PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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1TA8	Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal 分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, NAD-dependent, ... 著者 Gajiwala, K.S, Pinko, C. 登録日 2004-05-19 公開日 2004-11-23 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal. STRUCTURE, 12, 2004
1PFI	PF1 VIRUS STRUCTURE: HELICAL COAT PROTEIN AND DNA WITH PARAXIAL PHOSPHATES 分子名称: DNA (5'-D(P*C)-3'), MAJOR COAT PROTEIN OF PF1 VIRUS 著者 Liu, D.J, Day, L.A. 登録日 1994-04-06 公開日 1995-01-26 最終更新日 2024-02-14 実験手法 FIBER DIFFRACTION (3 Å) 主引用文献 Pf1 virus structure: helical coat protein and DNA with paraxial phosphates. Science, 265, 1994
1K18	Minimized Average NMR Structure of the Zinc Finger Domain of Human DNA Polymerase-alpha 分子名称: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 著者 Evanics, F, Maurmann, L, Yang, W.W, Bose, R.N. 登録日 2001-09-24 公開日 2003-06-24 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Nuclear magnetic resonance structures of the zinc finger domain of human DNA polymerase-alpha. Biochim.Biophys.Acta, 1651, 2003
2E4I	Human Telomeric DNA mixed-parallel/antiparallel quadruplex under Physiological Ionic Conditions Stabilized by Proper Incorporation of 8-Bromoguanosines 分子名称: DNA (5'-D(*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*(BGM)P*DGP*DGP*DTP*DTP*DAP*(BGM)P*(BGM)P*DGP*DTP*DTP*DAP*(BGM)P*DGP*DG)-3') 著者 Matsugami, A, Xu, Y, Noguchi, Y, Sugiyama, H, Katahira, M. 登録日 2006-12-11 公開日 2007-12-11 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Structure of a human telomeric DNA sequence stabilized by 8-bromoguanosine substitutions, as determined by NMR in a K+ solution Febs J., 274, 2007
1IMO	NMR STRUCTURE OF HUMAN DNA LIGASE IIIALPHA BRCT DOMAIN 分子名称: DNA LIGASE III 著者 Krishnan, V.V, Thornton, K.H, Thelen, M.P, Cosman, M. 登録日 2001-05-11 公開日 2001-05-25 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of the human DNA ligase IIIalpha BRCT domain Biochemistry, 40, 2001
4NZV	DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities 分子名称: Exonuclease, putative, MANGANESE (II) ION 著者 Shibata, A, Moiani, D, Arvai, A.S, Perry, J, Harding, S.M, Genois, M, Maity, R, Rossum-Fikkert, S, Kertokalio, A, Romoli, F, Ismail, A, Ismalaj, E, Petricci, E, Neale, M.J, Bristow, R.G, Masson, J, Wyman, C, Jeggo, P.A, Tainer, J.A. 登録日 2013-12-12 公開日 2014-01-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.901 Å) 主引用文献 DNA Double-Strand Break Repair Pathway Choice Is Directed by Distinct MRE11 Nuclease Activities. Mol.Cell, 53, 2014
2N2D	Structure of DNA G-quadruplex adopted by ALS and FTD related GGGGCC repeat with G21 to Br-G21 substitution 分子名称: DNA (5'-D(*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*GP*GP*CP*CP*GP*GP*(BGM)P*G)-3') 著者 Brcic, J, Plavec, J. 登録日 2015-05-06 公開日 2015-09-23 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure of a DNA quadruplex containing ALS and FTD related GGGGCC repeat stabilized by 8-bromodeoxyguanosine substitution. Nucleic Acids Res., 43, 2015
2KY8	Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target methylated DNA sequence 分子名称: DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*(TED)P*CP*C)-3'), DNA (5'-D(*GP*GP*AP*AP*TP*(5CM)P*GP*GP*CP*(TED)P*C)-3'), MANGANESE (II) ION, ... 著者 Williams Jr, D.C, Scarsdale Jr, J.N. 登録日 2010-05-18 公開日 2011-05-18 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target-methylated DNA sequence. Nucleic Acids Res., 39, 2011
1EFO	CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG) 分子名称: DNA (5'-D(*CP*TP*CP*CP*TP*CP*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*GP*AP*GP*AP*G)-3') 著者 Sudarsanakumar, C, Xiong, Y, Sundaralingam, M. 登録日 2000-02-09 公開日 2000-05-29 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of an adenine bulge in the RNA chain of a DNA.RNA hybrid, d(CTCCTCTTC).r(gaagagagag). J.Mol.Biol., 299, 2000
2AQ0	Solution structure of the human homodimeric dna repair protein XPF 分子名称: DNA repair endonuclease XPF 著者 Das, D, Tripsianes, K, Folkers, G, Jaspers, N.G, Hoeijmakers, J.H, Kaptein, R, Boelens, R. 登録日 2005-08-17 公開日 2006-10-03 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The HhH domain of the human DNA repair protein XPF forms stable homodimers Proteins, 70, 2008
2M1V	NMR solution structure of the d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid 分子名称: DNA_(5'-D(*CP*AP*GP*TP*GP*TP*C)-3')_, RNA (29-MER) 著者 Skilandat, M, Sigel, R.K.O. 登録日 2012-12-07 公開日 2014-06-11 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 The Role of Mg(II) in DNA Cleavage Site Recognition in Group II Intron Ribozymes: SOLUTION STRUCTURE AND METAL ION BINDING SITES OF THE RNADNA COMPLEX. J.Biol.Chem., 289, 2014
1IN1	NMR STRUCTURE OF HUMAN DNA LIGASE IIIALPHA BRCT DOMAIN 分子名称: DNA LIGASE III 著者 Krishnan, V.V, Thornton, K.H, Thelen, M.P, Cosman, M. 登録日 2001-05-11 公開日 2001-05-25 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure and backbone dynamics of the human DNA ligase IIIalpha BRCT domain Biochemistry, 40, 2001
2MCJ	NMR structure of spermine modified DNA duplex 分子名称: DNA_(5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3'), DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3') 著者 Brzezinska, J, Gdaniec, Z, Popenda, L, Markiewicz, W.T. 登録日 2013-08-20 公開日 2014-01-22 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine. Biochim.Biophys.Acta, 1840, 2014
1DA1	STRUCTURAL CHARACTERISATION OF THE BROMOURACIL-GUANINE BASE PAIR MISMATCH IN A Z-DNA FRAGMENT 分子名称: DNA (5'-D(*(BRU)P*GP*CP*GP*CP*G)-3'), MAGNESIUM ION 著者 Brown, T, Kneale, G, Hunter, W.N, Kennard, O. 登録日 1992-10-17 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural characterisation of the bromouracil.guanine base pair mismatch in a Z-DNA fragment. Nucleic Acids Res., 14, 1986
1D2I	CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BGLII COMPLEXED WITH DNA 16-MER 分子名称: DNA (5'-D(*TP*AP*TP*TP*AP*TP*AP*GP*AP*TP*CP*TP*AP*TP*AP*A)-3'), MAGNESIUM ION, PROTEIN (RESTRICTION ENDONUCLEASE BGLII) 著者 Lukacs, C.M, Kucera, R, Schildkraut, I, Aggarwal, A.K. 登録日 1999-09-23 公開日 2000-02-21 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution. Nat.Struct.Biol., 7, 2000
1D38	INFLUENCE OF AGLYCONE MODIFICATIONS ON THE BINDING OF ANTHRACYCLINE DRUGS TO DNA: THE MOLECULAR STRUCTURE OF IDARUBICIN AND 4-O-DEMETHYL-11-DEOXYDOXORUBICIN COMPLEXED TO D(CGATCG) 分子名称: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'), IDARUBICIN, MAGNESIUM ION 著者 Gao, Y.-G, Wang, A.H.-J. 登録日 1991-04-23 公開日 1992-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Influence of aglycone modifications on the binding of anthracycline drugs to DNA: the molecular structure of idarubicin and 4-O-demethyl-11-deoxydoxorubicin complexed to d(CGATCG). Anti-Cancer Drug Des., 6, 1991
2HMR	Solution structure of reduced interstrand cross-link arising from S-alpha-methyl-gamma-OH-1,N2-propano-2'-deoxyguanosine in the 5'-CpG-3' DNA sequence 分子名称: DNA dodecamer with interstrand cross-link 著者 Cho, Y.-J, Kozekov, I.D, Harris, T.M, Rizzo, C.J, Stone, M.P. 登録日 2006-07-11 公開日 2007-03-13 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Stereochemistry Modulates the Stability of Reduced Interstrand Cross-Links Arising from R- and S-alpha-CH(3)-gamma-OH-1,N(2)-Propano-2'-deoxyguanosine in the 5'-CpG-3' DNA Sequence Biochemistry, 46, 2007
243D	STRUCTURE OF THE DNA OCTANUCLEOTIDE D(ACGTACGT)2 分子名称: DNA (5'-D(*AP*CP*GP*TP*AP*CP*GP*T)-3') 著者 Wilcock, D.J, Adams, A, Cardin, C.J, Wakelin, L.P.G. 登録日 1996-01-10 公開日 1996-02-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of the DNA octanucleotide d(ACGTACGT)2. Acta Crystallogr.,Sect.D, 52, 1996
2MCI	NMR structure of DNA duplex 分子名称: DNA_(5'-D(*CP*AP*GP*CP*CP*GP*AP*C)-3'), DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3') 著者 Brzezinska, J, Gdaniec, Z, Popenda, L, Markiewicz, W.T. 登録日 2013-08-20 公開日 2014-01-22 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Polyaminooligonucleotide: NMR structure of duplex DNA containing a nucleoside with spermine residue, N-[4,9,13-triazatridecan-1-yl]-2'-deoxycytidine. Biochim.Biophys.Acta, 1840, 2014
2HMD	Stereochemistry Modulates Stability of Reduced Inter-Strand Cross-Links Arising From R- and S-alpha-methyl-gamma-OH-1,N2-propano-2'-Deoxyguanine in the 5'-CpG-3' DNA Sequence 分子名称: DNA dodecamer with interstrand cross-link 著者 Cho, Y.-J, Kozekov, I.D, Harris, T.M, Rizzo, C.J, Stone, M.P. 登録日 2006-07-11 公開日 2007-03-13 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Stereochemistry Modulates the Stability of Reduced Interstrand Cross-Links Arising from R- and S-alpha-CH(3)-gamma-OH-1,N(2)-Propano-2'-deoxyguanosine in the 5'-CpG-3' DNA Sequence Biochemistry, 46, 2007
4HD0	Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair 分子名称: DNA double-strand break repair protein Mre11, MANGANESE (II) ION 著者 Limbo, O, Moiani, D, Kertokalio, A, Wyman, C, Tainer, J.A, Russell, P. 登録日 2012-10-01 公開日 2012-10-31 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mre11 ATLD17/18 mutation retains Tel1/ATM activity but blocks DNA double-strand break repair. Nucleic Acids Res., 40, 2012
1GN7	NMR STRUCTURE OF AN INTRAMOLECULAR DNA TRIPLEX CONTAINING AN N7-GLYCOSYLATED GUANINE, 8 STRUCTURES 分子名称: DNA (5'-D (*AP*GP*AP*GP*AP*GP*AP*AP*CP*CP*CP*CP*TP*TP*CP*TP*CP*TP* CP*TP*TP*AP*TP*AP*TP*CP*TP*GN7*TP*CP*TP*T)-3') 著者 Schultze, P, Koshlap, K.M, Feigon, J. 登録日 1996-11-22 公開日 1997-05-15 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of an intramolecular DNA triplex containing an N7-glycosylated guanine which mimics a protonated cytosine. Biochemistry, 36, 1997
4HYP	Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. 分子名称: DNA gyrase subunit B, MAGNESIUM ION, N-[7-(1H-imidazol-1-yl)-2-(pyridin-3-yl)[1,3]thiazolo[5,4-d]pyrimidin-5-yl]cyclopropanecarboxamide 著者 Bensen, D.C, Creighton, C.J, Tari, L.W. 登録日 2012-11-13 公開日 2013-02-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Pyrrolopyrimidine inhibitors of DNA gyrase B (GyrB) and topoisomerase IV (ParE). Part I: Structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity. Bioorg.Med.Chem.Lett., 23, 2013
2MMF	Solution structure of AGA modified 分子名称: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*AP*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*TP*CP*TP*TP*AP*G)-3') 著者 Li, L, Stone, M. 登録日 2014-03-14 公開日 2015-02-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct. Chem.Res.Toxicol., 28, 2015
2MMR	AGC FAPY modified duplex Major isomer 分子名称: DNA_(5'-D(*CP*TP*AP*AP*(FAG)P*CP*TP*TP*CP*A)-3'), DNA_(5'-D(*TP*GP*AP*AP*GP*CP*TP*TP*AP*G)-3') 著者 Li, L, Stone, M. 登録日 2014-03-17 公開日 2015-02-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 DNA Sequence Modulates Geometrical Isomerism of the trans-8,9-Dihydro-8-(2,6-diamino-4-oxo-3,4-dihydropyrimid-5-yl-formamido)-9-hydroxy Aflatoxin B1 Adduct. Chem.Res.Toxicol., 28, 2015

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