PDB: 11184 件ウェブページステータス検索Chemie searchBIRD

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1UA4	Crystal Structure of an ADP-dependent Glucokinase from Pyrococcus furiosus 分子名称: ADENOSINE MONOPHOSPHATE, ADP-dependent glucokinase, alpha-D-glucopyranose, ... 著者 Ito, S, Jeong, J.J, Yoshioka, I, Koga, S, Fushinobu, S, Shoun, H, Wakagi, T. 登録日 2003-02-27 公開日 2004-02-27 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of an ADP-dependent glucokinase from Pyrococcus furiosus: implications for a sugar-induced conformational change in ADP-dependent kinase J.Mol.Biol., 331, 2003
1SH2	Crystal Structure of Norwalk Virus Polymerase (Metal-free, Centered Orthorhombic) 分子名称: RNA Polymerase 著者 Ng, K.K, Pendas-Franco, N, Rojo, J, Boga, J.A, Machin, A, Alonso, J.M, Parra, F. 登録日 2004-02-24 公開日 2004-03-09 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of norwalk virus polymerase reveals the carboxyl terminus in the active site cleft. J.Biol.Chem., 279, 2004
2ZBG	Calcium pump crystal structure with bound AlF4 and TG in the absence of calcium 分子名称: MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, 3ABETA, ... 著者 Toyoshima, C, Ogawa, H, Norimatsu, Y. 登録日 2007-10-20 公開日 2007-12-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump Proc.Natl.Acad.Sci.Usa, 104, 2007
1S3K	Crystal Structure of a Humanized Fab (hu3S193) in Complex with the Lewis Y Tetrasaccharide 分子名称: GLYCEROL, HU3S193 Fab fragment, heavy chain, ... 著者 Ramsland, P.A, Farrugia, W, Bradford, T.M, Hogarth, P.M, Scott, A.M. 登録日 2004-01-13 公開日 2004-07-13 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural convergence of antibody binding of carbohydrate determinants in lewis y tumor antigens J.Mol.Biol., 340, 2004
1RZ8	CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY 17B 分子名称: Fab 17b heavy chain, Fab 17b light chain 著者 Huang, C.C, Venturi, M, Majeed, S, Moore, M.J, Phogat, S, Zhang, M.-Y, Dimitrov, D.S, Hendrickson, W.A, Robinson, J, Sodroski, J, Wyatt, R, Choe, H, Farzan, M, Kwong, P.D. 登録日 2003-12-24 公開日 2004-02-03 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120 Proc.Natl.Acad.Sci.USA, 101, 2004
2DFX	Crystal structure of the carboxy terminal domain of colicin E5 complexed with its inhibitor 分子名称: Colicin-E5, Colicin-E5 immunity protein 著者 Yajima, S, Inoue, S, Ogawa, T, Nonaka, T, Ohsawa, K, Masaki, H. 登録日 2006-03-06 公開日 2007-01-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction Nucleic Acids Res., 34, 2006
2ZBE	Calcium pump crystal structure with bound BeF3 in the absence of calcium and TG 分子名称: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 著者 Toyoshima, C, Ogawa, H, Norimatsu, Y. 登録日 2007-10-20 公開日 2007-12-11 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump Proc.Natl.Acad.Sci.Usa, 104, 2007
2DJH	Crystal structure of the carboxy-terminal ribonuclease domain of Colicin E5 分子名称: 2'-DEOXYURIDINE 3'-MONOPHOSPHATE, 2-AMINO-9-(2-DEOXY-3-O-PHOSPHONOPENTOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE, Colicin-E5 著者 Yajima, S, Inoue, S, Ogawa, T, Nonaka, T, Ohsawa, K, Masaki, H. 登録日 2006-04-03 公開日 2007-01-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural basis for sequence-dependent recognition of colicin E5 tRNase by mimicking the mRNA-tRNA interaction Nucleic Acids Res., 34, 2006
1RWF	Crystal structure of Arthrobacter aurescens chondroitin AC lyase in complex with chondroitin tetrasaccharide 分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-2,6-anhydro-3-deoxy-L-xylo-hexonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, PHOSPHATE ION, SODIUM ION, ... 著者 Lunin, V.V, Li, Y, Miyazono, H, Kyogashima, M, Bell, A.W, Cygler, M. 登録日 2003-12-16 公開日 2004-04-13 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism J.Mol.Biol., 337, 2004
1RWG	Crystal structure of Arthrobacter aurescens chondroitin AC lyase in complex with chondroitin tetrasaccharide 分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-2,6-anhydro-3-deoxy-L-xylo-hexonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, PHOSPHATE ION, SODIUM ION, ... 著者 Lunin, V.V, Li, Y, Miyazono, H, Kyogashima, M, Bell, A.W, Cygler, M. 登録日 2003-12-16 公開日 2004-04-13 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism J.Mol.Biol., 337, 2004
2BM0	Ribosomal elongation factor G (EF-G) Fusidic acid resistant mutant T84A 分子名称: ELONGATION FACTOR G, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION 著者 Hansson, S, Singh, R, Gudkov, A.T, Liljas, A, Logan, D.T. 登録日 2005-03-09 公開日 2005-05-04 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural Insights Into Fusidic Acid Resistance and Sensitivity in EF-G J.Mol.Biol., 348, 2005
2BM1	Ribosomal elongation factor G (EF-G) Fusidic acid resistant mutant G16V 分子名称: ELONGATION FACTOR G, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION 著者 Hansson, S, Singh, R, Gudkov, A.T, Liljas, A, Logan, D.T. 登録日 2005-03-09 公開日 2005-05-04 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structural Insights Into Fusidic Acid Resistance and Sensitivity in EF-G J.Mol.Biol., 348, 2005
1SU0	Crystal structure of a hypothetical protein at 2.3 A resolution 分子名称: NifU like protein IscU, ZINC ION 著者 Liu, J, Oganesyan, N, Shin, D.-H, Jancarik, J, Pufan, R, Yokota, H, Kim, R, Kim, S.-H, Berkeley Structural Genomics Center (BSGC) 登録日 2004-03-25 公開日 2004-08-24 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural characterization of an iron-sulfur cluster assembly protein IscU in a zinc-bound form. Proteins, 59, 2005
2DH6	Crystal structure of E. coli Apo-TrpB 分子名称: SULFATE ION, tryptophan synthase beta subunit 著者 Nishio, K, Morimoto, Y, Ogasahara, K, Yasuoka, N, Yutani, K, Tsukihara, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-03-23 公開日 2007-04-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Large conformational changes in the Escherichia coli tryptophan synthase beta(2) subunit upon pyridoxal 5'-phosphate binding Febs J., 277, 2010
2DH5	Crystal structure of E. coli Holo-TrpB 分子名称: GLYCEROL, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, ... 著者 Nishio, K, Morimoto, Y, Ogasahara, K, Yutani, K, Tsukihara, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-03-23 公開日 2007-04-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Large conformational changes in the Escherichia coli tryptophan synthase beta(2) subunit upon pyridoxal 5'-phosphate binding Febs J., 277, 2010
2DF5	Crystal Structure of Pf-PCP(1-204)-C 分子名称: Pyrrolidone-carboxylate peptidase 著者 Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. 登録日 2006-02-24 公開日 2007-03-06 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Conformational contagion in a protein: structural properties of a chameleon sequence Proteins, 68, 2007
2DFH	Crystal structure of Tk-RNase HII(1-212)-C 分子名称: Ribonuclease HII 著者 Katagiri, Y, Takano, K, Chon, H, Matsumura, H, Koga, Y, Kanaya, S. 登録日 2006-03-01 公開日 2007-03-06 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins, 68, 2007
1TFO	Ribonuclease from Escherichia coli complexed with its inhibitor protein 分子名称: Colicin D, Colicin D immunity protein 著者 Yajima, S, Nakanishi, K, Takahashi, K, Ogawa, T, Kezuka, Y, Hidaka, M, Nonaka, T, Ohsawa, K, Masaki, H. 登録日 2004-05-27 公開日 2005-03-01 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Relation between tRNase activity and the structure of colicin D according to X-ray crystallography Biochem.Biophys.Res.Commun., 322, 2004
1UF2	The Atomic Structure of Rice dwarf Virus (RDV) 分子名称: Core protein P3, Outer capsid protein P8, Structural protein P7 著者 Nakagawa, A, Miyazaki, N, Taka, J, Naitow, H, Ogawa, A, Fujimoto, Z, Mizuno, H, Higashi, T, Watanabe, Y, Omura, T, Cheng, R.H, Tsukihara, T. 登録日 2003-05-23 公開日 2003-10-14 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins. Structure, 11, 2003
2ZZJ	Crystal structure of endo-beta-1,4-glucuronan lyase from fungus Trichoderma reesei 分子名称: CALCIUM ION, CITRIC ACID, Glucuronan lyase A 著者 Konno, N, Ishida, T, Fushinobu, S, Igarashi, K, Habu, N, Samejima, M, Isogai, A. 登録日 2009-02-16 公開日 2009-05-05 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Crystal structure of polysaccharide lyase family 20 endo-beta-1,4-glucuronan lyase from the filamentous fungus Trichoderma reesei. Febs Lett., 583, 2009
1UGL	Solution structure of S8-SP11 分子名称: S-locus pollen protein 著者 Mishima, M, Takayama, S, Sasaki, K, Jee, J.G, Kojima, C, Isogai, A, Shirakawa, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2003-06-16 公開日 2003-09-30 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Structure of the Male Determinant Factor for Brassica Self-incompatibility J.Biol.Chem., 278, 2003
1RHH	Crystal Structure of the Broadly HIV-1 Neutralizing Fab X5 at 1.90 Angstrom Resolution 分子名称: Fab X5, heavy chain, light chain 著者 Darbha, R, Phogat, S, Labrijn, A.F, Shu, Y, Gu, Y, Andrykovitch, M, Zhang, M.Y, Pantophlet, R, Martin, L, Vita, C, Burton, D.R, Dimitrov, D.S, Ji, X. 登録日 2003-11-14 公開日 2004-02-24 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal Structure of the Broadly Cross-Reactive HIV-1-Neutralizing Fab X5 and Fine Mapping of Its Epitope Biochemistry, 43, 2004
1RW9	Crystal structure of the Arthrobacter aurescens chondroitin AC lyase 分子名称: PHOSPHATE ION, SODIUM ION, chondroitin AC lyase 著者 Lunin, V.V, Li, Y, Linhardt, R.J, Miyazono, H, Kyogashima, M, Kaneko, T, Bell, A.W, Cygler, M. 登録日 2003-12-16 公開日 2004-04-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism J.Mol.Biol., 337, 2004
1RWH	Crystal structure of Arthrobacter aurescens chondroitin AC lyase in complex with chondroitin tetrasaccharide 分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose-(1-4)-2,6-anhydro-3-deoxy-L-xylo-hexonic acid-(1-3)-2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, GLYCEROL, PHOSPHATE ION, ... 著者 Lunin, V.V, Li, Y, Miyazono, H, Kyogashima, M, Bell, A.W, Cygler, M. 登録日 2003-12-16 公開日 2004-04-13 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 High-resolution crystal structure of Arthrobacter aurescens chondroitin AC lyase: an enzyme-substrate complex defines the catalytic mechanism J.Mol.Biol., 337, 2004
2EHG	Crystal structure of hyperthermophilic archaeal RNase HI 分子名称: ribonuclease HI 著者 You, D.J, Chon, H, Koga, Y, Takano, K, Kanaya, S. 登録日 2007-03-06 公開日 2007-09-11 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal Structure of Type 1 RNase H from a Hyperthermophilic Archaeon with Double-stranded RNA-dependent RNase Activity To be Published

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