PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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8IK4	Structure of DNA binding domain of McrBC endonuclease bound to hemimethylated DNA: L68F mutant 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*AP*GP*AP*(5CM)P*CP*GP*GP*TP*AP*G)-3'), DNA (5'-D(*CP*TP*AP*CP*CP*GP*GP*TP*CP*T)-3'), ... 著者 Adhav, V.A, Saikrishnan, K. 登録日 2023-02-28 公開日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
8IJP	Structure of DNA binding domain of McrBC endonuclease bound to DNA: L68Y mutant 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*AP*GP*AP*CP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3'), ... 著者 Adhav, V.A, Saikrishnan, K. 登録日 2023-02-27 公開日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structural basis of target recognition by the DNA binding domain of McrBC To Be Published
1D86	STRUCTURAL CONSEQUENCES OF A CARCINOGENIC ALKYLATION LESION ON DNA: EFFECT OF O6-ETHYL-GUANINE ON THE MOLECULAR STRUCTURE OF D(CGC[E6G]AATTCGCG)-NETROPSIN COMPLEX 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), NETROPSIN 著者 Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. 登録日 1992-08-24 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. Biochemistry, 31, 1992
3REK	2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin 分子名称: DNA (146-MER), Histone H2A type1, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2011-04-04 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
3REJ	2.55 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) 分子名称: DNA (146-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2011-04-04 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
1AFF	DNA QUADRUPLEX CONTAINING GGGG TETRADS AND (T.A).A TRIADS, NMR, 8 STRUCTURES 分子名称: QUADRUPLEX DNA (5'-D(TP*AP*GP*G)-3') 著者 Kettani, A, Bouaziz, S, Wang, W, Jones, R.A, Patel, D.J. 登録日 1997-03-06 公開日 1997-08-20 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Bombyx mori single repeat telomeric DNA sequence forms a G-quadruplex capped by base triads. Nat.Struct.Biol., 4, 1997
3REI	2.65 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) Derivatized with Triamminechloroplatinum(II) Chloride 分子名称: DNA (145-MER), Histone H2A type1, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2011-04-04 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
1RVC	MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*T)-3'), DNA (5'-D(*AP*TP*CP*TP*T)-3'), MAGNESIUM ION, ... 著者 Kostrewa, D, Winkler, F.K. 登録日 1994-10-21 公開日 1995-01-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution. Biochemistry, 34, 1995
3REH	2.5 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2011-04-04 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
1D80	CRYSTAL STRUCTURE OF AN OLIGONUCLEOTIDE DUPLEX CONTAINING G.G BASE-PAIRS: THE INFLUENCE OF MISPAIRING ON DNA BACKBONE CONFORMATION 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*GP*GP*CP*G)-3') 著者 Skelly, J.V, Edwards, K.J, Jenkins, T.C, Neidle, S. 登録日 1992-06-17 公開日 1993-07-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of an oligonucleotide duplex containing G.G base pairs: influence of mispairing on DNA backbone conformation. Proc.Natl.Acad.Sci.USA, 90, 1993
8QKT	Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment 分子名称: DNA (167-MER), Histone H2A, Histone H2B type 1-J, ... 著者 Ma, Z, Davey, C.A. 登録日 2023-09-17 公開日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.261 Å) 主引用文献 Structure of a nucleosome composed of a palindromic 167-base pair blunt-ended DNA fragment To Be Published
1RVB	MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), MAGNESIUM ION, PROTEIN (ECO RV (E.C.3.1.21.4)) 著者 Kostrewa, D, Winkler, F.K. 登録日 1994-10-21 公開日 1995-01-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution. Biochemistry, 34, 1995
2BPA	ATOMIC STRUCTURE OF SINGLE-STRANDED DNA BACTERIOPHAGE PHIX174 AND ITS FUNCTIONAL IMPLICATIONS 分子名称: DNA (5'-D(*AP*AP*AP*AP*C)-3'), PROTEIN (SUBUNIT OF BACTERIOPHAGE PHIX174) 著者 McKenna, R, Xia, D, Willingmann, P, Ilag, L.L, Krishnaswamy, S, Rossmann, M.G, Olson, N.H, Baker, T.S, Incardona, N.L. 登録日 1991-12-03 公開日 1991-12-03 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Atomic structure of single-stranded DNA bacteriophage phi X174 and its functional implications. Nature, 355, 1992
4AWN	Structure of recombinant human DNase I (rhDNaseI) in complex with Magnesium and Phosphate. 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Parsiegla, G, Noguere, C, Santell, L, Lazarus, R.A, Bourne, Y. 登録日 2012-06-04 公開日 2013-01-09 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The Structure of Human DNase I Bound to Magnesium and Phosphate Ions Points to a Catalytic Mechanism Common to Members of the DNase I-Like Superfamily. Biochemistry, 51, 2012
10MH	TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET 分子名称: DNA (5'-D(P*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3'), DNA (5'-D(P*GP*TP*CP*AP*GP*5NCP*GP*CP*AP*TP*GP*G)-3'), PROTEIN (CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI), ... 著者 Sheikhnejad, G, Brank, A, Christman, J.K, Goddard, A, Alvarez, E, Ford Junior, H, Marquez, V.E, Marasco, C.J, Sufrin, J.R, O'Gara, M, Cheng, X. 登録日 1998-08-10 公開日 1999-02-09 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Mechanism of inhibition of DNA (cytosine C5)-methyltransferases by oligodeoxyribonucleotides containing 5,6-dihydro-5-azacytosine. J.Mol.Biol., 285, 1999
1D29	CRYSTAL STRUCTURE ANALYSIS OF THE B-DNA DODECAMER CGTGAATTCACG 分子名称: DNA (5'-D(*CP*GP*TP*GP*AP*AP*TP*TP*CP*AP*CP*G)-3') 著者 Larsen, T.A, Kopka, M.L, Dickerson, R.E. 登録日 1991-05-23 公開日 1992-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure analysis of the B-DNA dodecamer CGTGAATTCACG. Biochemistry, 30, 1991
1RVA	MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), PROTEIN (ECO RV (E.C.3.1.21.4)) 著者 Kostrewa, D, Winkler, F.K. 登録日 1994-10-21 公開日 1995-01-26 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Mg2+ binding to the active site of EcoRV endonuclease: a crystallographic study of complexes with substrate and product DNA at 2 A resolution. Biochemistry, 34, 1995
6TZQ	A DNA G-quadruplex/i-motif hybrid 分子名称: BARIUM ION, DNA (5'-D(*CP*CP*AP*GP*GP*CP*TP*GP*CP*AP*A)-3') 著者 Chu, B, Paukstelis, P.J. 登録日 2019-08-13 公開日 2019-10-16 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 A DNA G-quadruplex/i-motif hybrid. Nucleic Acids Res., 47, 2019
6TZR	A DNA G-quadruplex/i-motif hybrid 分子名称: BARIUM ION, DNA (5'-D(*CP*CP*AP*GP*GP*CP*(BRU)P*GP*CP*AP*A)-3') 著者 Chu, B, Paukstelis, P.J. 登録日 2019-08-13 公開日 2019-10-16 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 A DNA G-quadruplex/i-motif hybrid. Nucleic Acids Res., 47, 2019
1OIS	YEAST DNA TOPOISOMERASE I, N-TERMINAL FRAGMENT 分子名称: DNA TOPOISOMERASE I 著者 Lue, N, Sharma, A, Mondragon, A, Wang, J.C. 登録日 1996-09-14 公開日 1997-03-12 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A 26 kDa yeast DNA topoisomerase I fragment: crystallographic structure and mechanistic implications. Structure, 3, 1995
238D	CRYSTAL STRUCTURE OF THE DNA DECAMER D(AGG(BR)CATGCCT): COMPARISON WITH D(AGGCATGCCT) AND IMPLICATIONS FOR COBALT HEXAMMINE BINDING TO DNA 分子名称: DNA (5'-D(*AP*GP*GP*(CBR)P*AP*TP*GP*CP*CP*T)-3') 著者 Nunn, C.M. 登録日 1995-11-02 公開日 1996-01-30 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of d(AGGBrCATGCCT): implications for cobalt hexammine binding to DNA J.Biomol.Struct.Dyn., 14, 1996
1DGS	CRYSTAL STRUCTURE OF NAD+-DEPENDENT DNA LIGASE FROM T. FILIFORMIS 分子名称: ADENOSINE MONOPHOSPHATE, DNA LIGASE, ZINC ION 著者 Lee, J.Y, Chang, C, Song, H.K, Kwon, S.T, Suh, S.W. 登録日 1999-11-25 公開日 2000-11-27 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. EMBO J., 19, 2000
6ZYC	Solution structure of the C-terminal domain of the vaccinia virus DNA polymerase processivity factor component A20. 分子名称: DNA polymerase processivity factor component A20 著者 Bersch, B, Iseni, F, Burmeister, W, Tarbouriech, N. 登録日 2020-07-31 公開日 2021-05-19 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Solution Structure of the C-terminal Domain of A20, the Missing Brick for the Characterization of the Interface between Vaccinia Virus DNA Polymerase and its Processivity Factor. J.Mol.Biol., 433, 2021
1PU6	Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 3-METHYLADENINE DNA GLYCOSYLASE, BETA-MERCAPTOETHANOL, ... 著者 Eichman, B.F, O'Rourke, E.J, Radicella, J.P, Ellenberger, T. 登録日 2003-06-24 公開日 2003-10-07 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases Embo J., 22, 2003
1PU7	Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII) bound to 3,9-dimethyladenine 分子名称: 3-METHYLADENINE DNA GLYCOSYLASE, 6-AMINO-3,9-DIMETHYL-9H-PURIN-3-IUM, BETA-MERCAPTOETHANOL 著者 Eichman, B.F, O'Rourke, E.J, Radicella, J.P, Ellenberger, T. 登録日 2003-06-24 公開日 2003-10-07 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases Embo J., 22, 2003

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