PDB: 37932 件ウェブページステータス検索Chemie searchBIRD

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8E11	Structure of mouse DNA polymerase Beta (PolB) mutant 分子名称: ACETATE ION, DNA polymerase beta, MALONIC ACID 著者 Sharma, N, Thompson, M.K, Prakash, A. 登録日 2022-08-09 公開日 2023-02-01 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Pol beta /XRCC1 heterodimerization dictates DNA damage recognition and basal Pol beta protein levels without interfering with mouse viability or fertility. DNA Repair (Amst), 123, 2023
8DM7	Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with mouse ACE2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... 著者 Zhu, X, Saville, J.W, Mannar, D, Berezuk, A.M, Cholak, S, Tuttle, K.S, Vahdatihassani, F, Subramaniam, S. 登録日 2022-07-08 公開日 2023-02-08 実験手法 ELECTRON MICROSCOPY (2.49 Å) 主引用文献 Structural analysis of receptor engagement and antigenic drift within the BA.2 spike protein. Cell Rep, 42, 2023
8DM5	Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with human ACE2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, ... 著者 Zhu, X, Saville, J.W, Mannar, D, Berezuk, A.M, Cholak, S, Tuttle, K.S, Vahdatihassani, F, Subramaniam, S. 登録日 2022-07-08 公開日 2023-02-08 実験手法 ELECTRON MICROSCOPY (2.51 Å) 主引用文献 Structural analysis of receptor engagement and antigenic drift within the BA.2 spike protein. Cell Rep, 42, 2023
7M4O	Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7CYZ	The structure of human ORP3 OSBP-related domain 分子名称: Oxysterol-binding protein-related protein 3 著者 Dong, X. 登録日 2020-09-05 公開日 2020-10-28 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The crystal structure of ORP3 reveals the conservative PI4P binding pattern. Biochem.Biophys.Res.Commun., 529, 2020
7RF2	RT XFEL structure of dark-stable state of Photosystem II (0F, S1 rich) at 2.08 Angstrom 分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... 著者 Hussein, R, Ibrahim, M, Bhowmick, A, Simon, P.S, Chatterjee, R, Lassalle, L, Doyle, M.D, Bogacz, I, Kim, I.-S, Cheah, M.H, Gul, S, de Lichtenberg, C, Chernev, P, Pham, C.C, Young, I.D, Carbajo, S, Fuller, F.D, Alonso-Mori, R, Batyuk, A, Sutherlin, K.D, Brewster, A.S, Bolotovski, R, Mendez, D, Holton, J.M, Moriarty, N.W, Adams, P.D, Bergmann, U, Sauter, N.K, Dobbek, H, Messinger, J, Zouni, A, Kern, J, Yachandra, V.K, Yano, J. 登録日 2021-07-13 公開日 2021-11-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Structural dynamics in the water and proton channels of photosystem II during the S 2 to S 3 transition. Nat Commun, 12, 2021
7M4M	Crystal structure of RBR E3 ligase RNF216 with ubiquitin 分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4N	Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin 分子名称: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ... 著者 Cotton, T.R, Lechtenberg, B.C. 登録日 2021-03-21 公開日 2022-01-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
6VHH	Human Teneurin-2 and human Latrophilin-3 binary complex 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Adhesion G protein-coupled receptor L3, ... 著者 Xie, Y, Li, J, Arac, D, Zhao, M. 登録日 2020-01-09 公開日 2020-06-03 最終更新日 2020-07-29 実験手法 ELECTRON MICROSCOPY (2.97 Å) 主引用文献 Alternative splicing controls teneurin-latrophilin interaction and synapse specificity by a shape-shifting mechanism. Nat Commun, 11, 2020
8JZR	Outward_facing SLC15A4 monomer 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, lysosomal transporter,ALFA tag 著者 Zhang, S.S, Chen, X.D, Xie, M. 登録日 2023-07-06 公開日 2023-09-27 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.25 Å) 主引用文献 Structural basis for recruitment of TASL by SLC15A4 in human endolysosomal TLR signaling. Nat Commun, 14, 2023
7RHE	Crystal Structure of ROK family protein from Burkholderia vietnamiensis G4 分子名称: ROK family protein 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2021-07-16 公開日 2021-11-17 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure of ROK family protein from Burkholderia vietnamiensis G4 to be published
7RPW	Archaeal DNA ligase and heterotrimeric PCNA in complex with adenylated DNA 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase, DNA polymerase sliding clamp 1, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-04 公開日 2021-11-17 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.38 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
7M33	The structure of Bacillus subtilis BmrCD in the inward-facing conformation bound to Hoechst-33342 and ATP 分子名称: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, ADENOSINE-5'-TRIPHOSPHATE, Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH, ... 著者 Thaker, T.M, Tomasiak, T.M. 登録日 2021-03-18 公開日 2022-01-05 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.55 Å) 主引用文献 Asymmetric drug binding in an ATP-loaded inward-facing state of an ABC transporter. Nat.Chem.Biol., 18, 2022
7RPO	Archaeal DNA ligase and heterotrimeric PCNA in complex with non-ligatable DNA 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase, DNA polymerase sliding clamp 1, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-03 公開日 2021-11-17 最終更新日 2022-03-16 実験手法 ELECTRON MICROSCOPY (4.16 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
6VCU	Homo sapiens FKBP12 protein bound with APX879 in P32 space group 分子名称: ACETATE ION, N'-[(3S,4R,5S,8R,9E,12S,14S,15R,16S,18R,19R,26aS)-5,19-dihydroxy-3-{(1E)-1-[(1R,3R,4R)-4-hydroxy-3-methoxycyclohexyl]prop-1-en-2-yl}-14,16-dimethoxy-4,10,12,18-tetramethyl-1,20,21-trioxo-8-(prop-2-en-1-yl)-1,3,4,5,6,8,11,12,13,14,15,16,17,18,19,20,21,23,24,25,26,26a-docosahydro-7H-15,19-epoxypyrido[2,1-c][1,4]oxazacyclotricosin-7-ylidene]acetohydrazide, Peptidyl-prolyl cis-trans isomerase FKBP1A 著者 Gobeil, S, Spicer, L. 登録日 2019-12-23 公開日 2020-12-16 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 Leveraging Fungal and Human Calcineurin-Inhibitor Structures, Biophysical Data, and Dynamics To Design Selective and Nonimmunosuppressive FK506 Analogs. Mbio, 12, 2021
8DM9	Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... 著者 Zhu, X, Saville, J.W, Mannar, D, Berezuk, A.M, Cholak, S, Tuttle, K.S, Vahdatihassani, F, Subramaniam, S. 登録日 2022-07-08 公開日 2023-02-08 実験手法 ELECTRON MICROSCOPY (2.56 Å) 主引用文献 Structural analysis of receptor engagement and antigenic drift within the BA.2 spike protein. Cell Rep, 42, 2023
7RE6	Crystal Structure of the brown dog tick (Rhipicephalus sanguineus) Arginine Kinase in absence of substrate or ligands 分子名称: Arginine kinase 著者 Gomez-Yanes, A.C, Garcia-Orozco, K.D, Lopez-Zavala, A.A, Sotelo-Mundo, R.R. 登録日 2021-07-12 公開日 2021-11-17 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 The Arginine Kinase from the Tick Rhipicephalus sanguineus Is an Efficient Biocatalyst Catalysts, 12, 2022
8DN1	Q108K:K40L:T51C:T53A:R58L:Q38F:Q4F mutant of hCRBPII bound to synthetic fluorophore CM1V at pH 7.2 分子名称: (2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal, bound form, GLYCEROL, ... 著者 Bingham, C.R, Borhan, B, Geiger, J.H. 登録日 2022-07-10 公開日 2023-02-01 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.32 Å) 主引用文献 Light controlled reversible Michael addition of cysteine: a new tool for dynamic site-specific labeling of proteins. Analyst, 148, 2023
7RPX	Archaeal DNA ligase and heterotrimeric PCNA in complex with end-joined DNA 分子名称: DNA ligase, DNA polymerase sliding clamp 1, DNA polymerase sliding clamp 2, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-04 公開日 2021-11-17 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
7MLW	Burkholderia sp. TJI49 Guanidine-I riboswitch 分子名称: GUANIDINE, Guanidine-I riboswitch, MAGNESIUM ION, ... 著者 Trachman, R.J, Ferre-D'Amare, A.R. 登録日 2021-04-29 公開日 2022-01-12 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 An uncommon [K + (Mg 2+ ) 2 ] metal ion triad imparts stability and selectivity to the Guanidine-I riboswitch. Rna, 27, 2021
7MFT	Glutamate synthase, glutamate dehydrogenase counter-enzyme complex (GudB6-GltA6-GltB6) 分子名称: FE3-S4 CLUSTER, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Jayaraman, V, Lee, D.J, Elad, N, Fraser, J.S, Tawfik, D.S. 登録日 2021-04-11 公開日 2022-01-05 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 A counter-enzyme complex regulates glutamate metabolism in Bacillus subtilis. Nat.Chem.Biol., 18, 2022
7MQY	Zebrafish CNTN4 APLP2 complex 分子名称: Fusion protein of CNTN4 and APLP2 著者 Bouyain, S, Karuppan, S.J. 登録日 2021-05-07 公開日 2022-01-05 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem., 298, 2021
7MRQ	Chicken CNTN4 FN1-FN3 domains with T751A, V752A, Y781A, E786A mutations 分子名称: Contactin-4 著者 Bouyain, S, Karuppan, S.J. 登録日 2021-05-08 公開日 2022-01-05 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem., 298, 2021
7MRO	Zebrafish CNTN4 FN1-FN3 domains 分子名称: Contactin-4 著者 Bouyain, S, Karuppan, S.J. 登録日 2021-05-07 公開日 2022-01-05 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem., 298, 2021
7MRS	Zebrafish CNTN4 APPb complex 分子名称: Amyloid-beta A4 protein, Contactin-4 著者 Bouyain, S, Karuppan, S.J. 登録日 2021-05-09 公開日 2022-01-05 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.93 Å) 主引用文献 Members of the vertebrate contactin and amyloid precursor protein families interact through a conserved interface. J.Biol.Chem., 298, 2021

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