8W6X
| Neutron structure of [NiFe]-hydrogenase from D. vulgaris Miyazaki F in its oxidized state | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, FE3-S4 CLUSTER, ... | 著者 | Hiromoto, T, Tamada, T. | 登録日 | 2023-08-30 | 公開日 | 2023-09-13 | 最終更新日 | 2023-11-15 | 実験手法 | NEUTRON DIFFRACTION (1.04 Å), X-RAY DIFFRACTION | 主引用文献 | New insights into the oxidation process from neutron and X-ray crystal structures of an O 2 -sensitive [NiFe]-hydrogenase. Chem Sci, 14, 2023
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3CUS
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6EHS
| E. coli Hydrogenase-2 chemically reduced structure | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, DITHIONITE, FE3-S4 CLUSTER, ... | 著者 | Carr, S.B, Evans, R.M, Beaton, S.E, Armstrong, F.A. | 登録日 | 2017-09-15 | 公開日 | 2018-04-18 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | The structure of hydrogenase-2 fromEscherichia coli: implications for H2-driven proton pumping. Biochem. J., 475, 2018
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6RTP
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8DQV
| The 1.52 angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L) | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ... | 著者 | Grinter, R, Venugopal, H, Kropp, A, Greening, C. | 登録日 | 2022-07-20 | 公開日 | 2023-01-04 | 最終更新日 | 2023-03-29 | 実験手法 | ELECTRON MICROSCOPY (1.52 Å) | 主引用文献 | Structural basis for bacterial energy extraction from atmospheric hydrogen. Nature, 615, 2023
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2WPN
| Structure of the oxidised, as-isolated NiFeSe hydrogenase from D. vulgaris Hildenborough | 分子名称: | 3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE, BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II), CARBONMONOXIDE-(DICYANO) IRON, ... | 著者 | Marques, M.C, Coelho, R, De Lacey, A.L, Pereira, I.A.C, Matias, P.M. | 登録日 | 2009-08-07 | 公開日 | 2010-01-12 | 最終更新日 | 2019-07-10 | 実験手法 | X-RAY DIFFRACTION (2.04 Å) | 主引用文献 | The three-dimensional structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough: a hydrogenase without a bridging ligand in the active site in its oxidised, "as-isolated" state. J.Mol.Biol., 396, 2010
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3H3X
| Structure of the V74M large subunit mutant of NI-FE hydrogenase in an oxidized state | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... | 著者 | Volbeda, A, Martinez, N, Martin, L, Fontecilla-Camps, J.C. | 登録日 | 2009-04-17 | 公開日 | 2009-07-21 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | 主引用文献 | Introduction of methionines in the gas channel makes [NiFe] hydrogenase aero-tolerant J.Am.Chem.Soc., 131, 2009
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3MYR
| Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state | 分子名称: | CHLORIDE ION, FE3-S4 CLUSTER, Hydrogenase (NiFe) small subunit HydA, ... | 著者 | Ogata, H, Kellers, P, Lubitz, W. | 登録日 | 2010-05-11 | 公開日 | 2010-08-04 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The crystal structure of the [NiFe] hydrogenase from the photosynthetic bacterium Allochromatium vinosum: characterization of the oxidized enzyme (Ni-A state). J.Mol.Biol., 402, 2010
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4OMF
| The F420-reducing [NiFe]-hydrogenase complex from Methanothermobacter marburgensis, the first X-ray structure of a group 3 family member | 分子名称: | CHLORIDE ION, F420-reducing hydrogenase, subunit alpha, ... | 著者 | Vitt, S, Ma, K, Warkentin, E, Moll, J, Pierik, A, Shima, S, Ermler, U. | 登録日 | 2014-01-27 | 公開日 | 2014-06-11 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (1.71 Å) | 主引用文献 | The F420-Reducing [NiFe]-Hydrogenase Complex from Methanothermobacter marburgensis, the First X-ray Structure of a Group 3 Family Member. J.Mol.Biol., 426, 2014
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2FRV
| CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF NI-FE HYDROGENASE | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... | 著者 | Volbeda, A, Frey, M, Fontecilla-Camps, J.C. | 登録日 | 1997-06-10 | 公開日 | 1998-06-17 | 最終更新日 | 2023-08-09 | 実験手法 | X-RAY DIFFRACTION (2.54 Å) | 主引用文献 | Structure of the [Nife] Hydrogenase Active Site: Evidence for Biologically Uncommon Fe Ligands J.Am.Chem.Soc., 118, 1996
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4UQP
| High-resolution structure of the D. fructosovorans NiFe-hydrogenase L122A mutant after exposure to air | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... | 著者 | Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. | 登録日 | 2014-06-24 | 公開日 | 2014-10-29 | 最終更新日 | 2023-03-15 | 実験手法 | X-RAY DIFFRACTION (1.42 Å) | 主引用文献 | Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures for the Elusive Unready Oxidized States. J.Biol.Inorg.Chem., 20, 2015
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4UQL
| High-resolution structure of a Ni-A Ni-Sox mixture of the D. fructosovorans NiFe-hydrogenase L122A mutant | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... | 著者 | Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. | 登録日 | 2014-06-24 | 公開日 | 2014-10-29 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.22 Å) | 主引用文献 | Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures for the Elusive Unready Oxidized States. J.Biol.Inorg.Chem., 20, 2015
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1CC1
| CRYSTAL STRUCTURE OF A REDUCED, ACTIVE FORM OF THE NI-FE-SE HYDROGENASE FROM DESULFOMICROBIUM BACULATUM | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, HYDROGENASE (LARGE SUBUNIT), ... | 著者 | Garcin, E, Vernede, X, Hatchikian, E.C, Volbeda, A, Frey, M, Fontecilla-Camps, J.C. | 登録日 | 1999-03-03 | 公開日 | 1999-06-01 | 最終更新日 | 2023-08-09 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center Structure Fold.Des., 7, 1999
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1E3D
| [NiFe] Hydrogenase from Desulfovibrio desulfuricans ATCC 27774 | 分子名称: | (MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS,S)NICKEL(II)](FE-NI), BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II), FE3-S4 CLUSTER, ... | 著者 | Matias, P.M, Soares, C.M, Saraiva, L.M, Coelho, R, Morais, J, Le Gall, J, Carrondo, M.A. | 登録日 | 2000-06-14 | 公開日 | 2001-06-14 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | [Nife] Hydrogenase from Desulfovibrio Desulfuricans Atcc 27774: Gene Sequencing, Three-Dimensional Structure Determination and Refinement at 1.8 A and Modelling Studies of its Interaction with the Tetrahaem Cytochrome C3. J.Biol.Inorg.Chem., 6, 2001
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5ADU
| The Mechanism of Hydrogen Activation by NiFe-hydrogenases | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, ... | 著者 | Evans, R, Brooke, E.J, Wehlin, S.A, Nomerotskaia, E, Sargent, F, Carr, S.B, Phillips, S.E.V, Armstrong, F.A. | 登録日 | 2015-08-24 | 公開日 | 2015-11-25 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (1.1 Å) | 主引用文献 | Mechanism of hydrogen activation by [NiFe] hydrogenases. Nat. Chem. Biol., 12, 2016
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7VXQ
| The Carbon Monoxide Complex of [NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 | 分子名称: | CARBON MONOXIDE, FE3-S4 CLUSTER, GLYCEROL, ... | 著者 | Nishikawa, K, Higuchi, K, Imanishi, T, Higuchi, Y. | 登録日 | 2021-11-13 | 公開日 | 2022-02-09 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.77 Å) | 主引用文献 | Structural and spectroscopic characterization of CO inhibition of [NiFe]-hydrogenase from Citrobacter sp. S-77. Acta Crystallogr.,Sect.F, 78, 2022
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5AA5
| Actinobacterial-type NiFe-hydrogenase from Ralstonia eutropha H16 at 2.85 Angstrom resolution | 分子名称: | IRON/SULFUR CLUSTER, MALONIC ACID, NIFE-HYDROGENASE LARGE SUBUNIT, ... | 著者 | Schaefer, C, Bommer, M, Hennig, S, Jeoung, J.H, Dobbek, H, Lenz, O. | 登録日 | 2015-07-23 | 公開日 | 2016-01-20 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (2.497 Å) | 主引用文献 | Structure of an Actinobacterial-Type [Nife]-Hydrogenase Reveals Insight Into O2-Tolerant H2 Oxidation. Structure, 24, 2016
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5A4F
| The mechanism of Hydrogen Activation by NiFe-hydrogenases. | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... | 著者 | Evans, R.M, Brooke, E.J, Wehlin, S.A.M, Nomerotskaia, E, Sargent, F, Carr, S.B, Phillips, S.E.V, Armstrong, F.A. | 登録日 | 2015-06-09 | 公開日 | 2015-11-25 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Mechanism of hydrogen activation by [NiFe] hydrogenases. Nat. Chem. Biol., 12, 2016
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7NEM
| Hydrogenase-2 variant R479K - anaerobically oxidised form | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... | 著者 | Carr, S.B. | 登録日 | 2021-02-04 | 公開日 | 2022-03-02 | 最終更新日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (1.35 Å) | 主引用文献 | A comprehensive structural and kinetic investigation of the role of the active-site argininein bidirectional hydrogen activation by the [NiFe]-hydrogenase "Hyd-2) from Escherichia coli To Be Published
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5A4I
| The mechanism of Hydrogen activation by NiFE-hydrogenases | 分子名称: | CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, ... | 著者 | Evans, R.M, Brooke, E.J, Wehlin, S.A.M, Nomerotskaia, E, Sargent, F, Carr, S.C, Phillips, S.E.V, Armstrong, F.A. | 登録日 | 2015-06-10 | 公開日 | 2015-11-25 | 最終更新日 | 2024-01-10 | 実験手法 | X-RAY DIFFRACTION (1.23 Å) | 主引用文献 | Mechanism of hydrogen activation by [NiFe] hydrogenases. Nat. Chem. Biol., 12, 2016
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4CI0
| Electron cryo-microscopy of F420-reducing NiFe hydrogenase Frh | 分子名称: | F420-REDUCING HYDROGENASE, SUBUNIT ALPHA, SUBUNIT BETA, ... | 著者 | Allegretti, M, Mills, D.J, McMullan, G, Kuehlbrandt, W, Vonck, J. | 登録日 | 2013-12-05 | 公開日 | 2014-02-26 | 最終更新日 | 2019-11-20 | 実験手法 | ELECTRON MICROSCOPY (3.36 Å) | 主引用文献 | Atomic Model of the F420-Reducing [Nife] Hydrogenase by Electron Cryo-Electron Microscopy Using a Direct Electron Detector. Elife, 3, 2014
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3AYX
| Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an H2-reduced condition | 分子名称: | CARBON MONOXIDE, CYANIDE ION, FE (II) ION, ... | 著者 | Shomura, Y, Yoon, K.S, Nishihara, H, Higuchi, Y. | 登録日 | 2011-05-20 | 公開日 | 2011-10-12 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.18 Å) | 主引用文献 | Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase Nature, 479, 2011
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8POW
| Crystal Structure of the C19G variant of the membrane-bound [NiFe]-Hydrogenase from Cupriavidus necator in the air-oxidized state at 1.61 A Resolution. | 分子名称: | CHLORIDE ION, FE3-S4 CLUSTER, Fe4S4, ... | 著者 | Kalms, J, Schmidt, A, Scheerer, P. | 登録日 | 2023-07-05 | 公開日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.61 Å) | 主引用文献 | Stepwise conversion of the Cys 6 [4Fe-3S] to a Cys 4 [4Fe-4S] cluster and its impact on the oxygen tolerance of [NiFe]-hydrogenase. Chem Sci, 14, 2023
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7ODG
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3AYZ
| Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an air-oxidized condition | 分子名称: | CARBON MONOXIDE, CYANIDE ION, FE (II) ION, ... | 著者 | Shomura, Y, Yoon, K.S, Nishihara, H, Higuchi, Y. | 登録日 | 2011-05-20 | 公開日 | 2011-10-12 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.22 Å) | 主引用文献 | Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase Nature, 479, 2011
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