Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6UHJ
DownloadVisualize
BU of 6uhj by Molmil
X-ray Structure of C148 mGFP
Descriptor: C148 mGFP
Authors:Winegar, P.W, Hayes, O.G, McMillan, J.R, Figg, C.A, Focia, P.J, Mirkin, C.A.
Deposit date:2019-09-27
Release date:2020-03-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:DNA-Directed Protein Packing within Single Crystals.
Chem, 6, 2020
6UN6
DownloadVisualize
BU of 6un6 by Molmil
Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-NO2Y); ih circular permutant (50-51)
Descriptor: Green fluorescent protein
Authors:Lin, C.-Y, Boxer, S.G.
Deposit date:2019-10-10
Release date:2020-10-14
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems.
J.Phys.Chem.B, 124, 2020
2QRF
DownloadVisualize
BU of 2qrf by Molmil
Green Fluorescent Protein: Cyclized-only Intermediate of Chromophore Maturation in the Q183E variant
Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, MAGNESIUM ION
Authors:Wood, T.I, Barondeau, D.P, Hitomi, C, Tainer, J.A, Getzoff, E.D.
Deposit date:2007-07-28
Release date:2009-04-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Green Fluorescent Protein Chromophore - Cyclized Intermediate
To be Published
1QYF
DownloadVisualize
BU of 1qyf by Molmil
Crystal structure of matured green fluorescent protein R96A variant
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, green-fluorescent protein
Authors:Barondeau, D.P, Putnam, C.D, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2003-09-10
Release date:2003-09-30
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures.
Proc.Natl.Acad.Sci.Usa, 100, 2003
4P1Q
DownloadVisualize
BU of 4p1q by Molmil
GREEN FLUORESCENT PROTEIN E222H VARIANT
Descriptor: Green fluorescent protein, SODIUM ION
Authors:Klein, M, Carius, Y, Auerbach, D, Franz, S, Jung, G, Lancaster, C.R.D.
Deposit date:2014-02-27
Release date:2014-07-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Replacement of Highly Conserved E222 by the Photostable Non-photoconvertible Histidine in GFP.
Chembiochem, 15, 2014
3LVA
DownloadVisualize
BU of 3lva by Molmil
Crystal structure of colorless GFP-like protein from Aequorea coerulescens
Descriptor: GLYCEROL, Green fluorescent protein, SULFATE ION
Authors:Pletneva, N.V, Pletnev, V.Z, Pletnev, S.V.
Deposit date:2010-02-19
Release date:2010-03-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural evidence for a dehydrated intermediate in green fluorescent protein chromophore biosynthesis.
J.Biol.Chem., 285, 2010
2Y0G
DownloadVisualize
BU of 2y0g by Molmil
X-ray structure of Enhanced Green Fluorescent Protein (EGFP)
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:Royant, A, Noirclerc-Savoye, M.
Deposit date:2010-12-02
Release date:2011-04-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Stabilizing Role of Glutamic Acid 222 in the Structure of Enhanced Green Fluorescent Protein.
J.Struct.Biol., 174, 2011
5J2O
DownloadVisualize
BU of 5j2o by Molmil
Crystal structure of the cyan fluorescence protein Cerulean S175G mutant
Descriptor: Green fluorescent protein
Authors:Park, S.-W, Kang, S, Yoon, T.-S.
Deposit date:2016-03-29
Release date:2016-04-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the cyan fluorescent protein Cerulean-S175G
Acta Crystallogr.,Sect.F, 72, 2016
6QUH
DownloadVisualize
BU of 6quh by Molmil
GHK tagged GFP variant crystal form II at 1.34A wavelength
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, COPPER (II) ION, ...
Authors:Huyton, T, Gorlich, D.
Deposit date:2019-02-27
Release date:2020-05-27
Last modified:2022-12-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The copper(II)-binding tripeptide GHK, a valuable crystallization and phasing tag for macromolecular crystallography.
Acta Crystallogr D Struct Biol, 76, 2020
6G7P
DownloadVisualize
BU of 6g7p by Molmil
Trichodesmium Tery_3377 (IdiA) (FutA) with iron and water ligands.
Descriptor: CHLORIDE ION, Extracellular solute-binding protein, family 1, ...
Authors:Machelett, M.M, Tews, I.
Deposit date:2018-04-06
Release date:2018-09-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and functional characterization of IdiA/FutA (Tery_3377), an iron-binding protein from the ocean diazotrophTrichodesmium erythraeum.
J. Biol. Chem., 293, 2018
1Z1Q
DownloadVisualize
BU of 1z1q by Molmil
Y66L Variant of Enhanced Green Fluorescent Protein with 374-nm Absorbing Chromophore
Descriptor: Green Fluorescent Protein, SODIUM ION
Authors:Rosenow, M.A, Patel, H.N, Wachter, R.M.
Deposit date:2005-03-04
Release date:2005-06-21
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Oxidative Chemistry in the GFP Active Site Leads to Covalent Cross-Linking of a Modified Leucine Side Chain with a Histidine Imidazole: Implications for the Mechanism of Chromophore Formation.
Biochemistry, 44, 2005
1S6Z
DownloadVisualize
BU of 1s6z by Molmil
Enhanced Green Fluorescent Protein Containing the Y66L Substitution
Descriptor: CHLORIDE ION, green fluorescent protein
Authors:Rosenow, M.A, Huffman, H.A, Phail, M.E, Wachter, R.M.
Deposit date:2004-01-28
Release date:2004-05-04
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The Crystal Structure of the Y66L Variant of Green Fluorescent Protein Supports a Cyclization-Oxidation-Dehydration Mechanism for Chromophore Maturation(,).
Biochemistry, 43, 2004
3KCS
DownloadVisualize
BU of 3kcs by Molmil
Crystal structure of PAmCherry1 in the dark state
Descriptor: PAmCherry1 protein
Authors:Malashkevich, V.N, Subach, F.V, Zencheck, W.D, Xiao, H, Filonov, G.S, Almo, S.C, Verkhusha, V.V.
Deposit date:2009-10-21
Release date:2009-11-17
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states.
Proc.Natl.Acad.Sci.USA, 106, 2009
1KYR
DownloadVisualize
BU of 1kyr by Molmil
Crystal Structure of a Cu-bound Green Fluorescent Protein Zn Biosensor
Descriptor: COPPER (II) ION, Green Fluorescent Protein, MAGNESIUM ION
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2002-02-05
Release date:2002-04-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural chemistry of a green fluorescent protein Zn biosensor.
J.Am.Chem.Soc., 124, 2002
6GP0
DownloadVisualize
BU of 6gp0 by Molmil
Structure of mEos4b in the red fluorescent state
Descriptor: Green to red photoconvertible GFP-like protein EosFP
Authors:De Zitter, E, Adam, V, Byrdin, M, Van Meervelt, L, Dedecker, P, Bourgeois, D.
Deposit date:2018-06-04
Release date:2019-05-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Mechanistic investigation of mEos4b reveals a strategy to reduce track interruptions in sptPALM.
Nat.Methods, 16, 2019
3MNP
DownloadVisualize
BU of 3mnp by Molmil
Crystal structure of the agonist form of mouse glucocorticoid receptor stabilized by (A611V, V708A, E711G) mutations at 1.50A
Descriptor: DEXAMETHASONE, GLYCEROL, Glucocorticoid receptor, ...
Authors:Schoch, G.A, Seitz, T, Benz, J, Banner, D, Stihle, M, D'Arcy, B, Thoma, R, Sterner, R, Hennig, M, Ruf, A.
Deposit date:2010-04-22
Release date:2010-09-15
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Enhancing the stability and solubility of the glucocorticoid receptor ligand-binding domain by high-throughput library screening.
J.Mol.Biol., 403, 2010
1JG4
DownloadVisualize
BU of 1jg4 by Molmil
Crystal Structure of L-isoaspartyl (D-aspartyl) O-methyltransferase with S-adenosylmethionine
Descriptor: S-ADENOSYLMETHIONINE, protein-L-isoaspartate O-methyltransferase
Authors:Griffith, S.C, Sawaya, M.R, Boutz, D, Thapar, N, Katz, J, Clarke, S, Yeates, T.O.
Deposit date:2001-06-22
Release date:2001-11-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of a protein repair methyltransferase from Pyrococcus furiosus with its L-isoaspartyl peptide substrate.
J.Mol.Biol., 313, 2001
5DTZ
DownloadVisualize
BU of 5dtz by Molmil
Crystal structure of rsFolder in the fluorescent on-state
Descriptor: DI(HYDROXYETHYL)ETHER, Green fluorescent protein
Authors:El Khatib, M, Colletier, J.P, Adam, V.
Deposit date:2015-09-18
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Rational design of ultrastable and reversibly photoswitchable fluorescent proteins for super-resolution imaging of the bacterial periplasm.
Sci Rep, 6, 2016
5V6F
DownloadVisualize
BU of 5v6f by Molmil
Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae bound to Mannotriose
Descriptor: Hemolysin-related protein, SULFATE ION, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose
Authors:De, S, Kaus, K, Sinclair, S, Case, B.C, Olson, R.
Deposit date:2017-03-16
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins.
PLoS Pathog., 14, 2018
2F8A
DownloadVisualize
BU of 2f8a by Molmil
Crystal structure of the selenocysteine to glycine mutant of human glutathione peroxidase 1
Descriptor: Glutathione peroxidase 1, MALONIC ACID
Authors:Kavanagh, K.L, Johansson, C, Smee, C, Gileadi, O, von Delft, F, Weigelt, J, Sundstrom, M, Edwards, A, Oppermann, U, Structural Genomics Consortium (SGC)
Deposit date:2005-12-02
Release date:2005-12-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of the selenocysteine to glycine mutant of human glutathione peroxidase 1
To be Published
5DTY
DownloadVisualize
BU of 5dty by Molmil
Crystal structure of rsEGFP2 in the non-fluorescent off-state
Descriptor: Green fluorescent protein
Authors:Adam, V, Dos-Santos Martins, A.
Deposit date:2015-09-18
Release date:2016-01-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Rational design of ultrastable and reversibly photoswitchable fluorescent proteins for super-resolution imaging of the bacterial periplasm.
Sci Rep, 6, 2016
3W1D
DownloadVisualize
BU of 3w1d by Molmil
Structure of a pressure sensitive YFP variant YFP-G3
Descriptor: Green Fluorescent protein
Authors:Imada, K, Yoshizawa, K, Kinoshita, M, Watanabe, T.M.
Deposit date:2012-11-14
Release date:2013-10-02
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure.
Plos One, 8, 2013
3DPX
DownloadVisualize
BU of 3dpx by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 5000 Atmospheres: Structure 26 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DQO
DownloadVisualize
BU of 3dqo by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 2: Structure 2 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DQ5
DownloadVisualize
BU of 3dq5 by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1960 Atmospheres: Structure 19 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon