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PDB: 541 件

5YT6
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BU of 5yt6 by Molmil
Crystal structure of TAX1BP1 UBZ2 in complex with mono-ubiquitin
分子名称: 1,2-ETHANEDIOL, GLYCEROL, SULFATE ION, ...
著者Pan, L, Hu, S.
登録日2017-11-17
公開日2018-07-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献Mechanistic Insights into Recognitions of Ubiquitin and Myosin VI by Autophagy Receptor TAX1BP1.
J. Mol. Biol., 430, 2018
4UN2
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BU of 4un2 by Molmil
Crystal structure of the UBA domain of Dsk2 in complex with Ubiquitin
分子名称: UBIQUITIN, UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2
著者Michielssens, S, Peters, J.H, Ban, D, Pratihar, S, Seeliger, D, Sharma, M, Giller, K, Sabo, T.M, Becker, S, Lee, D, Griesinger, C, de Groot, B.L.
登録日2014-05-23
公開日2014-08-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献A Designed Conformational Shift to Control Protein Binding Specificity.
Angew.Chem.Int.Ed.Engl., 53, 2014
4V3L
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BU of 4v3l by Molmil
RNF38-UB-UbcH5B-Ub complex
分子名称: 1,2-ETHANEDIOL, E3 UBIQUITIN-PROTEIN LIGASE RNF38, POLYUBIQUITIN-C, ...
著者Buetow, L, Gabrielsen, M, Anthony, N.G, Dou, H, Patel, A, Aitkenhead, H, Sibbet, G.J, Smith, B.O, Huang, D.T.
登録日2014-10-20
公開日2015-04-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Activation of a Primed Ring E3-E2-Ubiquitin Complex by Non-Covalent Ubiquitin.
Mol.Cell, 58, 2015
5NLI
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BU of 5nli by Molmil
Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
5NLJ
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BU of 5nlj by Molmil
Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
著者Fermani, S, Falini, G.
登録日2017-04-04
公開日2017-04-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium.
Chemistry, 24, 2018
4ZPZ
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BU of 4zpz by Molmil
Crystal Structure of Semi-synthetic Ubiquitin with Phospho-Ser65 and Ala46Cys
分子名称: Polyubiquitin-B
著者Han, C, Virdee, S.
登録日2015-05-08
公開日2015-06-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献A Versatile Strategy for the Semisynthetic Production of Ser65 Phosphorylated Ubiquitin and Its Biochemical and Structural Characterisation.
Chembiochem, 16, 2015
5GOJ
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BU of 5goj by Molmil
Lys63-linked di-ubiquitin
分子名称: D-ubiquitin, Ubiquitin
著者Gao, S, Pan, M, Zheng, Y, Liu, L.
登録日2016-07-27
公開日2016-11-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.549 Å)
主引用文献Monomer/Oligomer Quasi-Racemic Protein Crystallography
J.Am.Chem.Soc., 138, 2016
7NBB
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BU of 7nbb by Molmil
Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3
分子名称: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
著者Lange, S.M, Kulathu, Y.
登録日2021-01-26
公開日2022-08-10
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains.
Nat.Struct.Mol.Biol., 2024
5K9P
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BU of 5k9p by Molmil
Ser20 phosphorylated ubiquitin
分子名称: Polyubiquitin-B
著者Huguenin-Dezot, N, Chin, J.W.
登録日2016-06-01
公開日2016-07-20
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Synthesis of Isomeric Phosphoubiquitin Chains Reveals that Phosphorylation Controls Deubiquitinase Activity and Specificity.
Cell Rep, 16, 2016
2GBM
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BU of 2gbm by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
分子名称: ARSENIC, Ubiquitin
著者Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
登録日2006-03-10
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
3BY4
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BU of 3by4 by Molmil
Structure of Ovarian Tumor (OTU) domain in complex with Ubiquitin
分子名称: 3-AMINOPROPANE, Ubiquitin, Ubiquitin thioesterase OTU1
著者Messick, T.E, Marmorstein, R.
登録日2008-01-15
公開日2008-02-19
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural basis for ubiquitin recognition by the Otu1 ovarian tumor domain protein
J.Biol.Chem., 283, 2008
5J8P
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BU of 5j8p by Molmil
Lys27-linked diubiquitin
分子名称: D-ubiquitin, MAGNESIUM ION, ubiquitin
著者Pan, M, Gao, S, Zheng, Y.
登録日2016-04-08
公開日2016-05-18
最終更新日2022-02-09
実験手法X-RAY DIFFRACTION (1.554 Å)
主引用文献Structure of Lys27-linked diubiquitin
To Be Published
7AI0
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BU of 7ai0 by Molmil
Crystal structure of human MDM2-G443T RING domain homodimer bound to UbcH5B-Ub (Crystal form 1)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2, ...
著者Magnussen, H.M, Huang, D.T.
登録日2020-09-25
公開日2021-01-20
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.559 Å)
主引用文献Identification of a Catalytic Active but Non-Aggregating MDM2 RING Domain Variant.
J.Mol.Biol., 433, 2021
5O6T
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BU of 5o6t by Molmil
BIRC4 RING in complex with dimeric ubiquitin variant
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase XIAP, Polyubiquitin-B, ...
著者Gabrielsen, M, Buetow, L, Huang, D.T.
登録日2017-06-07
公開日2017-11-01
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献A General Strategy for Discovery of Inhibitors and Activators of RING and U-box E3 Ligases with Ubiquitin Variants.
Mol. Cell, 68, 2017
5GOI
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BU of 5goi by Molmil
Lys48-linked di-ubiquitin
分子名称: D-ubiquitin, Ubiquitin
著者Gao, S, Pan, M, Zheng, Y, Liu, L.
登録日2016-07-27
公開日2016-11-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.594 Å)
主引用文献Monomer/Oligomer Quasi-Racemic Protein Crystallography
J.Am.Chem.Soc., 138, 2016
2ZCB
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BU of 2zcb by Molmil
Crystal Structure of ubiquitin P37A/P38A
分子名称: Ubiquitin, ZINC ION
著者Kitahara, R, Tanaka, T, Sakata, E, Yamaguchi, Y, Kato, K, Yokoyama, S.
登録日2007-11-08
公開日2007-11-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of ubiquitin P37A/P38A
To be published
6FDK
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BU of 6fdk by Molmil
Structure of Chlamydia trachomatis effector protein Cdu1 bound to ubiquitin
分子名称: CHLORIDE ION, Deubiquitinase and deneddylase Dub1, Polyubiquitin-B, ...
著者Ramirez, Y, Kisker, C.
登録日2017-12-25
公開日2018-08-15
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Basis of Substrate Recognition and Covalent Inhibition of Cdu1 from Chlamydia trachomatis.
ChemMedChem, 13, 2018
2GBN
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BU of 2gbn by Molmil
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of Ubiquitin
分子名称: Ubiquitin
著者Ferraro, D.M, Ferraro, D.J, Ramaswamy, S, Robertson, A.D.
登録日2006-03-10
公開日2006-05-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
J.Mol.Biol., 359, 2006
5OXH
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BU of 5oxh by Molmil
C-terminally retracted ubiquitin T66V/L67N mutant
分子名称: SULFATE ION, Ubiquitin T66V/L67N mutant
著者Gladkova, C, Schubert, A.F, Wagstaff, J.L, Pruneda, J.P, Freund, S.M.V, Komander, D.
登録日2017-09-06
公開日2017-11-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1.
EMBO J., 36, 2017
5KYD
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BU of 5kyd by Molmil
Crystal structure of USP7 catalytic domain [V302K] mutant in complex with ubiquitin
分子名称: Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 7
著者Rouge, L, Ozen, A.
登録日2016-07-21
公開日2017-08-09
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Selectively Modulating Conformational States of USP7 Catalytic Domain for Activation.
Structure, 26, 2018
8Q00
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BU of 8q00 by Molmil
TssM-Ub-PA complex - A USP-like DUB from B. pseudomallei (193-430) reacted with Ub-PA
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, Polyubiquitin-B, ...
著者Uthoff, M, Hermanns, T, Hofmann, K, Baumann, U.
登録日2023-07-27
公開日2023-12-13
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献The structural basis for deubiquitination by the fingerless USP-type effector TssM.
Life Sci Alliance, 7, 2024
5OXI
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BU of 5oxi by Molmil
C-terminally retracted ubiquitin L67S mutant
分子名称: SULFATE ION, Ubiquitin L67S mutant
著者Gladkova, C.G, Schubert, A.F, Wagstaff, J.L, Pruneda, J.N, Freund, S.M.V, Komander, D.
登録日2017-09-06
公開日2017-11-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献An invisible ubiquitin conformation is required for efficient phosphorylation by PINK1.
EMBO J., 36, 2017
4K1R
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BU of 4k1r by Molmil
Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain and Ubiquitin
分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, CHLORIDE ION, ...
著者Shrestha, R.K, Das, C.
登録日2013-04-05
公開日2014-04-23
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.632 Å)
主引用文献Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product.
Biochemistry, 53, 2014
6HEI
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BU of 6hei by Molmil
Structure of the catalytic domain of USP28 (insertion deleted) bound to Ubiquitin-PA
分子名称: 1,2-ETHANEDIOL, Polyubiquitin-B, Ubiquitin carboxyl-terminal hydrolase 28,Ubiquitin carboxyl-terminal hydrolase 28
著者Gersch, M, Komander, D.
登録日2018-08-20
公開日2019-03-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Distinct USP25 and USP28 Oligomerization States Regulate Deubiquitinating Activity.
Mol.Cell, 74, 2019
5X3N
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BU of 5x3n by Molmil
Crystal structure of DiUb-K6
分子名称: PHOSPHATE ION, Polyubiquitin-B
著者Man, P, Shuai, G, Qian, Q, Lei, L.
登録日2017-02-06
公開日2017-04-12
実験手法X-RAY DIFFRACTION (1.649 Å)
主引用文献Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution.
To Be Published

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件を2024-08-14に公開中

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