Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7FY6
DownloadVisualize
BU of 7fy6 by Molmil
Crystal Structure of human FABP4 in complex with 6-phenyl-11H-pyrimido[4,5-c][2]benzazepin-3-amine, i.e. SMILES C1(=Nc2c(Cc3c1cccc3)cnc(n2)N)c1ccccc1 with IC50=1.4 microM
分子名称: (10S)-10-phenyl-10,11-dihydro-5H-pyrimido[4,5-c][2]benzazepin-2-amine, FORMIC ACID, Fatty acid-binding protein, ...
著者Ehler, A, Benz, J, Obst, U, Fryer, R, Rudolph, M.G.
登録日2023-04-27
公開日2023-06-14
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Crystal Structure of a human FABP4 complex
To be published
4UJD
DownloadVisualize
BU of 4ujd by Molmil
mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
分子名称: 18S Ribosomal RNA, 28S Ribosomal RNA, 40S RIBOSOMAL PROTEIN ES1, ...
著者Yamamoto, H, Unbehaun, A, Loerke, J, Behrmann, E, Marianne, C, Burger, J, Mielke, T, Spahn, C.M.T.
登録日2014-06-18
公開日2014-07-30
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (8.9 Å)
主引用文献Structure of the Mammalian 80S Initiation Complex with Eif5B on Hcv Ires
Nat.Struct.Mol.Biol., 21, 2014
5QCJ
DownloadVisualize
BU of 5qcj by Molmil
Crystal structure of human Cathepsin-S with bound ligand
分子名称: 5-hydroxy-3-{1-[(2S)-2-hydroxy-3-{5-(methylsulfonyl)-3-[4-(trifluoromethyl)phenyl]-4,5,6,7-tetrahydro-1H-pyrazolo[4,3-c]pyridin-1-yl}propyl]piperidin-4-yl}-1H-pyrrolo[3,2-c]pyridin-5-ium, Cathepsin S, SULFATE ION
著者Bembenek, S.D, Ameriks, M.K, Mirzadegan, T, Yang, H, Shao, C, Burley, S.K.
登録日2017-08-04
公開日2017-12-20
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of human Cathepsin-S with bound ligand
To be published
5QCH
DownloadVisualize
BU of 5qch by Molmil
Crystal structure of human Cathepsin-S with bound ligand
分子名称: 2-(3-[3-({3-[(benzylamino)methyl]-4-chlorophenyl}ethynyl)-4-chlorophenyl]-1-{3-[(3S)-3-methylmorpholin-4-yl]propyl}-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridin-5-yl)-2-oxoacetamide, Cathepsin S, GLYCEROL, ...
著者Bembenek, S.D, Ameriks, M.K, Mirzadegan, T, Yang, H, Shao, C, Burley, S.K.
登録日2017-08-04
公開日2017-12-20
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of human Cathepsin-S with bound ligand
To be published
7FWZ
DownloadVisualize
BU of 7fwz by Molmil
Crystal Structure of human FABP4 in complex with 4-[3-(trifluoromethyl)-5,6,7,8-tetrahydro-4H-cyclohepta[c]pyrazol-1-yl]butanoic acid, i.e. SMILES C1(=NN(C2=C1CCCCC2)CCCC(=O)O)C(F)(F)F with IC50=0.109 microM
分子名称: 4-[3-(trifluoromethyl)-5,6,7,8-tetrahydrocyclohepta[c]pyrazol-1(4H)-yl]butanoic acid, FORMIC ACID, Fatty acid-binding protein, ...
著者Ehler, A, Benz, J, Obst, U, Brunner, M, Rudolph, M.G.
登録日2023-04-27
公開日2023-06-14
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Crystal Structure of a human FABP4 complex
To be published
7F2D
DownloadVisualize
BU of 7f2d by Molmil
Arabidopsis thaliana protease-associated domain of vacuolar-sorting receptor 1 in complex with cruciferin 1 C-terminal pentapeptide RVAAA (pH9)
分子名称: Cruciferin 1 C-terminal peptide, Vacuolar-sorting receptor 1
著者Lui, S.N, Wong, K.B.
登録日2021-06-10
公開日2022-01-12
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Structural insights into how vacuolar sorting receptors recognize the sorting determinants of seed storage proteins.
Proc.Natl.Acad.Sci.USA, 119, 2022
7F2I
DownloadVisualize
BU of 7f2i by Molmil
Arabidopsis thaliana protease-associated domain of vacuolar-sorting receptor 1 in complex with cruciferin 1 C-terminal pentapeptide RVAAA (pH6.5)
分子名称: Cruciferin 1 C-terminal peptide, Vacuolar-sorting receptor 1
著者Lui, S.N, Wong, K.B.
登録日2021-06-11
公開日2022-01-12
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Structural insights into how vacuolar sorting receptors recognize the sorting determinants of seed storage proteins.
Proc.Natl.Acad.Sci.USA, 119, 2022
6LAE
DownloadVisualize
BU of 6lae by Molmil
Crystal structure of the DNA-binding domain of human XPA in complex with DNA
分子名称: DNA (5'-D(P*GP*CP*AP*TP*CP*TP*CP*GP*CP*CP*T)-3'), DNA (5'-D(P*TP*GP*GP*CP*GP*AP*GP*AP*TP*GP*C)-3'), DNA repair protein complementing XP-A cells, ...
著者Lian, F.M, Yang, X, Jiang, Y.L, Yang, F, Li, C, Yang, W, Qian, C.
登録日2019-11-12
公開日2020-02-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献New structural insights into the recognition of undamaged splayed-arm DNA with a single pair of non-complementary nucleotides by human nucleotide excision repair protein XPA.
Int.J.Biol.Macromol., 148, 2020
7FV8
DownloadVisualize
BU of 7fv8 by Molmil
PanDDA analysis group deposition -- PHIP in complex with Z964297186
分子名称: 4-(3-chlorobenzoyl)-N-[3-(6,7-dihydrothieno[3,2-c]pyridin-5(4H)-yl)-3-oxopropyl]-1,4-diazepane-1-carboxamide, PH-interacting protein
著者Grosjean, H, Tomlinson, C, Bradshaw, W.J, Koekemoer, L, Krojer, T, Fearon, D, Biggin, P.C, von Delft, F.
登録日2023-03-09
公開日2023-03-29
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献PanDDA analysis group deposition
To Be Published
9MOT
DownloadVisualize
BU of 9mot by Molmil
Cryo-EM structure of factor Va bound to activated protein C
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor Va heavy chain, Coagulation factor Va light chain, ...
著者Mohammed, B.M, Basore, K, Di Cera, E.
登録日2024-12-27
公開日2025-05-21
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.15 Å)
主引用文献Cryo-EM structure of coagulation factor Va bound to activated protein C.
Blood, 145, 2025
9ODS
DownloadVisualize
BU of 9ods by Molmil
Structure of CRBN TBD bound to compound C3
分子名称: (1P)-1-[(4S)-8H-spiro[furo[2,3-c]imidazo[1,2-a]pyridine-7,4'-piperidin]-3-yl]pyrimidine-2,4(1H,3H)-dione, Protein cereblon, ZINC ION
著者Strickland, C, Rice, C.
登録日2025-04-27
公開日2025-05-28
最終更新日2025-06-25
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Discovery and Characterization of PVTX-321 as a Potent and Orally Bioavailable Estrogen Receptor Degrader for ER+/HER2- Breast Cancer.
J.Med.Chem., 68, 2025
9MOV
DownloadVisualize
BU of 9mov by Molmil
Cryo-EM structure of factor Va bound to activated protein C
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Coagulation factor Va heavy chain, ...
著者Mohammed, B.M, Basore, K, Di Cera, E.
登録日2024-12-27
公開日2025-05-21
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Cryo-EM structure of coagulation factor Va bound to activated protein C.
Blood, 145, 2025
6LXN
DownloadVisualize
BU of 6lxn by Molmil
Crystal structure of C-terminal DNA-binding domain of Escherichia coli OmpR in complex with F1-DNA
分子名称: DNA (27-MER), SULFATE ION, Transcriptional regulatory protein OmpR
著者Sadotra, S, Chen, C, Hsu, C.H.
登録日2020-02-11
公開日2020-12-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.93 Å)
主引用文献Structural basis for promoter DNA recognition by the response regulator OmpR.
J.Struct.Biol., 213, 2020
9M56
DownloadVisualize
BU of 9m56 by Molmil
Bovine Heart Cytochrome c Oxidase in the Fully Reduced State
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, 1,2-ETHANEDIOL, ...
著者Muramoto, K, Shinzawa-Itoh, K.
登録日2025-03-05
公開日2025-07-02
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The binding sites of carbon dioxide, nitrous oxide, and xenon reveal a putative exhaust channel for bovine cytochrome c oxidase.
J.Biol.Chem., 2025
7FEA
DownloadVisualize
BU of 7fea by Molmil
PY14 in complex with Col-D
分子名称: (6~{R},7~{R},9~{E})-6,7-bis(oxidanyl)hexadeca-9,15-dien-11,13-diynoic acid, Acetyl-CoA C-acyltransferase
著者Lin, C.C, Ko, T.P, Huang, K.F, Yang, Y.L.
登録日2021-07-19
公開日2022-07-27
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Integrated omics approach to unveil antifungal bacterial polyynes as acetyl-CoA acetyltransferase inhibitors.
Commun Biol, 5, 2022
7FVS
DownloadVisualize
BU of 7fvs by Molmil
Crystal Structure of S. aureus gyrase in complex with 4-[[1-[(1-chloro-6,7-dihydro-5H-cyclopenta[c]pyridin-6-yl)methyl]azetidin-3-yl]methylamino]-6-fluorochromen-2-one
分子名称: 4-{[(1-{[(6R)-1-chloro-6,7-dihydro-5H-cyclopenta[c]pyridin-6-yl]methyl}azetidin-3-yl)methyl]amino}-6-fluoro-2H-1-benzopyran-2-one, ACETATE ION, CHLORIDE ION, ...
著者Xu, B, Benz, J, Cumming, J.G, Kreis, L, Rudolph, M.G.
登録日2023-04-18
公開日2023-06-28
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Discovery of a Series of Indane-Containing NBTIs with Activity against Multidrug-Resistant Gram-Negative Pathogens.
Acs Med.Chem.Lett., 14, 2023
7OJJ
DownloadVisualize
BU of 7ojj by Molmil
Lassa virus L protein with endonuclease and C-terminal domains in close proximity [MID-LINK]
分子名称: MAGNESIUM ION, RNA-directed RNA polymerase L, ZINC ION
著者Kouba, T, Vogel, D, Thorkelsson, S, Quemin, E, Williams, H.M, Milewski, M, Busch, C, Gunther, S, Grunewald, K, Rosenthal, M, Cusack, S.
登録日2021-05-16
公開日2021-12-01
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity.
Nat Commun, 12, 2021
7O9U
DownloadVisualize
BU of 7o9u by Molmil
Solution structure of oxidized cytochrome c552 from Thioalkalivibrio paradoxus
分子名称: Cytochrome c552, HEME C
著者Britikov, V.V, Britikova, E.V, Altukhov, D.A, Timofeev, V.I, Dergousova, N.I, Rakitina, T.V, Tikhonova, T.V, Usanov, S.A, Popov, V.O, Bocharov, E.V.
登録日2021-04-17
公開日2021-05-05
最終更新日2024-11-20
実験手法SOLUTION NMR
主引用文献Unusual Cytochrome c 552 from Thioalkalivibrio paradoxus : Solution NMR Structure and Interaction with Thiocyanate Dehydrogenase.
Int J Mol Sci, 23, 2022
6OD2
DownloadVisualize
BU of 6od2 by Molmil
Yeast Spc42 C-terminal Antiparallel Coiled-Coil
分子名称: Spindle pole body component SPC42
著者Drennan, A.C, Krishna, S, Seeger, M.A, Andreas, M.P, Gardner, J.M, Sether, E.K.R, Jaspersen, S.L, Rayment, I.
登録日2019-03-25
公開日2019-04-24
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.435 Å)
主引用文献Structure and function of Spc42 coiled-coils in yeast centrosome assembly and duplication.
Mol.Biol.Cell, 30, 2019
7O6L
DownloadVisualize
BU of 7o6l by Molmil
Crystal structure of C. elegans ERH-2
分子名称: Enhancer of rudimentary homolog 2
著者Falk, S, Ketting, R.F.
登録日2021-04-11
公開日2021-08-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis of PETISCO complex assembly during piRNA biogenesis in C. elegans .
Genes Dev., 35, 2021
7RQF
DownloadVisualize
BU of 7rqf by Molmil
Crystal Structure of LbcA (lipoprotein binding partner of CtpA) of Pseudomonas aeruginosa
分子名称: TPR repeat-containing protein PA4667
著者Hsu, H.C, Li, H.
登録日2021-08-06
公開日2022-04-27
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Pseudomonas aeruginosa C-Terminal Processing Protease CtpA Assembles into a Hexameric Structure That Requires Activation by a Spiral-Shaped Lipoprotein-Binding Partner.
Mbio, 13, 2022
7RQH
DownloadVisualize
BU of 7rqh by Molmil
Crystal Structure of carboxyl-terminal processing protease A mutant S302A, CtpA_S302A, of Pseudomonas aeruginosa
分子名称: Probable carboxyl-terminal protease
著者Hsu, H.C, Li, H.
登録日2021-08-06
公開日2022-04-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Pseudomonas aeruginosa C-Terminal Processing Protease CtpA Assembles into a Hexameric Structure That Requires Activation by a Spiral-Shaped Lipoprotein-Binding Partner.
Mbio, 13, 2022
7RPQ
DownloadVisualize
BU of 7rpq by Molmil
Crystal Structure of carboxyl-terminal processing protease A, CtpA, of Pseudomonas aeruginosa
分子名称: Probable carboxyl-terminal protease
著者Hsu, H.C, Li, H.
登録日2021-08-04
公開日2022-04-27
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Pseudomonas aeruginosa C-Terminal Processing Protease CtpA Assembles into a Hexameric Structure That Requires Activation by a Spiral-Shaped Lipoprotein-Binding Partner.
Mbio, 13, 2022
8JB9
DownloadVisualize
BU of 8jb9 by Molmil
Solution structure of Anti-CRISPR protein AcrIIC5
分子名称: Type II-C anti-CRISPR protein, AcrIIC5
著者Hong, S.H, Park, C, An, S.Y, Suh, J.Y.
登録日2023-05-08
公開日2024-05-08
最終更新日2025-05-21
実験手法SOLUTION NMR
主引用文献Structural variants of AcrIIC5 inhibit Cas9 via divergent binding interfaces.
Structure, 33, 2025
6GDL
DownloadVisualize
BU of 6gdl by Molmil
Calmodulin mutant - F141L apo-form Unstructured C-domain
分子名称: Calmodulin-1
著者Holt, C, Overgaard, M.T, Wimmer, R.
登録日2018-04-23
公開日2018-10-17
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Arrhythmia mutations in calmodulin cause conformational changes that affect interactions with the cardiac voltage-gated calcium channel.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon