Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4NIW
DownloadVisualize
BU of 4niw by Molmil
Crystal structure of trypsiligase (K60E/N143H/Y151H/D189K trypsin) orthorhombic form
分子名称: CALCIUM ION, Cationic trypsin, GLYCEROL
著者Schoepfel, M, Parthier, C, Stubbs, M.T.
登録日2013-11-08
公開日2014-02-19
最終更新日2014-03-19
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献N-terminal protein modification by substrate-activated reverse proteolysis.
Angew.Chem.Int.Ed.Engl., 53, 2014
6CRZ
DownloadVisualize
BU of 6crz by Molmil
SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, C3 symmetry
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ...
著者Kirchdoerfer, R.N, Wang, N, Pallesen, J, Turner, H.L, Cottrell, C.A, McLellan, J.S, Ward, A.B.
登録日2018-03-19
公開日2018-04-11
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis.
Sci Rep, 8, 2018
4ICU
DownloadVisualize
BU of 4icu by Molmil
Ubiquitin-like domain of human tubulin folding cofactor E - crystal from A
分子名称: Tubulin-specific chaperone E
著者Janowski, R, Boutin, M, Zabala, J.C, Coll, M.
登録日2012-12-11
公開日2014-06-18
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The structure of the complex between alpha-tubulin, TBCE and TBCB reveals a tubulin dimer dissociation mechanism.
J.Cell.Sci., 128, 2015
5VFO
DownloadVisualize
BU of 5vfo by Molmil
Nucleotide-driven Triple-state Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome
分子名称: Proteasome subunit alpha type-1, Proteasome subunit alpha type-2, Proteasome subunit alpha type-3, ...
著者Zhu, Y, Wang, W.L, Yu, D, Ouyang, Q, Lu, Y, Mao, Y.
登録日2017-04-08
公開日2018-07-18
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural mechanism for nucleotide-driven remodeling of the AAA-ATPase unfoldase in the activated human 26S proteasome.
Nat Commun, 9, 2018
6CQ1
DownloadVisualize
BU of 6cq1 by Molmil
BCL6 BTB domain in complex with 15a
分子名称: 2-{6-({[2-(1H-indol-3-yl)ethyl]carbamothioyl}amino)-3-[(4-methylpiperazin-1-yl)methyl]-1H-indol-1-yl}-N-(propan-2-yl)acetamide, B-cell lymphoma 6 protein
著者Linhares, B.M, Cheng, H, Xue, F, Cierpicki, T.
登録日2018-03-14
公開日2019-03-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.69921041 Å)
主引用文献Identification of Thiourea-Based Inhibitors of the B-Cell Lymphoma 6 BTB Domain via NMR-Based Fragment Screening and Computer-Aided Drug Design.
J.Med.Chem., 61, 2018
5VNO
DownloadVisualize
BU of 5vno by Molmil
Crystal structure of Sec23a/Sec24a/Sec22
分子名称: Protein transport protein Sec23A, Protein transport protein Sec24A, Vesicle-trafficking protein SEC22b, ...
著者Ma, W, Goldberg, J.
登録日2017-05-01
公開日2017-07-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.905 Å)
主引用文献ER retention is imposed by COPII protein sorting and attenuated by 4-phenylbutyrate.
Elife, 6, 2017
4RE9
DownloadVisualize
BU of 4re9 by Molmil
Crystal structure of human insulin degrading enzyme (IDE) in complex with compound 71290
分子名称: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-fluoro-N-({1-[(2R)-4-(hydroxyamino)-1-(naphthalen-2-yl)-4-oxobutan-2-yl]-1H-1,2,3-triazol-5-yl}methyl)benzamide, ...
著者Liang, W.G, Deprez, R, Deprez, B, Tang, W.J.
登録日2014-09-22
公開日2015-09-30
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.908 Å)
主引用文献Catalytic site inhibition of insulin-degrading enzyme by a small molecule induces glucose intolerance in mice.
Nat Commun, 6, 2015
5VI8
DownloadVisualize
BU of 5vi8 by Molmil
Structure of a mycobacterium smegmatis transcription initiation complex with an upstream-fork promoter fragment
分子名称: 1,2-ETHANEDIOL, DNA (26-MER), DNA (31-MER), ...
著者Hubin, E.A, Campbell, E.A, Darst, S.A.
登録日2017-04-14
公開日2017-04-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.76 Å)
主引用文献Structural insights into the mycobacteria transcription initiation complex from analysis of X-ray crystal structures.
Nat Commun, 8, 2017
4QRI
DownloadVisualize
BU of 4qri by Molmil
2.35 Angstrom resolution crystal structure of hypoxanthine-guanine-xanthine phosphoribosyltransferase from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
分子名称: DI(HYDROXYETHYL)ETHER, Hypoxanthine-guanine-xanthine phosphoribosyltransferase, SULFATE ION
著者Halavaty, A.S, Minasov, G, Dubrovska, I, Flores, K.J, Shuvalova, L, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2014-07-01
公開日2014-07-16
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献2.35 Angstrom resolution crystal structure of hypoxanthine-guanine-xanthine phosphoribosyltransferase from Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
To be Published
1BGX
DownloadVisualize
BU of 1bgx by Molmil
TAQ POLYMERASE IN COMPLEX WITH TP7, AN INHIBITORY FAB
分子名称: TAQ DNA POLYMERASE, TP7 MAB
著者Murali, R, Sharkey, D.J, Daiss, J.L, Krishna Murthy, H.M.
登録日1998-06-02
公開日1998-10-14
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of Taq DNA polymerase in complex with an inhibitory Fab: the Fab is directed against an intermediate in the helix-coil dynamics of the enzyme.
Proc.Natl.Acad.Sci.USA, 95, 1998
5D7G
DownloadVisualize
BU of 5d7g by Molmil
Structure of human ATG5 E122D-ATG16L1 complex at 3.0 Angstroms
分子名称: Autophagy protein 5, Autophagy-related protein 16-1
著者Qiu, Y, Schulman, B.A.
登録日2015-08-13
公開日2016-02-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Mutation in ATG5 reduces autophagy and leads to ataxia with developmental delay.
Elife, 5, 2016
5D8Y
DownloadVisualize
BU of 5d8y by Molmil
2.05A resolution structure of iron bound BfrB (L68A E81A) from Pseudomonas aeruginosa
分子名称: ACETATE ION, FE (II) ION, Ferroxidase, ...
著者Lovell, S, Battaile, K.P, Wang, Y, Yao, H, Rivera, M.
登録日2015-08-18
公開日2015-09-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Characterization of the Bacterioferritin/Bacterioferritin Associated Ferredoxin Protein-Protein Interaction in Solution and Determination of Binding Energy Hot Spots.
Biochemistry, 54, 2015
4QR6
DownloadVisualize
BU of 4qr6 by Molmil
Human Aldose Reductase complexed with a ligand with an IDD structure (2-[2-(1,3-benzothiazol-2-ylmethylcarbamoyl)-5-fluoro-phenoxy]acetic acid) at 1.05 A
分子名称: Aldose reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, {2-[(1,3-benzothiazol-2-ylmethyl)carbamoyl]-5-fluorophenoxy}acetic acid
著者Rechlin, C, Heine, A, Klebe, G.
登録日2014-06-30
公開日2015-08-12
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献Aldose Reductase: How expensive is the opening of the specificity pocket? IDD ligands under investigation
To be Published
5D80
DownloadVisualize
BU of 5d80 by Molmil
Crystal Structure of Yeast V1-ATPase in the Autoinhibited Form
分子名称: V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit D, ...
著者Oot, R.A, Kane, P.M, Berry, E.A, Wilkens, S.
登録日2015-08-14
公開日2016-06-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (6.202 Å)
主引用文献Crystal structure of yeast V1-ATPase in the autoinhibited state.
Embo J., 35, 2016
4IIR
DownloadVisualize
BU of 4iir by Molmil
Crystal Structure of AMPPNP-bound Human PRPF4B kinase domain
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SULFATE ION, ...
著者Mechin, I, Haas, K, Chen, X, Zhang, Y, McLean, L.
登録日2012-12-20
公開日2013-08-28
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Evaluation of Cancer Dependence and Druggability of PRP4 Kinase Using Cellular, Biochemical, and Structural Approaches.
J.Biol.Chem., 288, 2013
4QTL
DownloadVisualize
BU of 4qtl by Molmil
Crystal structure of human carbonic anhydrase isozyme II with inhibitor
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 3-(benzylamino)-2,5,6-trifluoro-4-[(2-hydroxyethyl)sulfonyl]benzenesulfonamide, Carbonic anhydrase 2, ...
著者Smirnov, A, Manakova, E, Grazulis, S.
登録日2014-07-08
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Functionalization of Fluorinated Benzenesulfonamides and Their Inhibitory Properties toward Carbonic Anhydrases
Chemmedchem, 10, 2015
4NLE
DownloadVisualize
BU of 4nle by Molmil
Crystal structure of apo Adenylosuccinate Lyase from Mycobacterium smegmatis
分子名称: Adenylosuccinate lyase
著者Banerjee, S, Murthy, M.R.N.
登録日2013-11-14
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Structural and kinetic studies on adenylosuccinate lyase from Mycobacterium smegmatis and Mycobacterium tuberculosis provide new insights on the catalytic residues of the enzyme.
Febs J., 281, 2014
5VNI
DownloadVisualize
BU of 5vni by Molmil
Crystal structure of Sec23a/Sec24a/Sec22 complexed with a C-terminal FA sorting motif
分子名称: C-terminal FA, Protein transport protein Sec23A, Protein transport protein Sec24A, ...
著者Ma, W, Goldberg, J.
登録日2017-04-30
公開日2017-07-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.788 Å)
主引用文献ER retention is imposed by COPII protein sorting and attenuated by 4-phenylbutyrate.
Elife, 6, 2017
3QDN
DownloadVisualize
BU of 3qdn by Molmil
Putative thioredoxin protein from Salmonella typhimurium
分子名称: CALCIUM ION, Putative thioredoxin protein
著者Osipiuk, J, Zhou, M, Kwon, K, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2011-01-18
公開日2011-02-09
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Putative thioredoxin protein from Salmonella typhimurium.
To be Published
5DG1
DownloadVisualize
BU of 5dg1 by Molmil
Sugar binding protein - human galectin-2
分子名称: Galectin-2, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Su, J.Y, Si, Y.L.
登録日2015-08-27
公開日2016-09-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Human galectin-2 interacts with carbohydrates and peptides non-classically: new insight from X-ray crystallography and hemagglutination.
Acta Biochim.Biophys.Sin., 2016
6CNX
DownloadVisualize
BU of 6cnx by Molmil
Crystal Structure of the Human vaccinia-related kinase 1 (VRK1) bound to an N-propynyl-N-isopentyl-dihydropteridin inhibitor
分子名称: (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-7-methyl-8-(3-methylbutyl)-5-(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one, (7S)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-7-methyl-8-(3-methylbutyl)-5-(prop-2-yn-1-yl)-7,8-dihydropteridin-6(5H)-one, ACETATE ION, ...
著者Counago, R.M, dos Reis, C.V, de Souza, G.P, Azevedo, A, Guimaraes, C, Mascarello, A, Gama, F, Ferreira, M, Massirer, K.B, Arruda, P, Edwards, A.M, Elkins, J.M, Structural Genomics Consortium (SGC)
登録日2018-03-09
公開日2018-04-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of the Human Vaccinia-Related Kinase 1 (VRK1) bound to a N-propynyl-N-isopentil-dihydropteridine inhibitor
To Be Published
5VVR
DownloadVisualize
BU of 5vvr by Molmil
Ternary complex of RNA Pol II, transcription scaffold and Rad26
分子名称: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ...
著者Lahiri, I, Leschziner, A.E.
登録日2017-05-19
公開日2017-11-22
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (5.8 Å)
主引用文献Structural basis for the initiation of eukaryotic transcription-coupled DNA repair.
Nature, 551, 2017
6CQA
DownloadVisualize
BU of 6cqa by Molmil
E. coli DHFR complex with inhibitor AMPQD
分子名称: 7-[(3-aminophenyl)methyl]-7H-pyrrolo[3,2-f]quinazoline-1,3-diamine, Dihydrofolate reductase, SULFATE ION
著者Cao, H, Rodrigues, J, Benach, J, Wasserman, S, Morisco, L, Koss, J, Shakhnovich, E, Skolnick, J.
登録日2018-03-14
公開日2019-01-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The crystal structure of a tetrahydrofolate-bound dihydrofolate reductase reveals the origin of slow product release.
Commun Biol, 1, 2018
3U47
DownloadVisualize
BU of 3u47 by Molmil
Human Carbonic Anhydrase II V143L
分子名称: Carbonic anhydrase 2, GLYCEROL, ZINC ION
著者West, D, Mckenna, R.
登録日2011-10-07
公開日2012-10-10
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural modification of the hydrophobic pocket of Human Carbonic Anhydrase II
To be Published
6CS0
DownloadVisualize
BU of 6cs0 by Molmil
SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, one S1 CTD in an upwards conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein,Fibritin, ...
著者Kirchdoerfer, R.N, Wang, N, Pallesen, J, Turner, H.L, Cottrell, C.A, McLellan, J.S, Ward, A.B.
登録日2018-03-19
公開日2018-04-11
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Stabilized coronavirus spikes are resistant to conformational changes induced by receptor recognition or proteolysis.
Sci Rep, 8, 2018

227344

件を2024-11-13に公開中

PDB statisticsPDBj update infoContact PDBjnumon