Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4PC7
DownloadVisualize
BU of 4pc7 by Molmil
Elongation factor Tu:Ts complex in a near GTP conformation.
Descriptor: (1S,2S,3E,5E,7E,10S,11S,12S)-12-[(2R,4E,6E,8Z,10R,12E,14E,16Z,18S,19Z)-10,18-DIHYDROXY-12,16,19-TRIMETHYL-11,22-DIOXOOX ACYCLODOCOSA-4,6,8,12,14,16,19-HEPTAEN-2-YL]-2,11-DIHYDROXY-1,10-DIMETHYL-9-OXOTRIDECA-3,5,7-TRIEN-1-YL 6-DEOXY-2,4-DI-O-METHYL-BETA-L-GALACTOPYRANOSIDE, Elongation factor Ts, Elongation factor Tu 1, ...
Authors:Thirup, S.S.
Deposit date:2014-04-14
Release date:2015-05-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (3.6003 Å)
Cite:Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu.
J.Struct.Biol., 191, 2015
6XYK
DownloadVisualize
BU of 6xyk by Molmil
Crystal structure of bovine trypsin at room temperature.
Descriptor: BENZAMIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Jensen, M.
Deposit date:2020-01-30
Release date:2021-01-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.50000036 Å)
Cite:Femtosecond structure of bovine trypsin at room temperature
To Be Published
6Y7R
DownloadVisualize
BU of 6y7r by Molmil
Structure of Chloroflexus aggregans Cagg_3753 LOV domain C85A A56P variant (CagFbFP)
Descriptor: FLAVIN MONONUCLEOTIDE, Multi-sensor hybrid histidine kinase
Authors:Remeeva, A, Nazarenko, V, Kovalev, K, Gordeliy, V, Gushchin, I.
Deposit date:2020-03-02
Release date:2020-04-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Effects of Proline Substitutions on the Thermostable LOV Domain from Chloroflexus aggregans
Crystals, 2020
6YFU
DownloadVisualize
BU of 6yfu by Molmil
Virus-like particle of Wenzhou levi-like virus 4
Descriptor: coat protein
Authors:Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K.
Deposit date:2020-03-26
Release date:2020-09-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (4.018 Å)
Cite:Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes.
Sci Adv, 6, 2020
5ODK
DownloadVisualize
BU of 5odk by Molmil
Single-stranded DNA-binding protein from bacteriophage Enc34, C-terminal truncation
Descriptor: GLYCEROL, PHOSPHATE ION, single-stranded DNA-binding protein
Authors:Cernooka, E, Rumnieks, J, Kazaks, A, Tars, K.
Deposit date:2017-07-05
Release date:2017-10-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Structural Basis for DNA Recognition of a Single-stranded DNA-binding Protein from Enterobacter Phage Enc34.
Sci Rep, 7, 2017
5ODJ
DownloadVisualize
BU of 5odj by Molmil
Single-stranded DNA-binding protein from bacteriophage Enc34
Descriptor: CHLORIDE ION, MAGNESIUM ION, Single-stranded DNA-binding protein
Authors:Cernooka, E, Rumnieks, J, Kazaks, A, Tars, K.
Deposit date:2017-07-05
Release date:2017-10-25
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis for DNA Recognition of a Single-stranded DNA-binding Protein from Enterobacter Phage Enc34.
Sci Rep, 7, 2017
6CY6
DownloadVisualize
BU of 6cy6 by Molmil
Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Escherichia coli in complex with tris(hydroxymethyl)aminomethane.
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Filippova, E.V, Minasov, G, Kiryukhina, O, Anderson, W.F, Satchell, K.J.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2018-04-04
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Analysis of crystalline and solution states of ligand-free spermidine N-acetyltransferase (SpeG) from Escherichia coli.
Acta Crystallogr D Struct Biol, 75, 2019
7B24
DownloadVisualize
BU of 7b24 by Molmil
DtxR-like iron-dependent regulator IdeR (P39G variant) complexed with cobalt and its consensus DNA-binding sequence
Descriptor: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence
Authors:Maurer, D, Marcos-Torres, F.J, Griese, J.J.
Deposit date:2020-11-26
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout.
Nucleic Acids Res., 49, 2021
7B1Y
DownloadVisualize
BU of 7b1y by Molmil
DtxR-like iron-dependent regulator IdeR complexed with cobalt and its consensus DNA-binding sequence
Descriptor: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence
Authors:Maurer, D, Marcos-Torres, F.J, Griese, J.J.
Deposit date:2020-11-25
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout.
Nucleic Acids Res., 49, 2021
7B23
DownloadVisualize
BU of 7b23 by Molmil
DtxR-like iron-dependent regulator IdeR complexed with cobalt and the SACE_2689 promoter DNA-binding sequence
Descriptor: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, SACE_2689 promoter DNA-binding sequence
Authors:Maurer, D, Marcos-Torres, F.J, Griese, J.J.
Deposit date:2020-11-26
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout.
Nucleic Acids Res., 49, 2021
7B20
DownloadVisualize
BU of 7b20 by Molmil
DtxR-like iron-dependent regulator IdeR complexed with iron and its consensus DNA-binding sequence
Descriptor: DtxR family iron (Metal) dependent repressor, FE (II) ION, consensus DNA-binding sequence
Authors:Maurer, D, Marcos-Torres, F.J, Griese, J.J.
Deposit date:2020-11-25
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout.
Nucleic Acids Res., 49, 2021
7B25
DownloadVisualize
BU of 7b25 by Molmil
DtxR-like iron-dependent regulator IdeR (Q43A variant) complexed with cobalt and its consensus DNA-binding sequence
Descriptor: COBALT (II) ION, DtxR family iron (Metal) dependent repressor, consensus DNA-binding sequence
Authors:Maurer, D, Marcos-Torres, F.J, Griese, J.J.
Deposit date:2020-11-26
Release date:2021-03-03
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:The bacterial iron sensor IdeR recognizes its DNA targets by indirect readout.
Nucleic Acids Res., 49, 2021
5O52
DownloadVisualize
BU of 5o52 by Molmil
Glycogen Phosphorylase b in complex with 33b
Descriptor: (2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(4-naphthalen-2-yl-1~{H}-imidazol-2-yl)oxane-3,4-diol, Glycogen phosphorylase, muscle form, ...
Authors:Kantsadi, A.L, Kyriakis, E, Stravodimos, G.A, Solovou, T.G.A, Chatzileontiadou, D.S, Skamnaki, V.T, Leonidas, D.D.
Deposit date:2017-05-31
Release date:2017-09-27
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Nanomolar Inhibitors of Glycogen Phosphorylase Based on beta-d-Glucosaminyl Heterocycles: A Combined Synthetic, Enzyme Kinetic, and Protein Crystallography Study.
J. Med. Chem., 60, 2017
5O50
DownloadVisualize
BU of 5o50 by Molmil
Glycogen Phosphorylase b in complex with 33a
Descriptor: (2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(4-phenyl-1~{H}-imidazol-2-yl)oxane-3,4-diol, Glycogen phosphorylase, muscle form, ...
Authors:Kantsadi, A.L, Kyriakis, E, Stravodimos, G.A, Solovou, T.G.A, Chatzileontiadou, D.S, Skamnaki, V.T, Leonidas, D.D.
Deposit date:2017-05-31
Release date:2017-09-27
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Nanomolar Inhibitors of Glycogen Phosphorylase Based on beta-d-Glucosaminyl Heterocycles: A Combined Synthetic, Enzyme Kinetic, and Protein Crystallography Study.
J. Med. Chem., 60, 2017
5O9A
DownloadVisualize
BU of 5o9a by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J-L504Y-N775S) in complex with glutamate and BPAM121 at 1.78 A resolution
Descriptor: 1,2-ETHANEDIOL, 7-chloro-4-(2-fluoroethyl)-2,3-dihydro-1,2,4-benzothiadiazine 1,1-dioxide, CHLORIDE ION, ...
Authors:Laulumaa, S, Rovinskaja, K, Frydenvang, K.A, Kastrup, J.S.
Deposit date:2017-06-16
Release date:2018-01-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:7-Phenoxy-Substituted 3,4-Dihydro-2H-1,2,4-benzothiadiazine 1,1-Dioxides as Positive Allosteric Modulators of alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid (AMPA) Receptors with Nanomolar Potency.
J. Med. Chem., 61, 2018
5OEW
DownloadVisualize
BU of 5oew by Molmil
Crystal structure of the GluA2 ligand-binding domain (S1S2J) in complex with glutamate and positive allosteric modulator BPAM538
Descriptor: 4-cyclopropyl-7-(3-methoxyphenoxy)-2,3-dihydro-1$l^{6},2,4-benzothiadiazine 1,1-dioxide, ACETATE ION, GLUTAMIC ACID, ...
Authors:Larsen, A.P, Frydenvang, K.A, Kastrup, J.S.
Deposit date:2017-07-10
Release date:2018-01-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:7-Phenoxy-Substituted 3,4-Dihydro-2H-1,2,4-benzothiadiazine 1,1-Dioxides as Positive Allosteric Modulators of alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic Acid (AMPA) Receptors with Nanomolar Potency.
J. Med. Chem., 61, 2018
5OAX
DownloadVisualize
BU of 5oax by Molmil
Galectin-3c in complex with thiogalactoside derivate
Descriptor: 5,6-bis(fluoranyl)-3-[[(2~{S},3~{R},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{S},5~{R},6~{R})-4-[4-(3-fluorophenyl)-1,2,3-triazol-1-yl]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]sulfanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl]oxymethyl]chromen-2-one, Galectin-3
Authors:Nilsson, U.J, Peterson, K, Hakansson, M, Logan, D.T.
Deposit date:2017-06-25
Release date:2018-05-02
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Systematic Tuning of Fluoro-galectin-3 Interactions Provides Thiodigalactoside Derivatives with Single-Digit nM Affinity and High Selectivity.
J. Med. Chem., 61, 2018
8A3A
DownloadVisualize
BU of 8a3a by Molmil
MTH1 in complex with TH013074
Descriptor: 4-(4-methylphenyl)-1~{H}-quinazolin-2-one, 7,8-dihydro-8-oxoguanine triphosphatase, SULFATE ION
Authors:Liu, H, Scaletti, E, Stenmark, P.
Deposit date:2022-06-07
Release date:2023-09-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:MTH1 in complex with TH013074
To Be Published
8A34
DownloadVisualize
BU of 8a34 by Molmil
MTH1 in complex with TH013071
Descriptor: 5-(2-phenylphenyl)-1H-pyrimidine-2,4-dione, 7,8-dihydro-8-oxoguanine triphosphatase, ACETATE ION, ...
Authors:Liu, H, Scaletti, E, Stenmark, P.
Deposit date:2022-06-07
Release date:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:MTH1 in complex with TH013071
To Be Published
7APR
DownloadVisualize
BU of 7apr by Molmil
Bacillithiol Disulfide Reductase Bdr (YpdA) from Staphylococcus aureus
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, YpdA family putative bacillithiol disulfide reductase Bdr
Authors:Hammerstad, M, Hersleth, H.-P.
Deposit date:2020-10-19
Release date:2020-12-30
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:The Crystal Structures of Bacillithiol Disulfide Reductase Bdr (YpdA) Provide Structural and Functional Insight into a New Type of FAD-Containing NADPH-Dependent Oxidoreductase.
Biochemistry, 59, 2020
7B6B
DownloadVisualize
BU of 7b6b by Molmil
The carbohydrate binding module family 48 (CBM48) and carboxy-terminal carbohydrate esterase family 1 (CE1) domains of the multidomain esterase DmCE1B from Dysgonomonas mossii in complex with methyl ferulate
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Carbohydrate Esterase family 1 protein with an N-terminal carbohydrate binding module family 48, ...
Authors:Mazurkewich, S, Kmezik, C, Branden, G, Larsbrink, J.
Deposit date:2020-12-07
Release date:2021-03-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:A polysaccharide utilization locus from the gut bacterium Dysgonomonas mossii encodes functionally distinct carbohydrate esterases.
J.Biol.Chem., 296, 2021
7B5V
DownloadVisualize
BU of 7b5v by Molmil
The carbohydrate binding module family 48 (CBM48) and carboxy-terminal carbohydrate esterase family 1 (CE1) domains of the multidomain esterase DmCE1B from Dysgonomonas mossii
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Carbohydrate Esterase family 1 protein with an N-terminal carbohydrate binding module family 48, ...
Authors:Mazurkewich, S, Kmezik, C, Branden, G, Larsbrink, J.
Deposit date:2020-12-07
Release date:2021-03-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A polysaccharide utilization locus from the gut bacterium Dysgonomonas mossii encodes functionally distinct carbohydrate esterases.
J.Biol.Chem., 296, 2021
7B65
DownloadVisualize
BU of 7b65 by Molmil
Structure of NUDT15 R139C Mutant in complex with TH7755
Descriptor: (R)-6-((2-methyl-4-(1-methyl-1H-indole-5-carbonyl)piperazin-1-yl)sulfonyl)benzo[d]oxazol-2(3H)-one, Nucleotide triphosphate diphosphatase NUDT15
Authors:Rehling, D, Stenmark, P.
Deposit date:2020-12-07
Release date:2021-03-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of NUDT15 variants enabled by a potent inhibitor reveal the structural basis for thiopurine sensitivity.
J.Biol.Chem., 296, 2021
7B63
DownloadVisualize
BU of 7b63 by Molmil
Structure of NUDT15 in complex with TH7755
Descriptor: (R)-6-((2-methyl-4-(1-methyl-1H-indole-5-carbonyl)piperazin-1-yl)sulfonyl)benzo[d]oxazol-2(3H)-one, MAGNESIUM ION, Probable 8-oxo-dGTP diphosphatase NUDT15
Authors:Rehling, D, Stenmark, P.
Deposit date:2020-12-07
Release date:2021-03-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of NUDT15 variants enabled by a potent inhibitor reveal the structural basis for thiopurine sensitivity.
J.Biol.Chem., 296, 2021
7B66
DownloadVisualize
BU of 7b66 by Molmil
Structure of NUDT15 R139H Mutant in complex with TH7755
Descriptor: (R)-6-((2-methyl-4-(1-methyl-1H-indole-5-carbonyl)piperazin-1-yl)sulfonyl)benzo[d]oxazol-2(3H)-one, Nucleotide triphosphate diphosphatase NUDT15
Authors:Rehling, D, Stenmark, P.
Deposit date:2020-12-07
Release date:2021-03-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structures of NUDT15 variants enabled by a potent inhibitor reveal the structural basis for thiopurine sensitivity.
J.Biol.Chem., 296, 2021

225399

PDB entries from 2024-09-25

PDB statisticsPDBj update infoContact PDBjnumon