PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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7U3Q	[4T7] Self-assembling tensegrity triangle with four turns of DNA per axis with R3 symmetry 分子名称: DNA (29-MER), DNA (42-MER), DNA (5'-D(P*AP*CP*A)-3'), ... 著者 Woloszyn, K, Vecchioni, S, Lu, B, Ma, Y, Seeman, N.C, Sha, R, Ohayon, Y.P, Huang, Q. 登録日 2022-02-28 公開日 2022-09-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (9.32 Å) 主引用文献 Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
7U44	[F344] Self-assembling tensegrity triangle with three turns, four turns and four turns of DNA per axis by extension with P1 symmetry 分子名称: DNA (31-MER), DNA (35-MER), DNA (42-MER), ... 著者 Woloszyn, K, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-02-28 公開日 2022-09-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (8.46 Å) 主引用文献 Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
6X0M	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin 分子名称: DNA (167-MER), Histone PARylation factor 1, Poly [ADP-ribose] polymerase 2 著者 Halic, M, Bilokapic, S. 登録日 2020-05-16 公開日 2020-09-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (6.3 Å) 主引用文献 Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin. Nature, 585, 2020
6X0L	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin 分子名称: DNA (167-MER), Histone PARylation factor 1, Poly [ADP-ribose] polymerase 2 著者 Halic, M, Bilokapic, S. 登録日 2020-05-16 公開日 2020-09-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin. Nature, 585, 2020
6H1V	The crystal structure of Pol2CORE in complex with DNA and an incoming nucleotide, carrying an Fe-S cluster 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(P*AP*AP*TP*TP*GP*AP*AP*CP*GP*CP*GP*GP*TP*TP*A)-3'), DNA (5'-D(P*TP*AP*AP*CP*CP*GP*CP*GP*TP*TP*(DOC))-3'), ... 著者 Parkash, V, Johansson, E. 登録日 2018-07-12 公開日 2019-04-24 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural evidence for an essential Fe-S cluster in the catalytic core domain of DNA polymerase ε. Nucleic Acids Res., 47, 2019
3IFI	2'-SeMe-dG modified octamer DNA 分子名称: DNA (5'-D(*GP*TP*(XUG)P*TP*AP*CP*AP*C)-3') 著者 Sheng, J, Gan, J, Salon, J, Huang, Z. 登録日 2009-07-24 公開日 2009-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.2 Å) 主引用文献 Synthesis and crystal structure of 2'-se-modified guanosine containing DNA. J.Org.Chem., 75, 2010
6X0N	Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin 分子名称: DNA (167-MER), Histone H2A, Histone H2B 1.1, ... 著者 Halic, M, Bilokapic, S. 登録日 2020-05-16 公開日 2020-09-16 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Bridging of DNA breaks activates PARP2-HPF1 to modify chromatin. Nature, 585, 2020
8HT7	The N-terminal region of Cdc6 specifically recognizes human DNA G-quadruplex 分子名称: DNA (5'-D(*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*TP*GP*GP*G)-3'), GLN-ALA-GLN-ALA-THR-ILE-SER-PHE-PRO-LYS-ARG-LYS-LEU-SER-TRP 著者 Liu, C, Zhu, G, Geng, Y, Xu, N. 登録日 2022-12-20 公開日 2023-12-27 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The N-terminal region of Cdc6 specifically recognizes human DNA G-quadruplex. Int.J.Biol.Macromol., 260, 2024
252D	CRYSTAL STRUCTURE OF THE B-DNA DECAMER D(CGCAATTGCG)2; SEQUENCE-DEPENDENT CROSSED HELIX PACKING 分子名称: DNA (5'-D(*CP*GP*CP*AP*AP*TP*TP*GP*CP*G)-3') 著者 Wood, A.A, Nunn, C.M, Trent, J.O, Neidle, S. 登録日 1996-03-07 公開日 1996-04-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Sequence-dependent crossed helix packing in the crystal structure of a B-DNA decamer yields a detailed model for the Holliday junction. J.Mol.Biol., 269, 1997
4E10	Protelomerase tela Y201A covalently complexed with substrate DNA 分子名称: DNA (5'-D(*CP*AP*TP*AP*AP*(BRU)P*AP*AP*CP*AP*AP*(BRU)P*AP*T)-3'), DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*(BRU)P*(BRU)P*GP*(BRU)P*(BRU)P*AP*(BRU)P*(BRU)P*AP*(BRU)P*G)-3'), Protelomerase, ... 著者 Shi, K, Aihara, H. 登録日 2012-03-05 公開日 2013-02-13 実験手法 X-RAY DIFFRACTION (2.506 Å) 主引用文献 An enzyme-catalyzed multistep DNA refolding mechanism in hairpin telomere formation. Plos Biol., 11, 2013
5M1L	Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene 分子名称: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)-3') 著者 Kocman, V, Plavec, J. 登録日 2016-10-09 公開日 2017-05-31 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Tetrahelical structural family adopted by AGCGA-rich regulatory DNA regions. Nat Commun, 8, 2017
431D	5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3' 分子名称: DNA (5'-D(*GP*GP*CP*CP*AP*AP*TP*TP*GP*G)-3'), MAGNESIUM ION 著者 Vlieghe, D, Turkenburg, J.P, Van Meervelt, L. 登録日 1998-10-09 公開日 1999-09-15 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.15 Å) 主引用文献 B-DNA at atomic resolution reveals extended hydration patterns. Acta Crystallogr.,Sect.D, 55, 1999
8CYM	[2T7+9bp Linker] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle with 9 bp Sticky-End Linker 分子名称: DNA (5'-D(*AP*CP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*C)-3'), DNA (5'-D(*GP*AP*TP*GP*CP*GP*AP*GP*T)-3'), DNA (5'-D(*GP*TP*AP*CP*TP*CP*GP*CP*A)-3'), ... 著者 Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R. 登録日 2022-05-24 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (7.76 Å) 主引用文献 Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles. Angew.Chem.Int.Ed.Engl., 62, 2023
8CYN	[2T7+20bp Linker] Self-Assembled 3D DNA Hexagonal Tensegrity Triangle with 20 bp Sticky-End Linker 分子名称: DNA (5'-D(*GP*CP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*T)-3'), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), ... 著者 Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R. 登録日 2022-05-24 公開日 2023-01-18 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (9.45 Å) 主引用文献 Programmable 3D Hexagonal Geometry of DNA Tensegrity Triangles. Angew.Chem.Int.Ed.Engl., 62, 2023
8D31	[AG/TC] Self-Assembled 3D DNA Cubic Tensegrity Triangle with 24 bp Arm Length 分子名称: DNA (5'-D(*AP*GP*GP*CP*CP*TP*AP*CP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*AP*G)-3'), DNA (5'-D(*AP*GP*GP*CP*CP*TP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*AP*G)-3'), DNA (5'-D(*TP*CP*CP*TP*GP*AP*TP*GP*T)-3'), ... 著者 Lu, B, Vecchioni, S, Ohayon, Y.P, Seeman, N.C, Mao, C, Sha, R. 登録日 2022-05-31 公開日 2023-01-25 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (7.45 Å) 主引用文献 Highly Symmetric, Self-Assembling 3D DNA Crystals with Cubic and Trigonal Lattices. Small, 19, 2023
1D49	THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G 分子名称: DNA (5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3'), MAGNESIUM ION 著者 Quintana, J.R, Grzeskowiak, K, Yanagi, K, Dickerson, R.E. 登録日 1991-09-17 公開日 1992-04-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G. J.Mol.Biol., 225, 1992
7U3P	[3T7] Self-assembling tensegrity triangle with three turns of DNA per axis with R3 symmetry 分子名称: DNA (31-MER), DNA (5'-D(P*CP*CP*GP*TP*AP*CP*A)-3'), DNA (5'-D(P*GP*GP*CP*TP*GP*C)-3'), ... 著者 Woloszyn, K, Vecchioni, S, Lu, B, Ma, Y, Seeman, N.C, Sha, R, Ohayon, Y.P. 登録日 2022-02-28 公開日 2022-09-28 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (6.06 Å) 主引用文献 Augmented DNA Nanoarchitectures: A Structural Library of 3D Self-Assembling Tensegrity Triangle Variants. Adv Mater, 34, 2022
166D	DRUG-DNA MINOR GROOVE RECOGNITION: CRYSTAL STRUCTURE OF GAMMA-OXAPENTAMIDINE COMPLEXED WITH D(CGCGAATTCGCG)2 分子名称: 1,5-DI(4-AMIDINOPHENOXY)-3-OXA-PENTANE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Nunn, C.M, Jenkins, T.C, Neidle, S. 登録日 1994-03-17 公開日 1994-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of gamma-oxapentamidine complexed with d(CGCGAATTCGCG)2. The effects of drug structural change on DNA minor-groove recognition. Eur.J.Biochem., 226, 1994
1D57	ALTERNATIVE STRUCTURES FOR ALTERNATING POLY(DA-DT) TRACTS: THE STRUCTURE OF THE B-DNA DECAMER C-G-A-T-A-T-A-T-C-G 分子名称: DNA (5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*CP*G)-3'), MAGNESIUM ION 著者 Yuan, H, Quintana, J, Dickerson, R.E. 登録日 1992-02-19 公開日 1992-09-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G. Biochemistry, 31, 1992
1SJK	A DUPLEX DNA WITH AN ABASIC SITE IN A DA TRACT, ALPHA FORM, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*TP*ORPP*TP*TP*GP*CP*G)-3') 著者 Wang, K.Y, Parker, S.A, Goljer, I, Bolton, P.H. 登録日 1997-07-22 公開日 1997-12-03 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a duplex DNA with an abasic site in a dA tract. Biochemistry, 36, 1997
1SJL	A DUPLEX DNA WITH AN ABASIC SITE IN A DA TRACT, BETA FORM, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*TP*(AAB)P*TP*TP*GP*CP*G)-3') 著者 Wang, K.Y, Parker, S.A, Goljer, I, Bolton, P.H. 登録日 1997-07-22 公開日 1997-12-03 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Solution structure of a duplex DNA with an abasic site in a dA tract. Biochemistry, 36, 1997
3REL	2.7 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Triamminechloroplatinum(II) Chloride 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Wu, B, Davey, C.A. 登録日 2011-04-04 公開日 2012-03-14 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Specific DNA structural attributes modulate platinum anticancer drug site selection and cross-link generation. Nucleic Acids Res., 39, 2011
6WRJ	Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J26 immobile Holliday junction 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*TP*TP*GP*AP*CP*AP*CP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*A)-3'), DNA (5'-D(P*GP*GP*TP*CP*TP*GP*C)-3'), ... 著者 Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. 登録日 2020-04-29 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.129 Å) 主引用文献 The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
6WRA	Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J34 immobile Holliday junction 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*AP*AP*GP*AP*CP*TP*CP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*G)-3'), DNA (5'-D(P*AP*GP*TP*CP*T)-3'), ... 著者 Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. 登録日 2020-04-29 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
6WR7	Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J33 immobile Holliday junction 分子名称: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*TP*TP*GP*AP*CP*AP*GP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*C)-3'), DNA (5'-D(P*AP*GP*TP*CP*TP*GP*C)-3'), ... 著者 Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. 登録日 2020-04-29 公開日 2021-07-14 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022

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