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5DVF
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Crystal structure of unliganded periplasmic glucose binding protein (ppGBP) from P. putida CSV86
分子名称: Binding protein component of ABC sugar transporter, SULFATE ION
著者Pandey, S, Modak, A, Phale, P.S, Bhaumik, P.
登録日2015-09-21
公開日2016-02-17
最終更新日2016-04-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献High Resolution Structures of Periplasmic Glucose-binding Protein of Pseudomonas putida CSV86 Reveal Structural Basis of Its Substrate Specificity
J.Biol.Chem., 291, 2016
4H4E
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IspH in complex with (E)-4-mercapto-3-methylbut-2-enyl diphosphate
分子名称: (2E)-3-methyl-4-sulfanylbut-2-en-1-yl trihydrogen diphosphate, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, IRON/SULFUR CLUSTER
著者Span, I, Eisenreich, W, Jauch, J, Bacher, A, Groll, M.
登録日2012-09-17
公開日2013-01-23
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structures of Fluoro, Amino, and Thiol Inhibitors Bound to the [Fe(4) S(4) ] Protein IspH.
Angew.Chem.Int.Ed.Engl., 52, 2013
5GHU
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Crystal structure of YadV chaperone at 1.63 Angstrom
分子名称: ACETATE ION, CHLORIDE ION, FORMIC ACID, ...
著者Pandey, N.K, Bhavesh, N.S.
登録日2016-06-20
公開日2017-06-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献Crystal structure of the usher chaperone YadV reveals a monomer with the proline lock in closed conformation suggestive of an intermediate state.
Febs Lett., 2020
4JTP
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Crystal structure of Ribosome inactivating protein from Momordica balsamina complexed with Ascorbic acid at 1.85 Angstrom resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ASCORBIC ACID, rRNA N-glycosidase
著者Pandey, S, Bhushan, A, Singh, A, Tyagi, T.K, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2013-03-24
公開日2013-04-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of Ribosome inactivating protein from Momordica balsamina complexed with Ascorbic acid at 1.85 Angstrom resolution
TO BE PUBLISHED
4JTB
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Crystal structure of Ribosome inactivating protein from Momordica balsamina complexed with phosphate ion at 1.71 Angstrom resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, rRNA N-glycosidase
著者Pandey, S, Tyagi, T.K, Singh, A, Kushwaha, G.S, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P.
登録日2013-03-23
公開日2013-04-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Crystal structure of Ribosome inactivating protein from Momordica balsamina complexed with phosphate ion at 1.71 Angstrom resolution
To be published
4BSK
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Crystal structure of VEGF-C in complex with VEGFR-3 domains D1-2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, VASCULAR ENDOTHELIAL GROWTH FACTOR C, ...
著者Leppanen, V.M, Tvorogov, D, Kisko, K, Prota, A.E, Jeltsch, M, Anisimov, A, Markovic-Mueller, S, Stuttfeld, E, Goldie, K.N, Ballmer-Hofer, K, Alitalo, K.
登録日2013-06-10
公開日2013-07-31
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (4.201 Å)
主引用文献Structural and Mechanistic Insights Into Vegfr-3 Ligand Binding and Activation
Proc.Natl.Acad.Sci.USA, 110, 2013
4CKH
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Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
分子名称: ARF-GAP WITH COILED-COIL, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN 1
著者Pang, X.Y, Fan, J, Zhang, Y, Zhang, K, Gao, B.Q, Ma, J, Li, J, Deng, Y.C, Zhou, Q.J, Hsu, V, Sun, F.
登録日2014-01-06
公開日2014-10-15
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (17 Å)
主引用文献A Ph Domain in Acap1 Possesses Key Features of the Bar Domain in Promoting Membrane Curvature.
Dev.Cell, 31, 2014
4CKG
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Helical reconstruction of ACAP1(BAR-PH domain) decorated membrane tubules by cryo-electron microscopy
分子名称: ARF-GAP WITH COILED-COIL, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN 1
著者Pang, X.Y, Fan, J, Zhang, Y, Zhang, K, Gao, B.Q, Ma, J, Li, J, Deng, Y.C, Zhou, Q.J, Hsu, V, Sun, F.
登録日2014-01-06
公開日2014-10-15
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (15 Å)
主引用文献A Ph Domain in Acap1 Possesses Key Features of the Bar Domain in Promoting Membrane Curvature.
Dev.Cell, 31, 2014
4DQO
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Crystal Structure of PG16 Fab in Complex with V1V2 Region from HIV-1 strain ZM109
分子名称: 1FD6-V1V2 scaffold ZM109 HIV-1 strain, N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PG16 Fab Heavy Chain, ...
著者Pancera, M, McLellan, J.S, Kwong, P.D.
登録日2012-02-16
公開日2013-03-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.438 Å)
主引用文献Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16.
Nat.Struct.Mol.Biol., 20, 2013
3UVF
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BU of 3uvf by Molmil
Expanding LAGALIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space
分子名称: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Intron-encoded DNA endonuclease I-HjeMI, ...
著者Jacoby, K, Metzger, M, Shen, B, Jarjour, J, Stoddard, B, Scharenberg, A.
登録日2011-11-29
公開日2012-02-29
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Expanding LAGLIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space.
Nucleic Acids Res., 40, 2012
3WUI
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BU of 3wui by Molmil
Dimeric horse cytochrome c formed by refolding from molten globule state
分子名称: Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者Deshpande, M.S, Parui, P.P, Kamikubo, H, Yamanaka, M, Nagao, S, Komori, H, Kataoka, M, Higuchi, Y, Hirota, S.
登録日2014-04-25
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer.
Biochemistry, 53, 2014
3ZS8
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S. cerevisiae Get3 complexed with a cytosolic Get1 fragment
分子名称: ATPASE GET3, GOLGI TO ER TRAFFIC PROTEIN 1, ZINC ION
著者Mariappan, M, Mateja, A, Dobosz, M, Bove, E, Hegde, R.S, Keenan, R.J.
登録日2011-06-24
公開日2011-09-07
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献The Mechanism of Membrane-Associated Steps in Tail-Anchored Protein Insertion.
Nature, 477, 2011
3ZS9
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S. cerevisiae Get3-ADP-AlF4- complex with a cytosolic Get2 fragment
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPASE GET3, GOLGI TO ER TRAFFIC PROTEIN 2, ...
著者Mariappan, M, Mateja, A, Dobosz, M, Bove, E, Hegde, R.S, Keenan, R.J.
登録日2011-06-24
公開日2011-09-07
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.095 Å)
主引用文献The Mechanism of Membrane-Associated Steps in Tail-Anchored Protein Insertion.
Nature, 477, 2011
4BSJ
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BU of 4bsj by Molmil
Crystal structure of VEGFR-3 extracellular domains D4-5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 3
著者Leppanen, V.-M, Tvorogov, D, Kisko, K, Prota, A.E, Jeltsch, M, Anisimov, A, Markovic-Mueller, S, Stuttfeld, E, Goldie, K.N, Ballmer-Hofer, K, Alitalo, K.
登録日2013-06-10
公開日2013-07-31
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural and Mechanistic Insights Into Vegfr-3 Ligand Binding and Activation
Proc.Natl.Acad.Sci.USA, 110, 2013
3UV3
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Ec_IspH in complex with but-2-ynyl diphosphate (1086)
分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, IRON/SULFUR CLUSTER, but-2-yn-1-yl trihydrogen diphosphate
著者Span, I, Wang, K, Wang, W, Zhang, Y, Bacher, A, Eisenreich, W, Schulz, C, Oldfield, E, Groll, M.
登録日2011-11-29
公開日2012-09-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Discovery of acetylene hydratase activity of the iron-sulphur protein IspH.
Nat Commun, 3, 2012
3URK
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IspH in complex with propynyl diphosphate (1061)
分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, IRON/SULFUR CLUSTER, prop-2-yn-1-yl trihydrogen diphosphate
著者Span, I, Wang, K, Wang, W, Zhang, Y, Bacher, A, Eisenreich, W, Schulz, C, Oldfield, E, Groll, M.
登録日2011-11-22
公開日2012-09-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Discovery of acetylene hydratase activity of the iron-sulphur protein IspH.
Nat Commun, 3, 2012
3UTC
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Ec_IspH in complex with (E)-4-hydroxybut-3-enyl diphosphate
分子名称: (3E)-4-hydroxybut-3-en-1-yl trihydrogen diphosphate, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, IRON/SULFUR CLUSTER
著者Span, I, Wang, K, Wang, W, Zhang, Y, Bacher, A, Eisenreich, W, Li, K, Schulz, C, Oldfield, E, Groll, M.
登録日2011-11-25
公開日2012-09-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Discovery of acetylene hydratase activity of the iron-sulphur protein IspH.
Nat Commun, 3, 2012
4DNE
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BU of 4dne by Molmil
Crystal structure of a triple-mutant of streptavidin in complex with desthiobiotin
分子名称: 6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID, SULFATE ION, Streptavidin
著者Panwar, P, Deniaud, A, Pebay-Peyroula, E.
登録日2012-02-08
公開日2012-09-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Contamination from an affinity column: an encounter with a new villain in the world of membrane-protein crystallization.
Acta Crystallogr.,Sect.D, 68, 2012
3W5I
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BU of 3w5i by Molmil
Crystal structure of NfeoB from Gallionella capsiferriformans
分子名称: Ferrous iron transport protein B, SULFATE ION
著者Deshpande, C.N, McGrath, A.P, Jormakka, M.
登録日2013-01-30
公開日2013-04-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Structure of an atypical FeoB G-domain reveals a putative domain-swapped dimer.
Acta Crystallogr.,Sect.F, 69, 2013
3WA1
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Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus
分子名称: BinB protein
著者Srisucharitpanit, K, Yao, M, Chimnaronk, S, Promdonkoy, B, Boonserm, P, Tanaka, I.
登録日2013-04-22
公開日2014-07-02
最終更新日2014-10-08
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of BinB: A receptor binding component of the binary toxin from Lysinibacillus sphaericus
Proteins, 82, 2014
3UV6
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Ec_IspH in complex with 4-hydroxybutyl diphosphate (1301)
分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, 4-hydroxybutyl trihydrogen diphosphate, IRON/SULFUR CLUSTER
著者Span, I, Wang, K, Wang, W, Zhang, Y, Bacher, A, Eisenreich, W, Schulz, C, Oldfield, E, Groll, M.
登録日2011-11-29
公開日2012-09-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Discovery of acetylene hydratase activity of the iron-sulphur protein IspH.
Nat Commun, 3, 2012
3UWM
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Ec_IspH in complex with 4-oxobutyl diphosphate (1302)
分子名称: (3E)-4-hydroxybut-3-en-1-yl trihydrogen diphosphate, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, 4-oxobutyl trihydrogen diphosphate, ...
著者Span, I, Wang, K, Wang, W, Zhang, Y, Bacher, A, Eisenreich, W, Schulz, C, Oldfield, E, Groll, M.
登録日2011-12-02
公開日2012-09-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Discovery of acetylene hydratase activity of the iron-sulphur protein IspH.
Nat Commun, 3, 2012
4BEP
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BU of 4bep by Molmil
Crystal structure of the Legionella pneumophila FIC domain-containing effector AnkX protein (apo-form)
分子名称: MAGNESIUM ION, PHOSPHOCHOLINE TRANSFERASE ANKX, SULFATE ION
著者Campanacci, V, Mukherjee, S, Roy, C.R, Cherfils, J.
登録日2013-03-12
公開日2013-04-24
最終更新日2013-05-29
実験手法X-RAY DIFFRACTION (3.14 Å)
主引用文献Structure of the Legionella Effector Ankx Reveals the Mechanism of Phosphocholine Transfer by the Fic Domain.
Embo J., 32, 2013
7FHU
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Crystal structure of Multi-functional Polysaccharide lyase Smlt1473 from Stenotrophomonas maltophilia (strain K279a) in apo form at pH 8.5
分子名称: Polysaccharide lyase, SULFATE ION
著者Pandey, S, Berger, B.W, Acharya, R.
登録日2021-07-30
公開日2021-10-27
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Structural insights into the mechanism of pH-selective substrate specificity of the polysaccharide lyase Smlt1473.
J.Biol.Chem., 297, 2021
7FHV
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Crystal structure of Multi-functional Polysaccharide lyase Smlt1473 (WT) from Stenotrophomonas maltophilia (strain K279a) in apo form at pH 6.5
分子名称: DI(HYDROXYETHYL)ETHER, Polysaccharide lyase, SULFATE ION
著者Pandey, S, Berger, B.W, Acharya, R.
登録日2021-07-30
公開日2021-10-27
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Structural insights into the mechanism of pH-selective substrate specificity of the polysaccharide lyase Smlt1473.
J.Biol.Chem., 297, 2021

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