PDB: 47038 件ウェブページステータス検索Chemie searchBIRD

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7NAX	Complete Bacterial 30S ribosomal subunit assembly complex state I (Consensus Refinement) 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Lopez-Alonso, J, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S. 登録日 2021-01-25 公開日 2021-12-08 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv, 7, 2021
7NAR	Complete Bacterial 30S ribosomal subunit assembly complex state F (+RsgA)(Consensus Refinement) 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Schedlbauer, A, Iturrioz, I, Ochoa-Lizarralde, B, Diercks, T, Kaminishi, T, Capuni, R, Astigarraga, E, Gil-Carton, D, Fucini, P, Connell, S. 登録日 2021-01-25 公開日 2021-12-08 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Sci Adv, 7, 2021
3B6C	Crystal structure of the Streptomyces coelicolor TetR family protein ActR in complex with (S)-DNPA 分子名称: ActII protein, [(3S)-9-hydroxy-1-methyl-10-oxo-4,10-dihydro-3H-benzo[g]isochromen-3-yl]acetic acid 著者 Willems, A.R, Junop, M.S. 登録日 2007-10-28 公開日 2008-02-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of the Streptomyces coelicolor TetR-like protein ActR alone and in complex with actinorhodin or the actinorhodin biosynthetic precursor (S)-DNPA. J.Mol.Biol., 376, 2008
8K2D	Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A 分子名称: 18S rRNA, 23S rRNA, 40S ribosomal protein S1-A, ... 著者 Buschauer, R, Beckmann, R, Cheng, J. 登録日 2023-07-12 公開日 2024-07-10 最終更新日 2024-10-30 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline. Nat Commun, 15, 2024
3AFR	Crystal Structure of VDR-LBD/22S-Butyl-1a,24R-dihydroxyvitamin D3 complex 分子名称: (1R,3S,5Z)-5-[(2E)-2-{(1R,3aS,7aR)-1-[(1R,2S,4R)-2-butyl-4-hydroxy-1,5-dimethylhexyl]-7a-methyloctahydro-4H-inden-4-yli dene}ethylidene]-4-methylidenecyclohexane-1,3-diol, 13-meric peptide from Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor 著者 Inaba, Y, Nakabayashi, M, Itoh, T, Ikura, T, Ito, N, Yamamoto, K. 登録日 2010-03-10 公開日 2010-03-31 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 22S-Butyl-1alpha,24R-dihydroxyvitamin D(3): Recovery of vitamin D receptor agonistic activity J.Steroid Biochem.Mol.Biol., 121, 2010
3RZW	Crystal Structure of the Monobody ySMB-9 bound to human SUMO1 分子名称: GLYCEROL, Monobody ySMB-9, Small ubiquitin-related modifier 1 著者 Gilbreth, R.N, Koide, S. 登録日 2011-05-12 公開日 2011-12-28 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Teaching an old scaffold new tricks: monobodies constructed using alternative surfaces of the FN3 scaffold. J.Mol.Biol., 415, 2012
2ZXN	A New Class of Vitamin D Receptor Ligands that Induce Structural Rearrangement of the Ligand-binding Pocket 分子名称: (1R,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-1-[(2S,3S)-3-(2-hydroxyethyl)heptan-2-yl]-7a-methyl-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol, Mediator of RNA polymerase II transcription subunit 1, Vitamin D3 receptor 著者 Nakabayashi, M, Ikura, T, Ito, N. 登録日 2009-01-04 公開日 2009-02-17 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 A New Class of Vitamin D Analogues that Induce Structural Rearrangement of the Ligand-Binding Pocket of the Receptor J.Med.Chem., 52, 2009
6HRW	EthR2 in complex with compound 1 (BDM14272) 分子名称: (1~{S},5~{R})-8-[2-(4-chlorophenyl)ethyl]-8-azabicyclo[3.2.1]octan-3-one, Probable transcriptional regulatory protein 著者 Wintjens, R, Wohlkonig, A, Tanina, A. 登録日 2018-09-28 公開日 2019-02-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 A fragment-based approach towards the discovery of N-substituted tropinones as inhibitors of Mycobacterium tuberculosis transcriptional regulator EthR2. Eur J Med Chem, 167, 2019
6HS2	EthR2 in complex with compound 31 (BDM76150) 分子名称: (1~{S},5~{R})-8-[2-[4-(trifluoromethyl)phenyl]ethyl]-8-azabicyclo[3.2.1]octan-3-one, Probable transcriptional regulatory protein 著者 Wintjens, R, Wohlkonig, A, Tanina, A. 登録日 2018-09-28 公開日 2019-02-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.87 Å) 主引用文献 A fragment-based approach towards the discovery of N-substituted tropinones as inhibitors of Mycobacterium tuberculosis transcriptional regulator EthR2. Eur J Med Chem, 167, 2019
6BH8	Crystal structure of ZMPSTE24 in complex with phosphoramidon 分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, CAAX prenyl protease 1 homolog, N-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN, ... 著者 Goblirsch, B.R, Arachea, B.T, Wiener, M.C. 登録日 2017-10-30 公開日 2018-08-15 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3.85 Å) 主引用文献 Phosphoramidon inhibits the integral membrane protein zinc metalloprotease ZMPSTE24. Acta Crystallogr D Struct Biol, 74, 2018
4YZ6	Crystal Structure of Myc3[44-238] from Arabidopsis in complex with Jaz1 peptide [200-221] 分子名称: Protein TIFY 10A, Transcription factor MYC3 著者 Ke, J, Zhang, F, Brunzelle, J, Xu, H.E, Melcher, K, HE, S.Y. 登録日 2015-03-24 公開日 2015-08-05 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling. Nature, 525, 2015
3ADV	Human PPARgamma ligand-binding domain in complex with serotonin 分子名称: Peroxisome proliferator-activated receptor gamma, SEROTONIN 著者 Waku, T, Shiraki, T, Oyama, T, Morikawa, K. 登録日 2010-01-29 公開日 2010-12-22 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites Embo J., 29, 2010
4N4F	Crystal Structure of the Bromodomain-PHD Finger Module of Human Transcriptional Co-Activator CBP in complex with di-Acetylated Histone 4 Peptide (H412acK16ac). 分子名称: CREB-binding protein, Histone 4 Peptide, ZINC ION 著者 Plotnikov, A.N, Zhou, J, Zhou, M.-M. 登録日 2013-10-08 公開日 2014-02-19 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.83 Å) 主引用文献 Structural Insights into Acetylated-Histone H4 Recognition by the Bromodomain-PHD Finger Module of Human Transcriptional Coactivator CBP. Structure, 22, 2014
3I0R	crystal structure of HIV reverse transcriptase in complex with inhibitor 3 分子名称: Reverse transcriptase/ribonuclease H, S-{2-[(2-chloro-4-sulfamoylphenyl)amino]-2-oxoethyl} 6-methyl-3,4-dihydroquinoline-1(2H)-carbothioate, p51 RT 著者 Yan, Y, Prasad, S. 登録日 2009-06-25 公開日 2009-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Substituted tetrahydroquinolines as potent allosteric inhibitors of reverse transcriptase and its key mutants. Bioorg.Med.Chem.Lett., 19, 2009
3U5V	Crystal structure of Max-E47 分子名称: NITRATE ION, Protein max, Transcription factor E2-alpha chimera 著者 Guarne, A, Ahmadpour, F, Gloyd, M. 登録日 2011-10-11 公開日 2012-03-21 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of the minimalist max-e47 protein chimera. Plos One, 7, 2012
3KYC	Human SUMO E1 complex with a SUMO1-AMP mimic 分子名称: 5'-deoxy-5'-(sulfamoylamino)adenosine, SUMO-activating enzyme subunit 1, SUMO-activating enzyme subunit 2, ... 著者 Lima, C.D. 登録日 2009-12-05 公開日 2010-02-16 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Active site remodelling accompanies thioester bond formation in the SUMO E1. Nature, 463, 2010
7OE0	E. coli pre-30S delta rbfA ribosomal subunit class F 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Maksimova, E, Korepanov, A, Baymukhametov, T, Kravchenko, O, Stolboushkina, E. 登録日 2021-04-30 公開日 2021-07-14 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.69 Å) 主引用文献 RbfA Is Involved in Two Important Stages of 30S Subunit Assembly: Formation of the Central Pseudoknot and Docking of Helix 44 to the Decoding Center. Int J Mol Sci, 22, 2021
7OE1	30S ribosomal subunit from E. coli 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Maksimova, E, Korepanov, A, Baymukhametov, T, Kravchenko, O, Stolboushkina, E. 登録日 2021-04-30 公開日 2021-07-14 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 RbfA Is Involved in Two Important Stages of 30S Subunit Assembly: Formation of the Central Pseudoknot and Docking of Helix 44 to the Decoding Center. Int J Mol Sci, 22, 2021
2YO3	Salmonella enterica SadA 1185-1386 fused to GCN4 adaptors (SadAK14) 分子名称: CHLORIDE ION, GENERAL CONTROL PROTEIN GCN4, PUTATIVE INNER MEMBRANE PROTEIN 著者 Hartmann, M.D, Hernandez Alvarez, B, Lupas, A.N. 登録日 2012-10-20 公開日 2012-12-12 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Complete Fiber Structures of Complex Trimeric Autotransporter Adhesins Conserved in Enterobacteria. Proc.Natl.Acad.Sci.USA, 109, 2012
2VBY	Feast or famine regulatory protein (Rv3291c)from M. tuberculosis complexed with L-Tyrosine 分子名称: TRANSCRIPTIONAL REGULATORY PROTEIN, TYROSINE 著者 Shrivastava, T, Ramachandran, R. 登録日 2007-09-18 公開日 2007-11-06 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Mechanistic Insights from the Crystal Structures of a Feast/Famine Regulatory Protein from Mycobacterium Tuberculosis H37Rv. Nucleic Acids Res., 35, 2007
3C2B	Crystal structure of TetR transcriptional regulator from Agrobacterium tumefaciens 分子名称: FORMIC ACID, Transcriptional regulator, TetR family 著者 Osipiuk, J, Skarina, T, Zheng, H, Savchenko, A, Edwards, A.M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2008-01-24 公開日 2008-02-05 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 X-ray crystal structure of TetR transcriptional regulator from Agrobacterium tumefaciens. To be Published
2VC1	Feast or famine regulatory protein (Rv3291c)from M. tuberculosis complexed with L-Methionine 分子名称: METHIONINE, TRANSCRIPTIONAL REGULATORY PROTEIN 著者 Shrivastava, T, Ramachandran, R. 登録日 2007-09-18 公開日 2007-11-06 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Mechanistic Insights from the Crystal Structures of a Feast/Famine Regulatory Protein from Mycobacterium Tuberculosis H37Rv. Nucleic Acids Res., 35, 2007
2ZK0	Human peroxisome proliferator-activated receptor gamma ligand binding domain 分子名称: Peroxisome proliferator-activated receptor gamma 著者 Waku, T, Shiraki, T, Oyama, T, Fujimoto, Y, Morikawa, K. 登録日 2008-03-12 公開日 2009-02-24 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids J.Mol.Biol., 385, 2009
3KYD	Human SUMO E1~SUMO1-AMP tetrahedral intermediate mimic 分子名称: 1,2-ETHANEDIOL, 5'-{[(3-aminopropyl)sulfonyl]amino}-5'-deoxyadenosine, SUMO-activating enzyme subunit 1, ... 著者 Lima, C.D. 登録日 2009-12-05 公開日 2010-02-16 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.61 Å) 主引用文献 Active site remodelling accompanies thioester bond formation in the SUMO E1. Nature, 463, 2010
1WNE	Foot and Mouth Disease Virus RNA-dependent RNA polymerase in complex with a template-primer RNA 分子名称: 5'-R(*CP*AP*UP*GP*GP*GP*CP*C)-3', 5'-R(*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ... 著者 Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N. 登録日 2004-07-31 公開日 2004-08-31 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of Foot-and-Mouth Disease Virus RNA-dependent RNA Polymerase and Its Complex with a Template-Primer RNA J.Biol.Chem., 279, 2004

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