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PDB: 22 件

4Q5E
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Shigella Effector Kinase OspG bound to E2-Ub UbcH7-Ub Conjugate
分子名称: Polyubiquitin, Protein kinase OspG, Ubiquitin-conjugating enzyme E2 L3
著者Cygler, M, Grishin, A.M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
登録日2014-04-16
公開日2014-07-02
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.869 Å)
主引用文献Structural Basis for the Inhibition of Host Protein Ubiquitination by Shigella Effector Kinase OspG.
Structure, 22, 2014
4Q5H
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BU of 4q5h by Molmil
Shigella Effector Kinase OspG bound to AMPPNP and E2-Ub UbcH7-Ub Conjugate
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Polyubiquitin, ...
著者Cygler, M, Grishin, A.M, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
登録日2014-04-16
公開日2014-07-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.999 Å)
主引用文献Structural Basis for the Inhibition of Host Protein Ubiquitination by Shigella Effector Kinase OspG.
Structure, 22, 2014
4NNJ
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BU of 4nnj by Molmil
Crystal structure of Uba1 in complex with ubiquitin-AMP and thioesterified ubiquitin
分子名称: ADENOSINE MONOPHOSPHATE, GLYCEROL, SULFATE ION, ...
著者Schaefer, A, Schindelin, H.
登録日2013-11-18
公開日2014-05-07
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the ubiquitin-activating enzyme loaded with two ubiquitin molecules.
Acta Crystallogr.,Sect.D, 70, 2014
3OLM
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BU of 3olm by Molmil
Structure and Function of a Ubiquitin Binding Site within the Catalytic Domain of a HECT Ubiquitin Ligase
分子名称: E3 ubiquitin-protein ligase RSP5, Ubiquitin
著者Kim, H.C, Steffen, A, Chen, J, Huibregtse, J.M.
登録日2010-08-26
公開日2011-03-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.495 Å)
主引用文献Structure and function of a HECT domain ubiquitin-binding site.
Embo Rep., 12, 2011
4HCN
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BU of 4hcn by Molmil
Crystal structure of Burkholderia pseudomallei effector protein CHBP in complex with ubiquitin
分子名称: DI(HYDROXYETHYL)ETHER, FORMIC ACID, PHOSPHATE ION, ...
著者Yao, Q, Cui, J, Zhu, Y, Shao, F.
登録日2012-09-30
公開日2012-11-21
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural mechanism of ubiquitin and NEDD8 deamidation catalyzed by bacterial effectors that induce macrophage-specific apoptosis.
Proc.Natl.Acad.Sci.USA, 109, 2012
3CMM
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BU of 3cmm by Molmil
Crystal Structure of the Uba1-Ubiquitin Complex
分子名称: PROLINE, Ubiquitin, Ubiquitin-activating enzyme E1 1
著者Lee, I, Schindelin, H.
登録日2008-03-23
公開日2008-08-05
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural insights into E1-catalyzed ubiquitin activation and transfer to conjugating enzymes.
Cell(Cambridge,Mass.), 134, 2008
3L0W
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BU of 3l0w by Molmil
Structure of split monoubiquitinated PCNA with ubiquitin in position two
分子名称: Monoubiquitinated Proliferating cell nuclear antigen, Proliferating cell nuclear antigen
著者Freudenthal, B.D, Gakhar, L, Ramaswamy, S, Washington, M.T.
登録日2009-12-10
公開日2010-03-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange.
Nat.Struct.Mol.Biol., 17, 2010
3L10
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BU of 3l10 by Molmil
Structure of split monoubiquitinated PCNA with ubiquitin in position one
分子名称: Monoubiquitinated Proliferating cell nuclear antigen, Proliferating cell nuclear antigen
著者Freudenthal, B.D, Gakhar, L, Ramaswamy, S, Washington, M.T.
登録日2009-12-10
公開日2010-03-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of monoubiquitinated PCNA and implications for translesion synthesis and DNA polymerase exchange.
Nat.Struct.Mol.Biol., 17, 2010
8DAV
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BU of 8dav by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uC)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAW
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BU of 8daw by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uD)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAU
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BU of 8dau by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two folded ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (uA)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
8DAT
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BU of 8dat by Molmil
Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intB)
分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ...
著者Lee, H.G, Lima, C.D.
登録日2022-06-14
公開日2022-11-30
最終更新日2023-01-11
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex.
Proc.Natl.Acad.Sci.USA, 120, 2023
1ZGU
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BU of 1zgu by Molmil
Solution structure of the human Mms2-Ubiquitin complex
分子名称: Ubiquitin, Ubiquitin-conjugating enzyme E2 variant 2
著者Lewis, M.J, Saltibus, L.F, Hau, D.D, Xiao, W, Spyracopoulos, L.
登録日2005-04-22
公開日2006-04-04
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural Basis for Non-Covalent Interaction Between Ubiquitin and the Ubiquitin Conjugating Enzyme Variant Human MMS2.
J.Biomol.Nmr, 34, 2006
1OTR
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BU of 1otr by Molmil
Solution Structure of a CUE-Ubiquitin Complex
分子名称: Ubiquitin, protein Cue2
著者Kang, R.S, Daniels, C.M, Salerno, W.J, Radhakrishnan, I.
登録日2003-03-22
公開日2003-06-24
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure of a CUE-Ubiquitin Complex Reveals a Conserved Mode of Ubiquitin Binding
Cell(Cambridge,Mass.), 113, 2003
1WR1
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BU of 1wr1 by Molmil
The complex structure of Dsk2p UBA with ubiquitin
分子名称: Ubiquitin, Ubiquitin-like protein DSK2
著者Ohno, A, Jee, J.G, Fujiwara, K, Tenno, T, Goda, N, Tochio, H, Hiroaki, H, kobayashi, H, Shirakawa, M.
登録日2004-10-08
公開日2005-04-19
最終更新日2023-09-27
実験手法SOLUTION NMR
主引用文献Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition.
Structure, 13, 2005
1ZW7
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BU of 1zw7 by Molmil
Elimination of the C-cap in Ubiquitin Structure, Dynamics and Thermodynamic Consequences
分子名称: Ubiquitin
著者Ermolenko, D.N, Dangi, B, Gronenborn, A.M, Makhatadze, G.I.
登録日2005-06-03
公開日2006-05-16
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Elimination of the C-cap in ubiquitin-structure, dynamics and thermodynamic consequences.
Biophys.Chem., 126, 2007
2JT4
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BU of 2jt4 by Molmil
Solution Structure of the Sla1 SH3-3-Ubiquitin Complex
分子名称: Cytoskeleton assembly control protein SLA1, Ubiquitin
著者He, Y, Radhakrishnan, I.
登録日2007-07-18
公開日2007-09-25
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Basis for Ubiquitin Recognition by SH3 Domains
J.Mol.Biol., 373, 2007
2G3Q
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BU of 2g3q by Molmil
Solution Structure of Ede1 UBA-ubiquitin complex
分子名称: Protein YBL047C, Ubiquitin
著者Swanson, K.A, Hicke, L, Radhakrishnan, I.
登録日2006-02-20
公開日2006-05-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural Basis for Monoubiquitin Recognition by the Ede1 UBA Domain.
J.Mol.Biol., 358, 2006
2JWZ
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BU of 2jwz by Molmil
Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins
分子名称: Ubiquitin
著者Haririnia, A, Verma, R, Purohit, N, Twarog, M, Deshaies, R, Bolon, D, Fushman, D.
登録日2007-10-31
公開日2008-01-08
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins.
J.Mol.Biol., 375, 2008
2L00
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BU of 2l00 by Molmil
Solution structure of the non-covalent complex of the ZNF216 A20 domain with ubiquitin
分子名称: Ubiquitin, ZINC ION, Zfand5 protein (Zinc finger protein 216 (Predicted), ...
著者Garner, T.P, Long, J.E, Searle, M.S, Layfield, R.
登録日2010-06-29
公開日2011-07-20
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Co-localisation of ubiquitin receptors ZNF216 and p62 in a ubiquitin-mediated ternary complex
To be Published
1Q0W
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BU of 1q0w by Molmil
Solution structure of Vps27 amino-terminal UIM-ubiquitin complex
分子名称: Ubiquitin, Vacuolar protein sorting-associated protein VPS27
著者Swanson, K.A, Kang, R.S, Stamenova, S.D, Hicke, L, Radhakrishnan, I.
登録日2003-07-17
公開日2003-10-07
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution Structure of Vps27 UIM-Ubiquitin Complex Important for Endosomal Sorting and Receptor Downregulation
Embo J., 22, 2003
2KDI
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BU of 2kdi by Molmil
Solution structure of a Ubiquitin/UIM fusion protein
分子名称: Ubiquitin, Vacuolar protein sorting-associated protein 27 fusion protein
著者Sgourakis, N.G, Patel, M.M, Garcia, A.E, Makhatadze, G.I, McCallum, S.A.
登録日2009-01-09
公開日2010-02-09
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献Conformational Dynamics and Structural Plasticity Play Critical Roles in the Ubiquitin Recognition of a UIM Domain.
J.Mol.Biol., 396, 2010

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