PDB: 98546 件ウェブページステータス検索Chemie searchBIRD

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8JCC	Human histone H2B variant H2BFWT Cryo-EM structure with 601 DNA sequence 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type W-T, ... 著者 Ding, D.B, Ishibashi, T. 登録日 2023-05-10 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.42 Å) 主引用文献 Human histone H2B variant H2BFWT Cryo-EM structure with 601 DNA sequence To Be Published
2QFG	Solution Structure of the N-terminal SCR-1/5 fragment of Complement Factor H. 分子名称: Complement factor H 著者 Okemefuna, A.I, Gilbert, H.E, Griggs, K.M, Ormsby, R.J, Gordon, D.L, Perkins, S.J. 登録日 2007-06-27 公開日 2007-09-25 最終更新日 2024-02-21 実験手法 SOLUTION SCATTERING 主引用文献 The regulatory SCR-1/5 and cell surface-binding SCR-16/20 fragments of factor H reveal partially folded-back solution structures and different self-associative properties. J.Mol.Biol., 375, 2008
6MBG	GphF Dehydratase P1711L variant for improved crystallization 分子名称: 1,4-BUTANEDIOL, GphF, MAGNESIUM ION 著者 Dodge, G.J, Smith, J.L. 登録日 2018-08-29 公開日 2018-09-19 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.852 Å) 主引用文献 Molecular Basis for Olefin Rearrangement in the Gephyronic Acid Polyketide Synthase. ACS Chem. Biol., 13, 2018
8JCD	Human H2BFWTH100R nucleosome with 601 DNA 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type W-T, ... 著者 Ding, D.B, Ishibashi, T, Nguyen, T.T. 登録日 2023-05-11 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.14 Å) 主引用文献 Human H2BFWTH100R nucleosome with 601 DNA to be published
8JBX	Human canonical 601 DNA nucleosome 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-C/E/F/G/I, ... 著者 Ding, D.B, Ishibashi, T, Nguyen, T.T. 登録日 2023-05-09 公開日 2024-05-15 実験手法 ELECTRON MICROSCOPY (3.35 Å) 主引用文献 Human canonical 601 DNA nucleosome to be published
6LTS	Crystal structure of Thermus thermophilus transcription initiation complex comprising a truncated sigma finger 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Zhang, Y, Ebright, R.H. 登録日 2020-01-23 公開日 2020-03-11 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.45 Å) 主引用文献 RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
7ROZ	Structure of RNA-dependent RNA polymerase 2 (RDR2) from Arabidopsis thaliana 分子名称: MAGNESIUM ION, RNA-dependent RNA polymerase 2 著者 Fukudome, A, Pikaard, C.S, Takagi, Y. 登録日 2021-08-02 公開日 2021-12-08 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2. Proc.Natl.Acad.Sci.USA, 118, 2021
7RQS	Arabidopsis RNA-dependent RNA polymerase 2 分子名称: MAGNESIUM ION, RNA-dependent RNA polymerase 2 著者 Fukudome, A, Pikaard, C.S, Takagi, Y. 登録日 2021-08-07 公開日 2021-12-08 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.57 Å) 主引用文献 Structure and RNA template requirements of Arabidopsis RNA-DEPENDENT RNA POLYMERASE 2. Proc.Natl.Acad.Sci.USA, 118, 2021
6M4G	Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2 分子名称: DNA (93-MER), Histone H2A-Bbd type 2/3, Histone H2B type 2-E, ... 著者 Zhou, M, Dai, L.C, Li, C.M, Shi, L.X, Huang, Y, Guo, Z.Q. 登録日 2020-03-06 公開日 2020-09-23 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Structural basis of nucleosome dynamics modulation by histone variants H2A.B and H2A.Z.2.2. Embo J., 40, 2021
6MBF	GphF Dehydratase 1 分子名称: GphF Dehydratase 1, MAGNESIUM ION 著者 Dodge, G.J, Smith, J.L. 登録日 2018-08-29 公開日 2018-09-19 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.543 Å) 主引用文献 Molecular Basis for Olefin Rearrangement in the Gephyronic Acid Polyketide Synthase. ACS Chem. Biol., 13, 2018
2QCU	Crystal structure of Glycerol-3-phosphate Dehydrogenase from Escherichia coli 分子名称: 1,2-ETHANEDIOL, Aerobic glycerol-3-phosphate dehydrogenase, FLAVIN-ADENINE DINUCLEOTIDE, ... 著者 Yeh, J.I, Chinte, U, Du, S. 登録日 2007-06-19 公開日 2008-04-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structure of glycerol-3-phosphate dehydrogenase, an essential monotopic membrane enzyme involved in respiration and metabolism. Proc.Natl.Acad.Sci.Usa, 105, 2008
7RJZ	BthTX-II variant a, from Bothrops jararacussu venom, complexed with benzoic acid 分子名称: BENZOIC ACID, BthTX-IIa 著者 Borges, R.J, Fontes, M.R.M. 登録日 2021-07-21 公開日 2022-01-05 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 BthTX-II from Bothrops jararacussu venom has variants with different oligomeric assemblies: An example of snake venom phospholipases A 2 versatility. Int.J.Biol.Macromol., 191, 2021
6LKZ	Crystal structure of isocitrate dehydrogenase 1 from Phaeodactylum tricornutum 分子名称: isocitrate dehydrogenase 著者 Zhu, G.P. 登録日 2019-12-21 公開日 2020-12-23 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Biochemical Characterization and Crystal Structure of a Novel NAD+ -Dependent Isocitrate Dehydrogenase from Phaeodactylum tricornutum. Int J Mol Sci, 21, 2020
2QO8	Crystal structure of the complex of hcaii with an indane-sulfonamide inhibitor 分子名称: Carbonic anhydrase 2, GLYCEROL, MERCURIBENZOIC ACID, ... 著者 D'Ambrosio, K, De Simone, G. 登録日 2007-07-20 公開日 2008-01-22 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Carbonic Anhydrase Inhibitors: Binding of Indanesulfonamides to the Human Isoform II. Chemmedchem, 3, 2007
8EB2	Structure of HLA-A*02:01 in complex with NY-ESO-1 peptide and PA2.1 Fab 分子名称: Beta-2-microglobulin, HLA-A*02:01 alpha chain, NY-ESO-1 peptide, ... 著者 Jette, C.A, West, A.P. 登録日 2022-08-30 公開日 2022-11-30 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 HLA-A∗02-gated safety switch for cancer therapy has exquisite specificity for its allelic target antigen. Mol Ther Oncolytics, 27, 2022
6LX1	Potato D-enzyme complexed with Acarbose 分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-1,5-anhydro-D-glucitol, 4-alpha-glucanotransferase, chloroplastic/amyloplastic, ... 著者 Unno, H, Imamura, K. 登録日 2020-02-10 公開日 2020-08-26 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Structural analysis and reaction mechanism of the disproportionating enzyme (D-enzyme) from potato. Protein Sci., 29, 2020
6MBH	GphF DH1 P1711L, L1744P variant: An isomerase-inactive variant of GphF DH1 分子名称: GphF Dehydratase 1 著者 Dodge, G.J, Smith, J.L. 登録日 2018-08-29 公開日 2018-09-19 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Molecular Basis for Olefin Rearrangement in the Gephyronic Acid Polyketide Synthase. ACS Chem. Biol., 13, 2018
8JLB	Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.36 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
8JL9	Cryo-EM structure of the human nucleosome with scFv 分子名称: DNA (193-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.65 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
8JLD	Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Oishi, T, Hatazawa, S, Kujirai, T, Kato, J, Kobayashi, Y, Ogasawara, M, Akatsu, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-02 公開日 2023-10-04 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (2.48 Å) 主引用文献 Contributions of histone tail clipping and acetylation in nucleosome transcription by RNA polymerase II. Nucleic Acids Res., 51, 2023
6M4H	Structural mechanism of nucleosome dynamics governed by human histone variants H2A.B and H2A.Z.2.2 分子名称: DNA (103-MER), Histone H2A-Bbd type 2/3, Histone H2B type 2-E, ... 著者 Zhou, M, Dai, L.C, Li, C.M, Shi, L.X, Huang, Y, Guo, Z.Q. 登録日 2020-03-07 公開日 2020-09-23 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structural basis of nucleosome dynamics modulation by histone variants H2A.B and H2A.Z.2.2. Embo J., 40, 2021
8KB5	Cryo-EM structure of the human nucleosome containing H3.8 分子名称: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Hirai, H, Kujirai, T, Takizawa, Y, Kurumizaka, H. 登録日 2023-08-03 公開日 2023-10-18 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.26133 Å) 主引用文献 Cryo-EM and biochemical analyses of the nucleosome containing the human histone H3 variant H3.8. J.Biochem., 174, 2023
6M44	355 bp di-nucleosome harboring cohesive DNA termini (high cryoprotectant) 分子名称: CALCIUM ION, DNA (355-MER), Histone H2A type 1-B/E, ... 著者 Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. 登録日 2020-03-05 公開日 2020-10-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (3.81 Å) 主引用文献 Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020
6LTJ	Structure of nucleosome-bound human BAF complex 分子名称: AT-rich interactive domain-containing protein 1A, Actin, cytoplasmic 1, ... 著者 He, S, Wu, Z, Tian, Y, Yu, Z, Yu, J, Wang, X, Li, J, Liu, B, Xu, Y. 登録日 2020-01-22 公開日 2020-02-12 最終更新日 2024-05-29 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structure of nucleosome-bound human BAF complex. Science, 367, 2020
6M3V	355 bp di-nucleosome harboring cohesive DNA termini 分子名称: CALCIUM ION, DNA (355-MER), Histone H2A type 1-B/E, ... 著者 Adhireksan, Z, Sharma, D, Lee, P.L, Davey, C.A. 登録日 2020-03-04 公開日 2020-10-07 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (4.6 Å) 主引用文献 Near-atomic resolution structures of interdigitated nucleosome fibres. Nat Commun, 11, 2020

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