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8IR3
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BU of 8ir3 by Molmil
human nuclear pre-60S ribosomal particle - State B'
Descriptor: 28S rRNA, 5.8S rRNA, 5S RNA, ...
Authors:Zhang, Y, Gao, N.
Deposit date:2023-03-17
Release date:2023-08-09
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles.
Cell Res., 33, 2023
8IPY
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BU of 8ipy by Molmil
human nuclear pre-60S ribosomal particle - State D'
Descriptor: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
Authors:Zhang, Y, Gao, N.
Deposit date:2023-03-15
Release date:2023-08-09
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles.
Cell Res., 33, 2023
1MJP
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BU of 1mjp by Molmil
METHIONINE APOREPRESSOR MUTANT (Q44K) COMPLEXED TO THE MINIMAL MET CONSENSUS OPERATOR
Descriptor: CONSENSUS OPERATOR DUPLEX, METHIONINE REPRESSOR
Authors:Garvie, C.W, Phillips, S.E.V.
Deposit date:1998-01-29
Release date:1999-08-02
Last modified:2023-08-02
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Direct and indirect readout in mutant Met repressor-operator complexes.
Structure Fold.Des., 8, 2000
4AGP
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BU of 4agp by Molmil
Structure of the p53 core domain mutant Y220C bound to the stabilizing small molecule PhiKan5176
Descriptor: 2-{[4-(diethylamino)piperidin-1-yl]methyl}-6-iodo-4-(3-phenoxyprop-1-yn-1-yl)phenol, CELLULAR TUMOR ANTIGEN P53, ZINC ION
Authors:Joerger, A.C, Wilcken, R, Fersht, A.R, Boeckler, F.M.
Deposit date:2012-01-30
Release date:2012-03-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Halogen-Enriched Fragment Libraries as Leads for Drug Rescue of Mutant P53.
J.Am.Chem.Soc., 134, 2012
3ANG
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BU of 3ang by Molmil
Crystal structure of Thermus thermophilus FadR in complex with E. coli-derived dodecyl-CoA
Descriptor: DODECYL-COA, Transcriptional repressor, TetR family
Authors:Agari, Y, Sakamoto, K, Agari, K, Kuramitsu, S, Shinkai, A.
Deposit date:2010-09-01
Release date:2011-03-09
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation.
Microbiology, 157, 2011
4AGM
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BU of 4agm by Molmil
Structure of the p53 core domain mutant Y220C bound to the stabilizing small molecule PhiKan5086
Descriptor: 2-{[4-(DIETHYLAMINO)PIPERIDIN-1-YL]METHYL}-4,6-DIIODOPHENOL, CELLULAR TUMOR ANTIGEN P53, ZINC ION
Authors:Joerger, A.C, Wilcken, R, Boeckler, F.M, Fersht, A.R.
Deposit date:2012-01-30
Release date:2012-03-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Halogen-Enriched Fragment Libraries as Leads for Drug Rescue of Mutant P53.
J.Am.Chem.Soc., 134, 2012
5FLX
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BU of 5flx by Molmil
Mammalian 40S HCV-IRES complex
Descriptor: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ...
Authors:Yamamoto, H, Collier, M, Loerke, J, Ismer, J, Schmidt, A, Hilal, T, Sprink, T, Yamamoto, K, Mielke, T, Burger, J, Shaikh, T.R, Dabrowski, M, Hildebrand, P.W, Scheerer, P, Spahn, C.M.T.
Deposit date:2015-10-28
Release date:2015-12-23
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Molecular Architecture of the Ribosome-Bound Hepatitis C Virus Internal Ribosomal Entry Site RNA.
Embo J., 34, 2015
4AGL
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BU of 4agl by Molmil
Structure of the p53 core domain mutant Y220C bound to the stabilizing small molecule PhiKan784
Descriptor: 2,4-BIS(IODANYL)-6-[[METHYL-(1-METHYLPIPERIDIN-4-YL)AMINO]METHYL]PHENOL, CELLULAR TUMOR ANTIGEN P53, ZINC ION
Authors:Joerger, A.C, Wilcken, R, Boeckler, F.M, Fersht, A.R.
Deposit date:2012-01-30
Release date:2012-03-21
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Halogen-Enriched Fragment Libraries as Leads for Drug Rescue of Mutant P53.
J.Am.Chem.Soc., 134, 2012
3QOP
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BU of 3qop by Molmil
Domain-domain flexibility leads to allostery within the camp receptor protein (CRP)
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, GLYCEROL
Authors:Knapp, J, White, M.A, Lee, J.C.
Deposit date:2011-02-10
Release date:2012-04-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Domain-Domain Flexibility Leads to Allostery within the Camp Receptor Protein (Crp)
To be Published
3RPQ
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BU of 3rpq by Molmil
Domain-domain flexibility leads to allostery within the camp receptor protein (CRP)
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, PHOSPHATE ION
Authors:Knapp, J, White, M.A, Lee, J.C.
Deposit date:2011-04-27
Release date:2012-05-02
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Domain-Domain Flexibility Leads to Allostery within the Cam Receptor Protein (Crp)
To be Published
9F1S
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BU of 9f1s by Molmil
Structure of UP1 S4ES6E phosphomimetic mutant
Descriptor: Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed
Authors:Dunnett, L, Prischi, F.
Deposit date:2024-04-20
Release date:2024-05-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of UP1 S4ES6E phosphomimetic mutant
To Be Published
7OS9
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BU of 7os9 by Molmil
Crystal Structure of Domain Swapped Trp Repressor V58I Variant with purification tag
Descriptor: IMIDAZOLE, Trp operon repressor
Authors:Sprenger, J, Lawson, C.L, Lo Leggio, L, Von Wachenfeldt, C, Carey, J.
Deposit date:2021-06-08
Release date:2021-07-14
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Crystal structures of Val58Ile tryptophan repressor in a domain-swapped array in the presence and absence of L-tryptophan.
Acta Crystallogr.,Sect.F, 77, 2021
6YSR
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BU of 6ysr by Molmil
Structure of the P+9 stalled ribosome complex
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V.
Deposit date:2020-04-23
Release date:2020-08-19
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Mechanism of ribosome rescue by alternative ribosome-rescue factor B.
Nat Commun, 11, 2020
9EYR
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BU of 9eyr by Molmil
VDR complex with gemini analog UG-480
Descriptor: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{R})-5-methyl-1-[(1~{S},2~{S})-2-(3-methyl-3-oxidanyl-butyl)cyclopropyl]-5-oxidanyl-hexyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol, Nuclear receptor coactivator 1, Vitamin D3 receptor A
Authors:Rochel, N.
Deposit date:2024-04-09
Release date:2024-06-19
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Design, Synthesis, and Biological Evaluation of New Type of Gemini Analogues with a Cyclopropane Moiety in Their Side Chain.
J.Med.Chem., 67, 2024
9EZ1
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BU of 9ez1 by Molmil
Vitamin D receptor in complex with 1,4a,25-trihydroxyvitamin D3
Descriptor: 1,4a,25-trihydroxyvitamin D3, ACETATE ION, Nuclear receptor coactivator 2, ...
Authors:Rochel, N.
Deposit date:2024-04-10
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:4-Hydroxy-1 alpha ,25-Dihydroxyvitamin D 3 : Synthesis and Structure-Function Study.
Biomolecules, 14, 2024
9EZ2
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BU of 9ez2 by Molmil
Vitamin D receptor complex with 1,4b,25-trihydroxyvitamin D3
Descriptor: 1,4b,25-trihydroxyvitamin D3, ACETATE ION, Nuclear receptor coactivator 2, ...
Authors:Rochel, N.
Deposit date:2024-04-10
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:4-Hydroxy-1 alpha ,25-Dihydroxyvitamin D 3 : Synthesis and Structure-Function Study.
Biomolecules, 14, 2024
9FBF
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BU of 9fbf by Molmil
VDR complex with UG-481
Descriptor: (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(1~{S})-5-methyl-1-[(1~{R},2~{R})-2-(3-methyl-3-oxidanyl-butyl)cyclopropyl]-5-oxidanyl-hexyl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol, Nuclear receptor coactivator 1, Vitamin D3 receptor A
Authors:Rochel, N.
Deposit date:2024-05-13
Release date:2024-06-19
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Design, Synthesis, and Biological Evaluation of New Type of Gemini Analogues with a Cyclopropane Moiety in Their Side Chain.
J.Med.Chem., 67, 2024
6YSU
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BU of 6ysu by Molmil
Structure of the P+0 ArfB-ribosome complex in the post-hydrolysis state
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V.
Deposit date:2020-04-23
Release date:2020-08-19
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanism of ribosome rescue by alternative ribosome-rescue factor B.
Nat Commun, 11, 2020
9GEA
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BU of 9gea by Molmil
Structure of UP1 S4DS6D phosphomimetic mutant
Descriptor: Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed
Authors:Dunnett, L, Prischi, F.
Deposit date:2024-08-07
Release date:2024-08-21
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Structure of UP1 S4DS6D phosphomimetic mutant
To Be Published
8WD2
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BU of 8wd2 by Molmil
The Crystal Structure of p53 from Biortus.
Descriptor: 1,2-ETHANEDIOL, Cellular tumor antigen p53, PHOSPHATE ION, ...
Authors:Wang, F, Cheng, W, Yuan, Z, Qi, J, Lu, Y.
Deposit date:2023-09-14
Release date:2023-10-04
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Crystal Structure of p53 from Biortus.
To Be Published
6QUL
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BU of 6qul by Molmil
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Descriptor: 23S rRNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ...
Authors:Scaiola, A, Leibundgut, M, Boehringer, D, Ritz, D.
Deposit date:2019-02-27
Release date:2019-04-10
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural basis of translation inhibition by cadazolid, a novel quinoxolidinone antibiotic.
Sci Rep, 9, 2019
7O41
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BU of 7o41 by Molmil
Hexameric composite model of the Inner Membrane Complex (IMC) with the Arches from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwG protein, TrwK protein, TrwM protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-04
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7O43
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BU of 7o43 by Molmil
TrwK/VirB4unbound dimer complex from R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwK protein
Authors:Vadakkepat, A.K, Mace, K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-04
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7O3J
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BU of 7o3j by Molmil
O-layer structure (TrwH/VirB7, TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-01
Release date:2022-06-22
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7O3V
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BU of 7o3v by Molmil
Stalk complex structure (TrwJ/VirB5-TrwI/VirB6) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwI protein, TrwJ protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-03
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022

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PDB entries from 2024-11-13

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