PDB: 17012 件ウェブページステータス検索Chemie searchBIRD

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5FGC	Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC33.8 分子名称: Anti-HCV E2 Fab HC33.8 heavy chain, Anti-HCV E2 Fab HC33.8 light chain, Genome polyprotein 著者 Girard-Blanc, C, Rey, F.A, Krey, T. 登録日 2015-12-20 公開日 2016-01-20 最終更新日 2016-03-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Antibody Response to Hypervariable Region 1 Interferes with Broadly Neutralizing Antibodies to Hepatitis C Virus. J.Virol., 90, 2016
8AZG	Crystal structure of MreB from Geobacillus stearothermophilus ATCC7953 in complex with ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, Cell shape-determining protein MreB, GLYCEROL 著者 Li de la Sierra-Gallay, I, Mao, W. 登録日 2022-09-06 公開日 2023-09-13 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 On the role of nucleotides and lipids in the polymerization of the actin homolog MreB from a Gram-positive bacterium. Elife, 12, 2023
2JIC	High resolution structure of xylanase-II from one micron beam experiment 分子名称: XYLANASE-II 著者 Moukhametzianov, R, Burghammer, M, Edwards, P.C, Petitdemange, S, Popov, D, Fransen, M, Schertler, G.F, Riekel, C. 登録日 2007-02-27 公開日 2008-05-13 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Protein Crystallography with a Micrometre-Sized Synchrotron-Radiation Beam. Acta Crystallogr.,Sect.D, 64, 2008
5GLA	Crystal structure of the class A beta-lactamase PenL-tTR10 containing 10 residues insertion in omega-loop 分子名称: Beta-lactamase 著者 Choi, J.M, Yi, H, Kim, H.S, Lee, S.H. 登録日 2016-07-10 公開日 2017-02-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 High adaptability of the omega loop underlies the substrate-spectrum-extension evolution of a class A beta-lactamase, PenL Sci Rep, 6, 2016
5GL9	Crystal structure of the class A beta-lactamase PenL 分子名称: Beta-lactamase, GLYCEROL 著者 Choi, J.M, Yi, H, Kim, H.S, Lee, S.H. 登録日 2016-07-10 公開日 2017-02-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 High adaptability of the omega loop underlies the substrate-spectrum-extension evolution of a class A beta-lactamase, PenL Sci Rep, 6, 2016
5FGB	Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprotein E2 Fab fragment HC33.4 分子名称: Anti-HCV E2 Fab HC84-1 heavy chain, Anti-HCV E2 Fab HC84-1 light chain, GLYCEROL, ... 著者 Girard-Blanc, C, Rey, F.A, Krey, T. 登録日 2015-12-20 公開日 2016-01-20 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Antibody Response to Hypervariable Region 1 Interferes with Broadly Neutralizing Antibodies to Hepatitis C Virus. J.Virol., 90, 2016
5FDF	Crystal structure of the monoclinic form of Thermotoga maritima Acetyl Esterase TM0077 (apo structure) at 1.76 Angstrom resolution 分子名称: ACETATE ION, CHLORIDE ION, Cephalosporin-C deacetylase 著者 Manoj, N, Singh, M.K. 登録日 2015-12-16 公開日 2016-04-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 An extended loop in CE7 carbohydrate esterase family is dispensable for oligomerization but required for activity and thermostability. J.Struct.Biol., 194, 2016
2HDU	AmpC beta-lactamase in complex with 2-acetamidothiophene-3-carboxylic acid 分子名称: 2-(ACETYLAMINO)THIOPHENE-3-CARBOXYLIC ACID, Beta-lactamase, PHOSPHATE ION, ... 著者 Babaoglu, K, Shoichet, B.K. 登録日 2006-06-20 公開日 2006-11-07 最終更新日 2017-10-18 実験手法 X-RAY DIFFRACTION (1.49 Å) 主引用文献 Deconstructing fragment-based inhibitor discovery Nat.Chem.Biol., 2, 2006
8E5Q	Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0150303 Complex 分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase oxamniquine resistance protein, [2-(dihydroxyamino)-4-({[(3R)-1-[(1H-indol-3-yl)methyl]-3-{[3-(trifluoromethyl)phenyl]methyl}pyrrolidin-3-yl]methyl}amino)phenyl]methanol 著者 Taylor, A.B, Alwan, S.N. 登録日 2022-08-22 公開日 2023-07-26 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.33 Å) 主引用文献 Oxamniquine derivatives overcome Praziquantel treatment limitations for Schistosomiasis. Plos Pathog., 19, 2023
8E5R	Schistosoma mansoni (Blood Fluke) Sulfotransferase/CIDD-0150610 Complex 分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase oxamniquine resistance protein, [4-({[(3R)-1-[(1H-indol-3-yl)methyl]-3-{[4-(trifluoromethyl)phenyl]methyl}pyrrolidin-3-yl]methyl}amino)-3-nitrophenyl]methanol 著者 Taylor, A.B, Alwan, S.N. 登録日 2022-08-22 公開日 2023-07-26 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Oxamniquine derivatives overcome Praziquantel treatment limitations for Schistosomiasis. Plos Pathog., 19, 2023
2HDQ	AmpC beta-lactamase in complex with 2-carboxythiophene 分子名称: Beta-lactamase, THIOPHENE-2-CARBOXYLIC ACID 著者 Babaoglu, K, Shoichet, B.K. 登録日 2006-06-20 公開日 2006-11-07 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Deconstructing fragment-based inhibitor discovery Nat.Chem.Biol., 2, 2006
2IIV	Human dipeptidyl peptidase 4 in complex with a diazepan-2-one inhibitor 分子名称: (3R)-4-[(3R)-3-AMINO-4-(2,4,5-TRIFLUOROPHENYL)BUTANOYL]-3-METHYL-1,4-DIAZEPAN-2-ONE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Scapin, G, Weber, A.E, Biftu, T. 登録日 2006-09-28 公開日 2006-11-28 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 (3R)-4-[(3R)-3-Amino-4-(2,4,5-trifluorophenyl)butanoyl]-3-(2,2,2-trifluoroethyl)-1,4-diazepan-2-one, a selective dipeptidyl peptidase IV inhibitor for the treatment of type 2 diabetes Bioorg.Med.Chem.Lett., 17, 2007
8DOT	Structure of a methane clathrate binding protein 分子名称: TETRAETHYLENE GLYCOL, methane clathrate binding protein 著者 Huard, D.J.E, Lieberman, R.L, Glass, J.B. 登録日 2022-07-14 公開日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Molecular basis for inhibition of methane clathrate growth by a deep subsurface bacterial protein. Pnas Nexus, 2, 2023
2IOH	Crystal structure of phosphonoacetaldehyde hydrolase with a K53R mutation 分子名称: MAGNESIUM ION, PHOSPHATE ION, Phosphonoacetaldehyde hydrolase 著者 Allen, K.A, Lahiri, S.D, Zhang, G, Dunaway-Mariano, D, Peisach, E. 登録日 2006-10-10 公開日 2007-08-07 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Diversification of function in the haloacid dehalogenase enzyme superfamily: The role of the cap domain in hydrolytic phosphoruscarbon bond cleavage. Bioorg.Chem., 34, 2006
5EFD	Crystal structure of a surface pocket creating mutant (W6A) of an alkali thermostable GH10 xylanase from Bacillus sp. NG-27 分子名称: 1,2-ETHANEDIOL, Beta-xylanase, CHLORIDE ION, ... 著者 Mahanta, P, Bhardwaj, A, Reddy, V.S, Ramakumar, S. 登録日 2015-10-23 公開日 2016-10-26 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.674 Å) 主引用文献 Small Glycols Discover Cryptic Pockets on Proteins for Fragment-Based Approaches. J.Chem.Inf.Model., 2021
2KMS	Combined high- and low-resolution techniques reveal compact structure in central portion of factor H despite long inter-modular linkers 分子名称: Complement factor H 著者 Schmidt, C.Q, Herbert, A.P, Guariento, M, Mertens, H.D.T, Soares, D.C, Uhrin, D, Rowe, A.J, Svergun, D.I, Barlow, P.N. 登録日 2009-08-04 公開日 2009-11-03 最終更新日 2020-02-26 実験手法 SOLUTION NMR 主引用文献 The Central Portion of Factor H (Modules 10-15) Is Compact and Contains a Structurally Deviant CCP Module J.Mol.Biol., 395, 2010
8F01	Thaumatin Anomalous Dataset at 293 K and 7.1 keV 分子名称: L(+)-TARTARIC ACID, POTASSIUM ION, Thaumatin I 著者 Doukov, T, Yabukarski, F, Herschlag, D. 登録日 2022-11-01 公開日 2023-03-15 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures. Acta Crystallogr D Struct Biol, 79, 2023
5GLB	Crystal structure of the class A beta-lactamase PenL-tTR10 in complex with CBA 分子名称: Beta-lactamase, PINACOL[[2-AMINO-ALPHA-(1-CARBOXY-1-METHYLETHOXYIMINO)-4-THIAZOLEACETYL]AMINO]METHANEBORONATE 著者 Choi, J.M, Yi, H, Kim, H.S, Lee, S.H. 登録日 2016-07-10 公開日 2017-02-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 High adaptability of the omega loop underlies the substrate-spectrum-extension evolution of a class A beta-lactamase, PenL Sci Rep, 6, 2016
2KDQ	Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat protein 分子名称: HIV-1 TAR RNA, L-22 CYCLIC PEPTIDE 著者 Davidson, A, Leeper, T.C, Varani, G. 登録日 2009-01-14 公開日 2009-06-23 最終更新日 2022-03-16 実験手法 SOLUTION NMR 主引用文献 Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein Proc.Natl.Acad.Sci.USA, 106, 2009
8F03	Thaumatin Anomalous Dataset at 293 K and 12 keV 分子名称: L(+)-TARTARIC ACID, POTASSIUM ION, Thaumatin I 著者 Doukov, T, Yabukarski, F, Herschlag, D. 登録日 2022-11-01 公開日 2023-03-15 実験手法 X-RAY DIFFRACTION (1.39 Å) 主引用文献 Obtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures. Acta Crystallogr D Struct Biol, 79, 2023
2I0Q	Crystal structure of a telomere single-strand DNA-protein complex from O. nova with full-length alpha and beta telomere proteins 分子名称: 1,2-ETHANEDIOL, 5'-D(*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', CHLORIDE ION, ... 著者 Horvath, M.P, Buczek, P. 登録日 2006-08-11 公開日 2006-08-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.91 Å) 主引用文献 Structural reorganization and the cooperative binding of single-stranded telomere DNA in Sterkiella nova. J.Biol.Chem., 281, 2006
8CYK	Crystal structure of hallucinated protein HALC1_878 分子名称: HALC1_878 著者 Ragotte, R.J, Bera, A.K, Milles, L.F, Wicky, B.I.M, Baker, D. 登録日 2022-05-23 公開日 2022-09-28 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Robust deep learning-based protein sequence design using ProteinMPNN. Science, 378, 2022
2HJ3	Structure of the Arabidopsis Thaliana Erv1 Thiol Oxidase 分子名称: FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, Sulfhydryl oxidase Erv1p 著者 Vitu, E, Fass, D. 登録日 2006-06-30 公開日 2006-08-22 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Gain of Function in an ERV/ALR Sulfhydryl Oxidase by Molecular Engineering of the Shuttle Disulfide. J.Mol.Biol., 362, 2006
3RMC	Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol 分子名称: DNA (5'-D(*CP*GP*TP*(CTG)P*GP*AP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3'), DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*TP*CP*A)-3'), DNA polymerase 著者 Aller, P, Duclos, S, Wallace, S.S, Doublie, S. 登録日 2011-04-20 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A crystallographic study of the role of sequence context in thymine glycol bypass by a replicative DNA polymerase serendipitously sheds light on the exonuclease complex. J.Mol.Biol., 412, 2011
5E5L	Crystal structure of Mycobacterium tuberculosis L,D-transpeptidase 1 at 1.89 Angstrom 分子名称: L,D-transpeptidase 1 著者 Kumar, P, Lamichhane, G, Ginell, S.L. 登録日 2015-10-08 公開日 2016-10-26 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Non-classical transpeptidases yield insight into new antibacterials. Nat. Chem. Biol., 13, 2017

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