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6JAZ
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BU of 6jaz by Molmil
Crystal structure of ABC transporter alpha-glycoside-binding mutant protein W287F in complex with trehalose
分子名称: 1,2-ETHANEDIOL, ABC transporter, periplasmic substrate-binding protein, ...
著者Kanaujia, S.P, Chandravanshi, M, Gogoi, P.
登録日2019-01-25
公開日2019-10-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural and thermodynamic correlation illuminates the selective transport mechanism of disaccharide alpha-glycosides through ABC transporter.
Febs J., 287, 2020
6RKV
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BU of 6rkv by Molmil
E. coli DNA Gyrase - DNA binding and cleavage domain in State 2
分子名称: DNA Strand 1, DNA Strand 2, DNA gyrase subunit A, ...
著者Vanden Broeck, A, Lamour, V.
登録日2019-04-30
公開日2019-11-06
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex.
Nat Commun, 10, 2019
6RVS
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BU of 6rvs by Molmil
Atomic structure of the Epstein-Barr portal, structure II
分子名称: Portal protein
著者Machon, C, Fabrega-Ferrer, M, Zhou, D, Cuervo, A, Carrascosa, J.L, Stuart, D.I, Coll, M.
登録日2019-05-31
公開日2019-09-18
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.59 Å)
主引用文献Atomic structure of the Epstein-Barr virus portal.
Nat Commun, 10, 2019
6HSX
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BU of 6hsx by Molmil
Thrombin in Complex with a D-Phe-Pro-diaminopyridine derivative
分子名称: (2~{S})-1-[(2~{R})-2-azanyl-3-phenyl-propanoyl]-~{N}-[[2,6-bis(azanyl)pyridin-4-yl]methyl]pyrrolidine-2-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, ...
著者Ngo, K, Heine, A, Klebe, G.
登録日2018-10-02
公開日2019-10-23
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Protein-Induced Change in Ligand Protonation during Trypsin and Thrombin Binding: Hint on Differences in Selectivity Determinants of Both Proteins?
J.Med.Chem., 63, 2020
6S6X
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BU of 6s6x by Molmil
Structure of Azospirillum brasilense Glutamate Synthase in a6b6 oligomeric state.
分子名称: FE3-S4 CLUSTER, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Chaves-Sanjuan, A, Camilloni, C, Bolognesi, M.
登録日2019-07-03
公開日2019-09-11
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM Structures of Azospirillum brasilense Glutamate Synthase in Its Oligomeric Assemblies.
J.Mol.Biol., 431, 2019
6RKU
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BU of 6rku by Molmil
E. coli DNA Gyrase - DNA binding and cleavage domain in State 1
分子名称: (3~{R})-3-[[4-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)piperidin-1-yl]methyl]-1,4,7-triazatricyclo[6.3.1.0^{4,12}]dodeca-6,8(12),9-triene-5,11-dione, DNA Strand 1, DNA Strand 2, ...
著者Vanden Broeck, A, Lamour, V.
登録日2019-04-30
公開日2019-11-06
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex.
Nat Commun, 10, 2019
6RLT
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BU of 6rlt by Molmil
Trypanosoma brucei Seryl-tRNA Synthetase in Complex with 5'-O-(N-(L-seryl)-Sulfamoyl)uridine
分子名称: 5'-O-(N-(L-seryl)-Sulfamoyl)uridine, GLYCEROL, MALONATE ION, ...
著者Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
登録日2019-05-02
公開日2020-01-08
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural Insights into the Binding of Natural Pyrimidine-Based Inhibitors of Class II Aminoacyl-tRNA Synthetases.
Acs Chem.Biol., 15, 2020
6RN3
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BU of 6rn3 by Molmil
ClpB (DWB mutant) bound to casein in presence of ATPgammaS - state WT-2A
分子名称: ADENOSINE-5'-DIPHOSPHATE, Chaperone protein ClpB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
著者Deville, C, Saibil, H.R.
登録日2019-05-07
公開日2019-07-03
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Two-Step Activation Mechanism of the ClpB Disaggregase for Sequential Substrate Threading by the Main ATPase Motor.
Cell Rep, 27, 2019
6H9X
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BU of 6h9x by Molmil
Klebsiella pneumoniae Seryl-tRNA Synthetase in Complex with the Intermediate Analog 5'-O-(N-(L-Seryl)-Sulfamoyl)Adenosine
分子名称: 1,2-ETHANEDIOL, 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, CALCIUM ION, ...
著者Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D.
登録日2018-08-06
公開日2019-05-15
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Acylated sulfonamide adenosines as potent inhibitors of the adenylate-forming enzyme superfamily.
Eur.J.Med.Chem., 174, 2019
6RQH
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BU of 6rqh by Molmil
RNA Polymerase I Closed Conformation 1 (CC1)
分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ...
著者Mueller, C.W, Sadian, Y, Tafur, L.
登録日2019-05-15
公開日2019-12-11
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Molecular insight into RNA polymerase I promoter recognition and promoter melting.
Nat Commun, 10, 2019
6I7O
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BU of 6i7o by Molmil
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
著者Tesina, P, Cheng, J, Becker, T, Beckmann, R.
登録日2018-11-16
公開日2019-01-16
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (5.3 Å)
主引用文献Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways.
EMBO J., 38, 2019
6RWE
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BU of 6rwe by Molmil
RNA Polymerase I Open Complex conformation 2
分子名称: DNA-directed RNA polymerase I subunit RPA12, DNA-directed RNA polymerase I subunit RPA135, DNA-directed RNA polymerase I subunit RPA14, ...
著者Mueller, C.W, Sadian, Y, Tafur, L.
登録日2019-06-04
公開日2019-12-11
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Molecular insight into RNA polymerase I promoter recognition and promoter melting.
Nat Commun, 10, 2019
6S3L
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BU of 6s3l by Molmil
Structure of the core of the flagellar export apparatus from Vibrio mimicus, the FliPQR-FlhB complex.
分子名称: Flagellar biosynthetic protein FlhB, Flagellar biosynthetic protein FliP, Flagellar biosynthetic protein FliQ, ...
著者Kuhlen, L, Johnson, S, Deme, J.C, Lea, S.M.
登録日2019-06-25
公開日2020-03-25
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The substrate specificity switch FlhB assembles onto the export gate to regulate type three secretion.
Nat Commun, 11, 2020
3AKC
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BU of 3akc by Molmil
Crystal structure of CMP kinase in complex with CDP and ADP from Thermus thermophilus HB8
分子名称: ADENOSINE-5'-DIPHOSPHATE, CYTIDINE-5'-DIPHOSPHATE, Cytidylate kinase, ...
著者Mega, R, Nakagawa, N, Kuramitsu, S, Masui, R.
登録日2010-07-12
公開日2011-07-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The crystal structure of the tertiary complex of CMP kinase with a phosphoryl group acceptor and a donor from Thermus thermophilus HB8
To be Published
6IOK
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BU of 6iok by Molmil
Cryo-EM structure of multidrug efflux pump MexAB-OprM (0 degree state)
分子名称: Multidrug resistance protein MexA, Multidrug resistance protein MexB, Outer membrane protein OprM
著者Tsutsumi, K, Yonehara, R, Nakagawa, A, Yamashita, E.
登録日2018-10-30
公開日2019-04-03
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.64 Å)
主引用文献Structures of the wild-type MexAB-OprM tripartite pump reveal its complex formation and drug efflux mechanism.
Nat Commun, 10, 2019
6S29
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BU of 6s29 by Molmil
Structure of fission yeast Mis16-Mis19 complex
分子名称: BROMIDE ION, CENP-A recruiting complex protein mis19, Histone acetyltransferase type B subunit 2
著者Lefevre, S, Korntner-Vetter, M, Singleton, M.R.
登録日2019-06-20
公開日2019-08-07
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.988 Å)
主引用文献Subunit interactions and arrangements in the fission yeast Mis16-Mis18-Mis19 complex.
Life Sci Alliance, 2, 2019
6IRF
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BU of 6irf by Molmil
Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 6.3, Class I
分子名称: Glutamate receptor ionotropic, NMDA 1, NMDA 2A
著者Zhang, J, Chang, S, Zhang, X, Zhu, S.
登録日2018-11-12
公開日2019-01-16
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (5.1 Å)
主引用文献Structural Basis of the Proton Sensitivity of Human GluN1-GluN2A NMDA Receptors
Cell Rep, 25, 2018
3AJE
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BU of 3aje by Molmil
Crystal structure of S. tokodaii Sua5 complexed with L-threonine and AMPPNP
分子名称: NITRATE ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Putative uncharacterized protein ST1526, ...
著者Kuratani, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2010-06-01
公開日2011-04-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of Sulfolobus tokodaii Sua5 complexed with L-threonine and AMPPNP
Proteins, 79, 2011
6S3R
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BU of 6s3r by Molmil
Structure of the FliPQR complex from the flagellar type 3 secretion system of Pseudomonas savastanoi.
分子名称: Flagellar biosynthetic protein FliP, Flagellar biosynthetic protein FliQ, Flagellar biosynthetic protein FliR
著者Kuhlen, L, Johnson, S, Deme, J.C, Lea, S.M.
登録日2019-06-25
公開日2020-03-25
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献The substrate specificity switch FlhB assembles onto the export gate to regulate type three secretion.
Nat Commun, 11, 2020
6S6T
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BU of 6s6t by Molmil
Structure of Azospirillum brasilense Glutamate Synthase in a4b3 oligomeric state
分子名称: FE3-S4 CLUSTER, FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Chaves-Sanjuan, A, Bolognesi, M.
登録日2019-07-03
公開日2019-09-11
最終更新日2025-04-09
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Cryo-EM Structures of Azospirillum brasilense Glutamate Synthase in Its Oligomeric Assemblies.
J.Mol.Biol., 431, 2019
6JMN
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BU of 6jmn by Molmil
Crystal structure of Ostrinia furnacalis Chitinase h complexed with compound 2-8-s2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-azanyl-11-methyl-2-oxidanylidene-7-[[(2R)-oxolan-2-yl]methyl]-N-(pyridin-3-ylmethyl)-1,9-diaza-7-azoniatricyclo[8.4.0.0^{3,8}]tetradeca-3(8),4,6,9,11,13-hexaene-5-carboxamide, Chitinase
著者Jiang, X, Yang, Q.
登録日2019-03-12
公開日2020-05-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A Series of Compounds Bearing a Dipyrido-Pyrimidine Scaffold Acting as Novel Human and Insect Pest Chitinase Inhibitors.
J.Med.Chem., 63, 2020
6RLP
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BU of 6rlp by Molmil
Cryo-EM reconstruction of TMV coat protein
分子名称: Capsid protein, RNA (5'-R(P*GP*AP*A)-3')
著者Kandiah, E, Effantin, G.
登録日2019-05-02
公開日2022-11-23
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献CM01: a facility for cryo-electron microscopy at the European Synchrotron.
Acta Crystallogr D Struct Biol, 75, 2019
6SCU
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BU of 6scu by Molmil
THERMOLYSIN IN COMPLEX WITH FRAGMENT J88
分子名称: 4-diazanyl-4-oxidanylidene-butanoic acid, CALCIUM ION, DIMETHYL SULFOXIDE, ...
著者Magari, F, Heine, A, Klebe, G.
登録日2019-07-25
公開日2020-08-26
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献THERMOLYSIN IN COMPLEX WITH FRAGMENT J88
To Be Published
6SD1
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BU of 6sd1 by Molmil
Structure of the RBM3/collar region of the Salmonella flagella MS-ring protein FliF with 33-fold symmetry applied
分子名称: Flagellar M-ring protein
著者Johnson, S, Fong, Y.H, Deme, J.C, Furlong, E.J, Kuhlen, L, Lea, S.M.
登録日2019-07-26
公開日2020-03-18
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Symmetry mismatch in the MS-ring of the bacterial flagellar rotor explains the structural coordination of secretion and rotation.
Nat Microbiol, 5, 2020
6SCN
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BU of 6scn by Molmil
33mer structure of the Salmonella flagella MS-ring protein FliF
分子名称: Flagellar M-ring protein
著者Johnson, S, Fong, Y.H, Deme, J.C, Furlong, E.J, Kuhlen, L, Lea, S.M.
登録日2019-07-24
公開日2020-03-18
最終更新日2024-05-22
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Symmetry mismatch in the MS-ring of the bacterial flagellar rotor explains the structural coordination of secretion and rotation.
Nat Microbiol, 5, 2020

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