PDB: 46169 件ウェブページステータス検索Chemie searchBIRD

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7MGA	Concanavalin A bound to a DNA glycoconjugate, Man-AAATTT 分子名称: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ... 著者 Partridge, B.E, Winegar, P.H, Mirkin, C.A. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Redefining Protein Interfaces within Protein Single Crystals with DNA. J.Am.Chem.Soc., 143, 2021
7MG5	Concanavalin A bound to a DNA glycoconjugate, Man-ATAT 分子名称: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ... 著者 Partridge, B.E, Winegar, P.H, Mirkin, C.A. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Redefining Protein Interfaces within Protein Single Crystals with DNA. J.Am.Chem.Soc., 143, 2021
7MG8	Concanavalin A bound to a DNA glycoconjugate, Man-CGCG 分子名称: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ... 著者 Partridge, B.E, Winegar, P.H, Mirkin, C.A. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Redefining Protein Interfaces within Protein Single Crystals with DNA. J.Am.Chem.Soc., 143, 2021
7MG6	Concanavalin A bound to a DNA glycoconjugate, Man-AGCT 分子名称: 3-{[2-(2-hydroxyethoxy)ethyl]amino}-4-[(6-hydroxyhexyl)amino]cyclobut-3-ene-1,2-dione, CALCIUM ION, Concanavalin-A, ... 著者 Partridge, B.E, Winegar, P.H, Mirkin, C.A. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Redefining Protein Interfaces within Protein Single Crystals with DNA. J.Am.Chem.Soc., 143, 2021
8DR6	Closed state of RFC:PCNA bound to a nicked dsDNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (32-MER), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-24 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.39 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
4DQR	Ternary complex of Bacillus DNA Polymerase I Large Fragment E658A, DNA duplex, and rCTP (paired with dG of template) in presence of Mn2+ 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), ... 著者 Wang, W, Beese, L.S. 登録日 2012-02-16 公開日 2012-06-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem., 287, 2012
2PUB	CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES 分子名称: ADENINE, DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3'), PURINE REPRESSOR 著者 Schumacher, R.G, Choi, K.Y, Zalkin, H, Brennan, M.A. 登録日 1997-10-04 公開日 1998-05-06 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices. Science, 266, 1994
4DQP	Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and ddCTP (paired with dG of template) 分子名称: 2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE, DNA (5'-D(*C*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'), ... 著者 Wang, W, Beese, L.S. 登録日 2012-02-16 公開日 2012-06-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem., 287, 2012
4DQI	Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and dCTP (paired with dG of template) 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*C*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3'), ... 著者 Wang, W, Beese, L.S. 登録日 2012-02-15 公開日 2012-06-06 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem., 287, 2012
5Y36	Cryo-EM structure of SpCas9-sgRNA-DNA ternary complex 分子名称: CRISPR-associated endonuclease Cas9/Csn1, MAGNESIUM ION, complementary DNA strand, ... 著者 Huang, Q, Li, G, Huai, C. 登録日 2017-07-27 公開日 2017-12-06 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (5.2 Å) 主引用文献 Structural insights into DNA cleavage activation of CRISPR-Cas9 system Nat Commun, 8, 2017
2PZS	Phi29 DNA polymerase complexed with primer-template DNA (post-translocation binary complex) 分子名称: 5'-d(CTAACACGTAAGCAGTC)-3', 5'-d(GACTGCTTAC)-3', DNA polymerase 著者 Berman, A.J, Kamtekar, S, Goodman, J.L, Lazaro, J.M, de Vega, M, Blanco, L, Salas, M, Steitz, T.A. 登録日 2007-05-18 公開日 2007-07-17 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures of phi29 DNA polymerase complexed with substrate: the mechanism of translocation in B-family polymerases Embo J., 26, 2007
8DQW	Open state of Rad24-RFC:9-1-1 bound to a 5' ss/dsDNA junction 分子名称: DDC1 isoform 1, DNA (5'-D(P*CP*GP*TP*CP*CP*CP*TP*TP*CP*C)-3'), DNA (50-MER), ... 著者 Schrecker, M, Hite, R.K. 登録日 2022-07-20 公開日 2022-08-17 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.1 Å) 主引用文献 Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
7RFK	CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor Sinefungin 分子名称: 1,2-ETHANEDIOL, DNA Strand 1, DNA Strand 2, ... 著者 Horton, J.R, Cheng, X, Zhou, J. 登録日 2021-07-14 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics, 17, 2022
7RFL	CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor SGC0946 分子名称: 1,2-ETHANEDIOL, 5-bromo-7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine, DNA Strand 1, ... 著者 Horton, J.R, Cheng, X, Zhou, J. 登録日 2021-07-14 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics, 17, 2022
7RFM	CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor EPZ004777 分子名称: 1,2-ETHANEDIOL, 7-{5-[(3-{[(4-tert-butylphenyl)carbamoyl]amino}propyl)(propan-2-yl)amino]-5-deoxy-beta-D-ribofuranosyl}-7H-pyrrolo[2,3-d]pyrimidin-4-amine, DNA Strand 1, ... 著者 Horton, J.R, Cheng, X, Zhou, J. 登録日 2021-07-14 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics, 17, 2022
7RFN	CamA Adenine Methyltransferase Complexed to Cognate Substrate DNA and Inhibitor SGC8158 分子名称: 1,2-ETHANEDIOL, 5'-S-(4-{[(4'-chloro[1,1'-biphenyl]-3-yl)methyl]amino}butyl)-5'-thioadenosine, DNA Strand 1, ... 著者 Horton, J.R, Cheng, X, Zhou, J. 登録日 2021-07-14 公開日 2021-09-15 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Repurposing epigenetic inhibitors to target the Clostridioides difficile- specific DNA adenine methyltransferase and sporulation regulator CamA. Epigenetics, 17, 2022
2PUA	CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO DNA: MINOR GROOVE BINDING BY ALPHA HELICES 分子名称: 6-METHYLPURINE, DNA (5'-D(*TP*AP*CP*GP*CP*AP*AP*AP*CP*GP*TP*TP*TP*GP*CP*GP*T )-3'), PURINE REPRESSOR 著者 Schumacher, R.G, Choi, K.Y, Zalkin, H, Brennan, M.A. 登録日 1997-10-04 公開日 1998-05-06 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices. Science, 266, 1994
2PIK	CALICHEAMICIN GAMMA1I-DNA COMPLEX, NMR, 6 STRUCTURES 分子名称: 2,4-dideoxy-4-(ethylamino)-3-O-methyl-alpha-L-threo-pentopyranose-(1-2)-4-amino-4,6-dideoxy-beta-D-glucopyranose, 2,6-dideoxy-4-thio-beta-D-allopyranose, 3-O-methyl-alpha-L-rhamnopyranose, ... 著者 Kumar, R.A, Ikemoto, N, Patel, D.J. 登録日 1996-12-31 公開日 1997-05-15 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of the calicheamicin gamma 1I-DNA complex. J.Mol.Biol., 265, 1997
5MCW	New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LWC2) 分子名称: Cellular tumor antigen p53, DNA, FORMYL GROUP, ... 著者 Golovenko, D, Rozenberg, H, Shakked, Z. 登録日 2016-11-10 公開日 2018-06-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.897 Å) 主引用文献 New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
5MCT	New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LHG1) 分子名称: 1,2-ETHANEDIOL, Cellular tumor antigen p53, DNA, ... 著者 Golovenko, D, Rozenberg, H, Shakked, Z. 登録日 2016-11-10 公開日 2018-06-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.446 Å) 主引用文献 New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
3BEP	Structure of a sliding clamp on DNA 分子名称: 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium, DNA (5'-D(*DTP*DTP*DTP*DTP*DAP*DTP*DAP*DCP*DGP*DAP*DTP*DGP*DGP*DG)-3'), DNA (5'-D(P*DCP*DCP*DCP*DAP*DTP*DCP*DGP*DTP*DAP*DT)-3'), ... 著者 Georgescu, R.E, Kim, S.S, Yurieva, O, Kuriyan, J, Kong, X.-P, O'Donnell, M. 登録日 2007-11-19 公開日 2008-01-29 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Structure of a sliding clamp on DNA Cell(Cambridge,Mass.), 132, 2008
6ZNP	Crystal Structure of DUF1998 helicase MrfA bound to DNA 分子名称: CITRIC ACID, Uncharacterized ATP-dependent helicase YprA, ZINC ION, ... 著者 Roske, J.J, Liu, S, Loll, B, Neu, U, Wahl, M.C. 登録日 2020-07-06 公開日 2020-11-25 最終更新日 2021-01-20 実験手法 X-RAY DIFFRACTION (3.16 Å) 主引用文献 A skipping rope translocation mechanism in a widespread family of DNA repair helicases. Nucleic Acids Res., 49, 2021
5MG7	New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-p53R2) 分子名称: Cellular tumor antigen p53, DNA, ZINC ION 著者 Rozenberg, H, Braeuning, B, Golovenko, D, Shakked, Z. 登録日 2016-11-21 公開日 2018-06-13 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins. Structure, 26, 2018
4MFC	Structure of human DNA polymerase beta complexed with O6MG in the template base paired with incoming non-hydrolyzable CTP 分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA polymerase beta, MAGNESIUM ION, ... 著者 Koag, M.C, Min, K, Monzingo, A.F, Lee, S. 登録日 2013-08-27 公開日 2014-04-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.13 Å) 主引用文献 Metal-dependent conformational activation explains highly promutagenic replication across O6-methylguanine by human DNA polymerase beta. J.Am.Chem.Soc., 136, 2014
4MFF	Structure of human DNA polymerase beta complexed with O6MG in the template base paired with incoming non-hydrolyzable TTP 分子名称: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA polymerase beta, MAGNESIUM ION, ... 著者 Koag, M.C, Min, K, Monzingo, A.F, Lee, S. 登録日 2013-08-27 公開日 2014-04-16 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Metal-dependent conformational activation explains highly promutagenic replication across O6-methylguanine by human DNA polymerase beta. J.Am.Chem.Soc., 136, 2014

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