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PDB: 100 件
7F5I
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X-ray structure of Clostridium perfringens-specific amidase endolysin
分子名称: GLUTAMIC ACID, SODIUM ION, ZINC ION, ...
著者Kamitori, S, Tamai, E.
登録日2021-06-22
公開日2022-05-04
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural and biochemical characterization of the Clostridium perfringens-specific Zn 2+ -dependent amidase endolysin, Psa, catalytic domain.
Biochem.Biophys.Res.Commun., 576, 2021
5XGY
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Crystal structure of peptidoglycan recognition protein (PGRP-S) at 2.45 A resolution
分子名称: GLYCEROL, L(+)-TARTARIC ACID, Peptidoglycan recognition protein 1
著者Shokeen, A, Sharma, P, Singh, P.K, Kaur, P, Sharma, S, Singh, T.P.
登録日2017-04-18
公開日2017-05-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal structure of peptidoglycan recognition protein (PGRP-S) at 2.45 A resolution
To Be Published
3TRU
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BU of 3tru by Molmil
Crystal structure of the complex of peptidoglycan recognition protein with cellular metabolite chorismate at 3.2 A resolution
分子名称: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, GLYCEROL, L(+)-TARTARIC ACID, ...
著者Dube, D, Sharma, P, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2011-09-10
公開日2011-09-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of the complex of peptidoglycan recognition protein with cellular metabolite chorismate at 3.2 A resolution
To be Published
6IDM
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BU of 6idm by Molmil
Crystal structure of Peptidoglycan recognition protein (PGRP-S) with Tartaric acid at 3.20 A resolution
分子名称: L(+)-TARTARIC ACID, Peptidoglycan recognition protein 1
著者Bairagya, H.R, Shokeen, A, Sharma, P, Singh, P.K, Sharma, S, Singh, T.P.
登録日2018-09-10
公開日2018-09-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of Peptidoglycan recognition protein (PGRP-S) with Tartaric acid at 3.20 A resolution
To Be Published
2R2K
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BU of 2r2k by Molmil
Crystal structure of the complex of camel peptidoglycan recognition protein with disaccharide at 3.2A resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, L(+)-TARTARIC ACID, Peptidoglycan recognition protein
著者Sharma, P, Jain, R, Singh, N, Sharma, S, Bhushan, A, Kaur, P, Singh, T.P.
登録日2007-08-26
公開日2007-09-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.25 Å)
主引用文献Crystal structure of the complex of camel peptidoglycan recognition protein with disaccharide at 3.2A resolution
To be Published
1OHT
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Peptidoglycan recognition protein LB
分子名称: 1,2-ETHANEDIOL, CG14704 PROTEIN, L(+)-TARTARIC ACID, ...
著者Kim, M.-S, Byun, M, Oh, B.-H.
登録日2003-05-31
公開日2003-07-18
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Peptidoglycan Recognition Protein Lb from Drosophila Melanogaster
Nat.Immunol., 4, 2003
6FHG
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Crystal structure of the Ts2631 endolysin from Thermus scotoductus phage with the unique N-terminal moiety responsible for peptidoglycan anchoring
分子名称: LysT endolysin, ZINC ION
著者Zeth, K, Sancho-Vaello, E, Plotka, M.
登録日2018-01-14
公開日2019-01-30
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan binding.
Sci Rep, 9, 2019
6CKH
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Manduca sexta Peptidoglycan Recognition Protein-1
分子名称: Peptidoglycan-recognition protein
著者Hu, Y.
登録日2018-02-28
公開日2019-06-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The three-dimensional structure and recognition mechanism of Manduca sexta peptidoglycan recognition protein-1.
Insect Biochem.Mol.Biol., 108, 2019
8C4D
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N-acetylmuramoyl-L-alanine amidase from Enterococcus faecium prophage genome
分子名称: CHLORIDE ION, CITRATE ANION, N-acetylmuramoyl-L-alanine amidase, ...
著者Papageorgiou, A.C, Premetis, G.E, Labrou, N.E.
登録日2023-01-03
公開日2023-12-13
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structural and functional features of a broad-spectrum prophage-encoded enzybiotic from Enterococcus faecium.
Sci Rep, 13, 2023
3HMB
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Mutant endolysin from Bacillus subtilis
分子名称: N-acetylmuramoyl-L-alanine amidase xlyA, ZINC ION
著者Low, L.Y, Liddington, R.
登録日2009-05-29
公開日2010-06-09
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Role of net charge on catalytic domain and influence of cell wall binding domain on bactericidal activity, specificity, and host range of phage lysins.
J.Biol.Chem., 286, 2011
2L47
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Solution structure of the PlyG catalytic domain
分子名称: N-acetylmuramoyl-L-alanine amidase, ZINC ION
著者Volkman, B.F, Dias, J.S, Peterson, F.C.
登録日2010-10-01
公開日2011-10-12
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Tbd
To be Published
5XZ4
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The X-tay structure of Bumblebee PGRP-SA
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bumblebee peptidoglycan recognition protein SA, SULFATE ION
著者Liu, Y.J, Huang, J.X, Zhao, X.M, An, J.D.
登録日2017-07-11
公開日2018-09-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Structural Insights into the Preferential Binding of PGRP-SAs from Bumblebees and Honeybees to Dap-Type Peptidoglycans Rather than Lys-Type Peptidoglycans.
J Immunol., 202, 2019
4GF9
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BU of 4gf9 by Molmil
Structural insights into the dual strategy of recognition of peptidoglycan recognition protein, PGRP-S: ternary complex of PGRP-S with LPS and fatty acid
分子名称: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, GLYCEROL, Peptidoglycan recognition protein 1, ...
著者Sharma, P, Dube, D, Sinha, M, Yadav, S, Kaur, P, Sharma, S, Singh, T.P.
登録日2012-08-03
公開日2012-09-26
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural insights into the dual strategy of recognition by peptidoglycan recognition protein, PGRP-S: structure of the ternary complex of PGRP-S with lipopolysaccharide and stearic acid.
Plos One, 8, 2013
4Z8I
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Crystal structure of Branchiostoma belcheri tsingtauense peptidoglycan recognition protein 3
分子名称: ZINC ION, peptidoglycan recognition protein 3
著者Wang, W.J, Cheng, W, Jiang, Y.L, Luo, M, Cao, D.D, Chi, C.B, Yang, H.B, Chen, Y, Zhou, C.Z.
登録日2015-04-09
公開日2015-10-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.701 Å)
主引用文献Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BbtPGRP3 via Fusion with a Chitin Binding Domain
Plos One, 10, 2015
4ZXM
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Crystal structure of PGRP domain from Branchiostoma belcheri tsingtauense peptidoglycan recognition protein 3
分子名称: PGRP domain of peptidoglycan recognition protein 3
著者Wang, W.J, Cheng, W, Jiang, Y.L, Yu, H.M, Luo, M.
登録日2015-05-20
公開日2015-10-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Activity Augmentation of Amphioxus Peptidoglycan Recognition Protein BbtPGRP3 via Fusion with a Chitin Binding Domain
Plos One, 10, 2015
7DY5
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Structure of the ternary complex of peptidoglycan recognition protein-short (PGRP-S) with hexanoic acid and tartaric acid at 2.30A resolution
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, GLYCEROL, ...
著者Maurya, A, Viswanathan, V, Sharma, P, Sharma, S, Singh, T.P.
登録日2021-01-20
公開日2021-02-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the ternary complex of peptidoglycan recognition protein-short (PGRP-S)
To Be Published
6A89
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Crystal structure of the ternary complex of peptidoglycan recognition protein (PGRP-S) with Tartaric acid, Ribose and 2,6-DIAMINOPIMELIC ACID at 2.11 A resolution
分子名称: 1,2-ETHANEDIOL, 2,6-DIAMINOPIMELIC ACID, GLYCEROL, ...
著者Bairagya, H.R, Shokeen, A, Sharma, P, Singh, P.K, Sharma, S, Singh, T.P.
登録日2018-07-06
公開日2018-07-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Crystal structure of the ternary complex of peptidoglycan recognition protein (PGRP-S) with Tartaric acid, Ribose and 2,6-DIAMINOPIMELIC ACID at 2.11 A resolution
To Be Published
4FNN
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BU of 4fnn by Molmil
Crystal structure of the complex of CPGRP-S with stearic acid at 2.2 A RESOLUTION
分子名称: Peptidoglycan recognition protein 1, STEARIC ACID
著者Dube, D, Sharma, P, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2012-06-20
公開日2012-07-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Structural basis of the binding of fatty acids to peptidoglycan recognition protein, PGRP-S through second binding site.
Arch.Biochem.Biophys., 529, 2013
1J3G
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Solution structure of Citrobacter Freundii AmpD
分子名称: AmpD protein, ZINC ION
著者Liepinsh, E, Genereux, C, Dehareng, D, Joris, B, Otting, G.
登録日2003-01-31
公開日2003-02-18
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献NMR Structure of Citrobacter freundii AmpD, Comparison with Bacteriophage T7 Lysozyme and Homology with PGRP Domains
J.Mol.Biol., 327, 2003
1LBA
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BU of 1lba by Molmil
THE STRUCTURE OF BACTERIOPHAGE T7 LYSOZYME, A ZINC AMIDASE AND AN INHIBITOR OF T7 RNA POLYMERASE
分子名称: T7 LYSOZYME, ZINC ION
著者Cheng, X.
登録日1993-12-22
公開日1994-04-30
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The structure of bacteriophage T7 lysozyme, a zinc amidase and an inhibitor of T7 RNA polymerase.
Proc.Natl.Acad.Sci.USA, 91, 1994
2RKQ
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Crystal structure of drosophila peptidoglycan recognition protein SD (PGRP-SD)
分子名称: Peptidoglycan-recognition protein-SD
著者Roussel, A, Royet, J, Leone, P, Kellenberger, C.
登録日2007-10-17
公開日2008-03-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of Drosophila PGRP-SD suggests binding to DAP-type but not lysine-type peptidoglycan
Mol.Immunol., 45, 2008
2R90
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Crystal structure of cameline peptidoglycan recognition protein at 2.8A resolution
分子名称: Peptidoglycan recognition protein
著者Sharma, P, Singh, N, Sinha, M, Sharma, S, Kaur, P, Srinivasan, A, Singh, T.P.
登録日2007-09-12
公開日2007-09-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of cameline peptidoglycan recognition protein at 2.8A resolution
To be Published
6SRT
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BU of 6srt by Molmil
Endolysine N-acetylmuramoyl-L-alanine amidase LysCS from Clostridium intestinale URNW
分子名称: GLYCEROL, N-acetylmuramoyl-L-alanine amidase, PHOSPHATE ION, ...
著者Hakansson, M, Al-Karadaghi, S, Plotka, M, Kaczorowska, A.-K, Kaczorowski, T.
登録日2019-09-06
公開日2020-09-30
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.21 Å)
主引用文献Structure and function of endolysines LysCS, LysC from Clostridium intestinale
To Be Published
6SU5
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Ph2119 endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119
分子名称: GLYCEROL, Lysozyme, PHOSPHATE ION, ...
著者Hakansson, M, Al-Karadaghi, S, Plotka, M, Kaczorowska, A.K, Kaczorowski, T.
登録日2019-09-13
公開日2020-09-30
最終更新日2021-04-14
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Molecular Characterization of a Novel Lytic Enzyme LysC from Clostridium intestinale URNW and Its Antibacterial Activity Mediated by Positively Charged N -Terminal Extension.
Int J Mol Sci, 21, 2020
1Z6I
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Crystal structure of the ectodomain of Drosophila transmembrane receptor PGRP-LCa
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Peptidoglycan-recognition protein-LC, SULFATE ION
著者Chang, C.-I, Ihara, K, Chelliah, Y, Mengin-Lecreulx, D, Wakatsuki, S, Deisenhofer, J.
登録日2005-03-22
公開日2005-07-19
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of the ectodomain of Drosophila peptidoglycan-recognition protein LCa suggests a molecular mechanism for pattern recognition
Proc.Natl.Acad.Sci.Usa, 102, 2005

 

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