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8III
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BU of 8iii by Molmil
Complex form of MsmUdgX H109C mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX H109C
分子名称: GLYCEROL, IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, ...
著者Aroli, S.
登録日2023-02-24
公開日2023-06-21
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution.
Nucleic Acids Res., 51, 2023
8IIH
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BU of 8iih by Molmil
H109C mutant of uracil DNA glycosylase X
分子名称: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase
著者Aroli, S.
登録日2023-02-24
公開日2023-06-21
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution.
Nucleic Acids Res., 51, 2023
8IIG
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BU of 8iig by Molmil
Complex form of MsmUdgX H109A mutant and uracil- obtained from uracil DNA (ttUtt) post its cleavage by UdgX H109A
分子名称: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, URACIL
著者Aroli, S.
登録日2023-02-24
公開日2023-06-21
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution.
Nucleic Acids Res., 51, 2023
8IIF
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BU of 8iif by Molmil
H109A mutant of uracil DNA glycosylase X
分子名称: GLYCEROL, IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase
著者Aroli, S.
登録日2023-02-24
公開日2023-06-21
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution.
Nucleic Acids Res., 51, 2023
8IIE
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BU of 8iie by Molmil
Complex form of MsmUdgX and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX
分子名称: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, URACIL
著者Aroli, S.
登録日2023-02-24
公開日2023-06-21
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution.
Nucleic Acids Res., 51, 2023
8IIA
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BU of 8iia by Molmil
Crystal structure of the oligomeric state of the extracellular domain of human myelin protein zero(MPZ/P0)
分子名称: GLYCEROL, Myelin protein P0
著者Sakakura, M, Tanabe, M, Mio, K.
登録日2023-02-24
公開日2023-08-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structural bases for the Charcot-Marie-Tooth disease induced by single amino acid substitutions of myelin protein zero.
Structure, 31, 2023
8II0
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BU of 8ii0 by Molmil
FACTOR INHIBITING HIF-1 ALPHA in complex with (5-(3-(3-chlorophenyl)isoxazol-5-yl)-3-hydroxypicolinoyl)glycine
分子名称: 2-[[5-[3-(3-chlorophenyl)-1,2-oxazol-5-yl]-3-oxidanyl-pyridin-2-yl]carbonylamino]ethanoic acid, GLYCEROL, Hypoxia-inducible factor 1-alpha inhibitor, ...
著者Nakashima, Y, Corner, T, Zhang, X, Schofield, C.J.
登録日2023-02-24
公開日2024-02-28
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献A Small-Molecule Inhibitor of Factor Inhibiting HIF Binding to a Tyrosine-flip Pocket for the Treatment of Obesity.
Angew.Chem.Int.Ed.Engl., 2024
8IHY
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BU of 8ihy by Molmil
X-ray crystal structure of Q387E mutant of endo-1,4-beta glucanase from Eisenia fetida
分子名称: CALCIUM ION, Endoglucanase, GLYCEROL, ...
著者Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M.
登録日2023-02-24
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida.
Curr Res Biotechnol, 5, 2023
8IHX
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BU of 8ihx by Molmil
X-ray crystal structure of N372D mutant of endo-1,4-beta glucanase from Eisenia fetida
分子名称: CALCIUM ION, Endoglucanase, GLYCEROL, ...
著者Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M.
登録日2023-02-24
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida.
Curr Res Biotechnol, 5, 2023
8IHW
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BU of 8ihw by Molmil
X-ray crystal structure of D43R mutant of endo-1,4-beta glucanase from Eisenia fetida
分子名称: CALCIUM ION, Endoglucanase, GLYCEROL, ...
著者Kuroki, C, Hirano, Y, Nakazawa, M, Sakamoto, T, Tamada, T, Ueda, M.
登録日2023-02-24
公開日2023-12-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A single mutation Asp43Arg was increased 2.5-fold the catalytic activity and maintained the stability of cold-adapted endo-1,4-beta glucanase (Ef-EG2) from Eisenia fetida.
Curr Res Biotechnol, 5, 2023
8IHT
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BU of 8iht by Molmil
Rpd3S bound to the nucleosome
分子名称: CALCIUM ION, Chromatin modification-related protein EAF3, DNA (164-MER), ...
著者Zhang, Y, Gang, C.
登録日2023-02-23
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
8IHS
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BU of 8ihs by Molmil
Cryo-EM structure of ochratoxin A-detoxifying amidohydrolase ADH3 in complex with ochratoxin A
分子名称: (2~{S})-2-[[(3~{R})-5-chloranyl-3-methyl-8-oxidanyl-1-oxidanylidene-3,4-dihydroisochromen-7-yl]carbonylamino]-3-phenyl-propanoic acid, Amidohydrolase family protein, ZINC ION
著者Dai, L.H, Niu, D, Huang, J.-W, Li, X, Shen, P.P, Li, H, Hu, Y.M, Yang, Y, Chen, C.-C, Guo, R.-T.
登録日2023-02-23
公開日2023-08-30
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Cryo-EM structure and rational engineering of a superefficient ochratoxin A-detoxifying amidohydrolase.
J Hazard Mater, 458, 2023
8IHN
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BU of 8ihn by Molmil
Cryo-EM structure of the Rpd3S core complex
分子名称: CALCIUM ION, Chromatin modification-related protein EAF3, Histone H3, ...
著者Zhang, Y, Gang, C.
登録日2023-02-23
公開日2024-03-20
実験手法ELECTRON MICROSCOPY (3.37 Å)
主引用文献Structural basis for nucleosome binding and catalysis by the yeast Rpd3S/HDAC holoenzyme.
Cell Res., 33, 2023
8IHL
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BU of 8ihl by Molmil
Overlapping tri-nucleosome
分子名称: DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H.
登録日2023-02-23
公開日2024-01-17
最終更新日2024-01-24
実験手法ELECTRON MICROSCOPY (7.64 Å)
主引用文献Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties.
Commun Biol, 7, 2024
8IHK
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BU of 8ihk by Molmil
Cryo-EM structure of HCA3-Gi complex with acifran (local)
分子名称: (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, Soluble cytochrome b562,Hydroxycarboxylic acid receptor 3
著者Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y.
登録日2023-02-22
公開日2023-08-30
最終更新日2023-12-06
実験手法ELECTRON MICROSCOPY (3.21 Å)
主引用文献Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding.
Nat Commun, 14, 2023
8IHJ
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BU of 8ihj by Molmil
Cryo-EM structure of HCA3-Gi complex with acifran
分子名称: (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
著者Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y.
登録日2023-02-22
公開日2023-08-30
最終更新日2023-12-06
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding.
Nat Commun, 14, 2023
8IHI
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BU of 8ihi by Molmil
Cryo-EM structure of HCA2-Gi complex with acifran
分子名称: (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y.
登録日2023-02-22
公開日2023-08-30
最終更新日2023-12-06
実験手法ELECTRON MICROSCOPY (3.11 Å)
主引用文献Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding.
Nat Commun, 14, 2023
8IHH
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BU of 8ihh by Molmil
Cryo-EM structure of HCA2-Gi complex with LUF6283
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-butyl-1~{H}-pyrazole-3-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y.
登録日2023-02-22
公開日2023-08-30
最終更新日2023-12-06
実験手法ELECTRON MICROSCOPY (3.06 Å)
主引用文献Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding.
Nat Commun, 14, 2023
8IHG
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BU of 8ihg by Molmil
Crystal structure of aminophenol dioxygenase from Pseudomonas species AP-3
分子名称: 2-AMINOPHENOL, 2-aminophenol 1,6-dioxygenase alpha subunit, 2-aminophenol 1,6-dioxygenase beta subunit, ...
著者Shi, Q.L, Su, D.
登録日2023-02-22
公開日2024-02-28
実験手法X-RAY DIFFRACTION (2.858 Å)
主引用文献Crystal structure of aminophenol dioxygenase from Pseudomonas species AP-3
To Be Published
8IHF
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BU of 8ihf by Molmil
Cryo-EM structure of HCA2-Gi complex with MK6892
分子名称: 2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y.
登録日2023-02-22
公開日2023-08-30
最終更新日2023-12-06
実験手法ELECTRON MICROSCOPY (2.97 Å)
主引用文献Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding.
Nat Commun, 14, 2023
8IHB
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BU of 8ihb by Molmil
Cryo-EM structure of HCA2-Gi complex with GSK256073
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 8-chloranyl-3-pentyl-7H-purine-2,6-dione, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
著者Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y.
登録日2023-02-22
公開日2023-09-13
最終更新日2023-12-06
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding.
Nat Commun, 14, 2023
8IH8
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BU of 8ih8 by Molmil
anti-sigmaF factor and Anti-sigmaF factor antagonist complex(usfx-RsfB)
分子名称: Anti-sigma-F factor RsbW, Anti-sigma-F factor antagonist RsfB, GLYCEROL
著者Chen, Y.J, Su, D.
登録日2023-02-22
公開日2024-02-28
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献High resolutions crystal structure of anti-sigmaF factor and Anti-sigmaF factor antagonist complex(usfx-RsfB)
To Be Published
8IH6
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BU of 8ih6 by Molmil
Crystal structure of decarboxylase-hydratase complex from Pseudomonas species AP-3
分子名称: 2-oxopent-4-enoate hydratase, 4-oxalocrotonate decarboxylase, GLYCEROL
著者Shi, Q.L, Su, D.
登録日2023-02-22
公開日2024-02-28
実験手法X-RAY DIFFRACTION (2.519 Å)
主引用文献Crystal structure of decarboxylase-hydratase complex from Pseudomonas species AP-3
To Be Published
8IH5
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BU of 8ih5 by Molmil
The cryo-EM structure of OsCyc1 that complexed with GGPP
分子名称: GERANYLGERANYL DIPHOSPHATE, Syn-copalyl diphosphate synthase, chloroplastic
著者Ma, X.L, Xu, H.F, Jiang, T.
登録日2023-02-22
公開日2023-12-06
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural and functional investigations of syn-copalyl diphosphate synthase from Oryza sativa.
Commun Chem, 6, 2023
8IH1
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BU of 8ih1 by Molmil
Room temperature structure of GH11 from Thermoanaerobacterium saccharolyticum by serial crystallography
分子名称: ACETATE ION, Endo-1,4-beta-xylanase
著者Nam, K.H.
登録日2023-02-22
公開日2023-11-22
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Characterization and structural analysis of the endo-1,4-beta-xylanase GH11 from the hemicellulose-degrading Thermoanaerobacterium saccharolyticum useful for lignocellulose saccharification.
Sci Rep, 13, 2023

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件を2024-07-10に公開中

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