PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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8TDW	ssRNA bound SAMHD1 T open Descriptor: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, RNA (5'-R(P*CP*CP*GP*AP*CP*C)-3'), ... Authors: Sung, M, Huynh, K, Han, S. Deposit date: 2023-07-05 Release date: 2023-11-22 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1. Nucleic Acids Res., 51, 2023
8TDV	ssRNA bound SAMHD1 T closed Descriptor: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, FE (III) ION, RNA (5'-R(P*CP*CP*GP*AP*CP*CP*C)-3'), ... Authors: Sung, M, Huynh, K, Han, S. Deposit date: 2023-07-05 Release date: 2023-12-20 Method: ELECTRON MICROSCOPY (3.44 Å) Cite: Guanine-containing ssDNA and RNA induce dimeric and tetrameric structural forms of SAMHD1. Nucleic Acids Res., 51, 2023
7WAZ	PlmCasX-sgRNAv1-dsDNA ternary complex at ts loading state Descriptor: NTS-DNA, RNA (115-MER), TS-DNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
6MWN	Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx Descriptor: Fab HAVx Heavy Chain, Fab HAVx Light Chain, HAV dV RNA (92-MER) Authors: Koirala, D, Shao, Y, Piccirilli, J.A. Deposit date: 2018-10-29 Release date: 2019-08-14 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.838 Å) Cite: A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites. Nat Commun, 10, 2019
7L1T	Crystal structure of human holo SepSecS Descriptor: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, O-phosphoseryl-tRNA(Sec) selenium transferase, PHOSPHATE ION Authors: Puppala, A, Castillo Suchkou, J, Simonovic, M. Deposit date: 2020-12-15 Release date: 2022-02-09 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural basis for the tRNA-dependent activation of the terminal complex of selenocysteine synthesis in humans. Nucleic Acids Res., 2023
7WB0	PlmCasX-sgRNAv1-dsDNA ternary complex at nts loading state with flexible H2 domain Descriptor: NTS-DNA, RNA (115-MER), TS-DNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
7WAY	PlmCasX-sgRNAv1-dsDNA ternary complex at nts loading state Descriptor: DNA (27-MER), DNA (33-MER), RNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
7WB1	PlmCasX-sgRNAv2-dsDNA ternary complex at nts loading state Descriptor: NTS-DNA, RNA (121-MER), TS-DNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
3E9O	Crystal Structure of Yeast Prp8, Residues 1836-2092 Descriptor: Pre-mRNA-splicing factor 8 Authors: Pena, V, Rozov, A, Wahl, M.C. Deposit date: 2008-08-22 Release date: 2008-10-07 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and function of an RNase H domain at the heart of the spliceosome. Embo J., 27, 2008
3E9P	Crystal Structure of Yeast Prp8, Residues 1827-2092 Descriptor: Pre-mRNA-splicing factor 8 Authors: Pena, V, Rozov, A, Wahl, M.C. Deposit date: 2008-08-22 Release date: 2008-10-07 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure and function of an RNase H domain at the heart of the spliceosome. Embo J., 27, 2008
3ADC	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 2) Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. Deposit date: 2010-01-18 Release date: 2010-07-28 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
3ADD	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 3) Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. Deposit date: 2010-01-18 Release date: 2010-07-28 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
8I2J	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1-(4-methoxyphenyl)ethanone, SULFATE ION, TRYPTOPHANYL-5'AMP, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.65 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I27	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 4-methoxybenzenecarbonitrile, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2M	The crystal structure of homodimeric E. coli tryptophanyl-tRNA synthetase bound with niraparib at one of its two active sites Descriptor: 2-{4-[(3S)-piperidin-3-yl]phenyl}-2H-indazole-7-carboxamide, SULFATE ION, TRYPTOPHANYL-5'AMP, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2A	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 5-METHOXYBENZIMIDAZOLE, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.35 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2C	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, 4-methoxyaniline, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.07 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I2L	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment at the dimerization interface Descriptor: 1,2-ETHANEDIOL, CHLORZOXAZONE, SULFATE ION, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-14 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8I1Z	E. coli tryptophanyl-tRNA synthetase bound with a chemical fragment Descriptor: 1-(2,3-dihydro-1-benzofuran-5-yl)ethanone, SULFATE ION, TRYPTOPHANYL-5'AMP, ... Authors: Xiang, M, Zhou, H. Deposit date: 2023-01-13 Release date: 2023-04-12 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: An asymmetric structure of bacterial TrpRS supports the half-of-the-sites catalytic mechanism and facilitates antimicrobial screening. Nucleic Acids Res., 51, 2023
8GKH	Structure of the Spizellomyces punctatus Fanzor (SpuFz) in complex with omega RNA and target DNA Descriptor: DNA (35-MER), DNA (5'-D(P*CP*GP*GP*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3'), MAGNESIUM ION, ... Authors: Xu, P, Saito, M, Zhang, F. Deposit date: 2023-03-19 Release date: 2023-07-05 Last modified: 2023-08-30 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Fanzor is a eukaryotic programmable RNA-guided endonuclease. Nature, 620, 2023
3ADB	Crystal structure of O-phosphoseryl-tRNA kinase complexed with selenocysteine tRNA and AMPPNP (crystal type 1) Descriptor: L-seryl-tRNA(Sec) kinase, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Itoh, Y, Chiba, S, Sekine, S, Yokoyama, S. Deposit date: 2010-01-18 Release date: 2010-07-28 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural Basis for the Major Role of O-Phosphoseryl-tRNA Kinase in the UGA-Specific Encoding of Selenocysteine Mol.Cell, 39, 2010
3K4E	Puf3 RNA binding domain bound to Cox17 RNA 3' UTR recognition sequence site A Descriptor: RNA (5'-R(P*CP*UP*UP*GP*UP*AP*UP*AP*UP*A)-3'), mRNA-binding protein PUF3 Authors: Zhu, D, Stumpf, C.R, Krahn, J.M, Wickens, M, Hall, T.M.T. Deposit date: 2009-10-05 Release date: 2009-10-27 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.2 Å) Cite: A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs. Proc.Natl.Acad.Sci.USA, 106, 2009
5U36	Crystal Structure Of A Mutant M. Jannashii Tyrosyl-tRNA Synthetase Descriptor: Tyrosine--tRNA ligase Authors: Luo, X, Fu, G, Zhu, X, Wilson, I.A, Wang, F. Deposit date: 2016-12-01 Release date: 2017-06-07 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.03 Å) Cite: Genetically encoding phosphotyrosine and its nonhydrolyzable analog in bacteria. Nat. Chem. Biol., 13, 2017
2R93	Elongation complex of RNA polymerase II with a hepatitis delta virus-derived RNA stem loop Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Lehmann, E, Brueckner, F, Cramer, P. Deposit date: 2007-09-12 Release date: 2007-11-27 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (4 Å) Cite: Molecular basis of RNA-dependent RNA polymerase II activity. Nature, 450, 2007
2R92	Elongation complex of RNA polymerase II with artificial RdRP scaffold Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Lehmann, E, Brueckner, F, Cramer, P. Deposit date: 2007-09-12 Release date: 2007-11-27 Last modified: 2017-10-25 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Molecular basis of RNA-dependent RNA polymerase II activity. Nature, 450, 2007

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