	E. coli sliding clamp in complex with (S)-Carprofen 分子名称: (2S)-2-(6-chloro-9H-carbazol-2-yl)propanoic acid, CALCIUM ION, CHLORIDE ION, ... 著者 Yin, Z, Oakley, A.J. 登録日 2013-09-04 公開日 2013-09-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 DNA replication is the target for the antibacterial effects of nonsteroidal anti-inflammatory drugs. Chem.Biol., 21, 2014
4MJP	E. coli sliding clamp in complex with (R)-Vedaprofen 分子名称: (2R)-2-(4-cyclohexylnaphthalen-1-yl)propanoic acid, CALCIUM ION, CHLORIDE ION, ... 著者 Yin, Z, Oakley, A.J. 登録日 2013-09-04 公開日 2013-09-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.855 Å) 主引用文献 DNA replication is the target for the antibacterial effects of nonsteroidal anti-inflammatory drugs. Chem.Biol., 21, 2014
4MJQ	E. coli sliding clamp in complex with Bromfenac 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... 著者 Yin, Z, Oakley, A.J. 登録日 2013-09-04 公開日 2013-09-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 DNA replication is the target for the antibacterial effects of nonsteroidal anti-inflammatory drugs. Chem.Biol., 21, 2014
2IX2	Crystal structure of the heterotrimeric PCNA from Sulfolobus solfataricus 分子名称: DNA POLYMERASE SLIDING CLAMP A, DNA POLYMERASE SLIDING CLAMP B, DNA POLYMERASE SLIDING CLAMP C 著者 Williams, G.J, Johnson, K, McMahon, S.A, Carter, L, Oke, M, Liu, H, Taylor, G.L, White, M.F, Naismith, J.H. 登録日 2006-07-05 公開日 2006-10-04 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of the Heterotrimeric PCNA from Sulfolobus Solfataricus. Acta Crystallogr.,Sect.F, 62, 2006
2IJX	Crystal structure of PCNA3 monomer from Sulfolobus solfataricus. 分子名称: 1,2-ETHANEDIOL, DNA polymerase sliding clamp A 著者 Hlinkova, V, Ling, H. 登録日 2006-10-01 公開日 2007-10-16 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening. Acta Crystallogr.,Sect.D, 64, 2008
5TJG	Thermus aquaticus delta1.1-sigmaA holoenzyme/downstream-fork promoter complex with an open clamp 分子名称: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*A)-3'), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... 著者 Darst, S.A, Bae, B. 登録日 2016-10-04 公開日 2017-06-21 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 RNA polymerase motions during promoter melting. Science, 356, 2017
3AIX	Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (I222) 分子名称: DNA polymerase sliding clamp B, DNA polymerase sliding clamp C, SULFATE ION 著者 Kawai, A, Higuchi, S, Miyamoto, S. 登録日 2010-05-18 公開日 2011-05-18 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex J.Struct.Biol., 174, 2011
3AIZ	Crystal structure of PCNA2-PCNA3 complex from Sulfolobus tokodaii (P21212) 分子名称: DNA polymerase sliding clamp B, DNA polymerase sliding clamp C, SULFATE ION 著者 Kawai, A, Higuchi, S, Miyamoto, S. 登録日 2010-05-18 公開日 2011-05-18 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 A novel heterotetrameric structure of the crenarchaeal PCNA2-PCNA3 complex J.Struct.Biol., 174, 2011
8UI8	Cryo-EM map of human clamp-clamp loader ATAD5-RFC-two PCNAs complex in intermediate state 3 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase family AAA domain-containing protein 5, MAGNESIUM ION, ... 著者 Wang, F, He, Q, Li, H. 登録日 2023-10-10 公開日 2024-05-29 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 The human ATAD5 has evolved unique structural elements to function exclusively as a PCNA unloader. Nat.Struct.Mol.Biol., 2024
8UI9	Cryo-EM map of human clamp-clamp loader ATAD5-RFC-cracked PCNA complex in intermediate state 2 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase family AAA domain-containing protein 5, MAGNESIUM ION, ... 著者 Wang, F, He, Q, Li, H. 登録日 2023-10-10 公開日 2024-05-29 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 The human ATAD5 has evolved unique structural elements to function exclusively as a PCNA unloader. Nat.Struct.Mol.Biol., 2024
8UII	Cryo-EM map of human clamp-clamp loader ATAD5-RFC-closed PCNA complex in intermediate state 1 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase family AAA domain-containing protein 5, MAGNESIUM ION, ... 著者 Wang, F, He, Q, Li, H. 登録日 2023-10-10 公開日 2024-05-29 最終更新日 2024-06-26 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 The human ATAD5 has evolved unique structural elements to function exclusively as a PCNA unloader. Nat.Struct.Mol.Biol., 2024
5AGU	The sliding clamp of Mycobacterium tuberculosis in complex with a natural product. 分子名称: (R,R)-2,3-BUTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA POLYMERASE III SUBUNIT BETA, ... 著者 Lukat, P, Kling, A, Heinz, D.W, Mueller, R. 登録日 2015-02-03 公開日 2015-06-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.173 Å) 主引用文献 Antibiotics. Targeting Dnan for Tuberculosis Therapy Using Novel Griselimycins. Science, 348, 2015
5AGV	The sliding clamp of Mycobacterium tuberculosis in complex with a natural product. 分子名称: (R,R)-2,3-BUTANEDIOL, CALCIUM ION, CYCLOHEXYL GRISELIMYCIN, ... 著者 Lukat, P, Kling, A, Heinz, D.W, Mueller, R. 登録日 2015-02-03 公開日 2015-06-03 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Antibiotics. Targeting Dnan for Tuberculosis Therapy Using Novel Griselimycins. Science, 348, 2015
3Q4J	Structure of a small peptide ligand bound to E.coli DNA sliding clamp 分子名称: DNA polymerase III subunit beta, peptide ligand 著者 Wolff, P, Olieric, V, Briand, J.P, Chaloin, O, Dejaegere, A, Dumas, P, Ennifar, E, Guichard, G, Wagner, J, Burnouf, D. 登録日 2010-12-23 公開日 2011-12-28 最終更新日 2013-03-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure-based design of short peptide ligands binding onto the E. coli processivity ring. J.Med.Chem., 54, 2011
1YYP	Crystal structure of cytomegalovirus UL44 bound to C-terminal peptide from CMV UL54 分子名称: 1,2-ETHANEDIOL, DNA polymerase, DNA polymerase processivity factor, ... 著者 Appleton, B.A, Brooks, J, Loregian, A, Filman, D.J, Coen, D.M, Hogle, J.M. 登録日 2005-02-25 公開日 2005-12-27 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the cytomegalovirus DNA polymerase subunit UL44 in complex with the C terminus from the catalytic subunit. Differences in structure and function relative to unliganded UL44. J.Biol.Chem., 281, 2006
7TFI	Atomic model of the S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with an open clamp 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2022-01-06 公開日 2022-11-16 実験手法 ELECTRON MICROSCOPY (3.41 Å) 主引用文献 Cryo-EM structures reveal that RFC recognizes both the 3'- and 5'-DNA ends to load PCNA onto gaps for DNA repair. Elife, 11, 2022
7TFJ	Atomic model of S. cerevisiae clamp-clamp loader complex PCNA-RFC bound to DNA with a closed clamp ring 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... 著者 Zheng, F, Georgescu, R, Yao, Y.N, O'Donnell, M.E, Li, H. 登録日 2022-01-06 公開日 2022-11-16 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Cryo-EM structures reveal that RFC recognizes both the 3'- and 5'-DNA ends to load PCNA onto gaps for DNA repair. Elife, 11, 2022

<78910111213141516171819202122>