PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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3J4J	Model of full-length T. thermophilus Translation Initiation Factor 2 refined against its cryo-EM density from a 30S Initiation Complex map Descriptor: Translation initiation factor IF-2 Authors: Simonetti, A, Marzi, S, Billas, I.M.L, Tsai, A, Fabbretti, A, Myasnikov, A, Roblin, P, Vaiana, A.C, Hazemann, I, Eiler, D, Steitz, T.A, Puglisi, J.D, Gualerzi, C.O, Klaholz, B.P. Deposit date: 2013-08-26 Release date: 2013-09-25 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (11.5 Å) Cite: Involvement of protein IF2 N domain in ribosomal subunit joining revealed from architecture and function of the full-length initiation factor. Proc.Natl.Acad.Sci.USA, 110, 2013
2IIC	Calcium bound structure of alpha-11 giardin Descriptor: Alpha-11 giardin, CALCIUM ION Authors: Pathuri, P, Nguyen, E.T, Luecke, H. Deposit date: 2006-09-27 Release date: 2007-04-17 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.93 Å) Cite: Apo and Calcium-bound Crystal Structures of Alpha-11 Giardin, an Unusual Annexin from Giardia lamblia J.Mol.Biol., 368, 2007
3FVR	Crystal Structure of Acetyl Xylan Esterase from Bacillus pumilus, monoclinic crystal form I Descriptor: Acetyl xylan esterase, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Krastanova, I, Cassetta, A, Lamba, D. Deposit date: 2009-01-16 Release date: 2010-01-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and functional studies of Bacillus pumilus acetyl xylan esterase To be Published
3FYT	Crystal structure of Bacillus pumilus acetyl xylan esterase S181A mutant in complex with beta-D-xylopyranose Descriptor: Acetyl xylan esterase, CHLORIDE ION, beta-D-xylopyranose Authors: Krastanova, I, Cassetta, A, Lamba, D. Deposit date: 2009-01-23 Release date: 2010-01-26 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.58 Å) Cite: Structural and functional studies of Bacillus pumilus acetyl xylan esterase To be Published
3K1V	Cocrystal structure of a mutant class-I preQ1 riboswitch Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, CALCIUM ION, PreQ1 riboswitch Authors: Klein, D.J, Edwards, T.E, Ferre-D'Amare, A.R. Deposit date: 2009-09-28 Release date: 2009-10-06 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Cocrystal Structure of a Class I Preq1 Riboswitch Reveals a Pseudoknot Recognizing an Essential Hypermodified Nucleobase Nat.Struct.Mol.Biol., 16, 2009
4N7O	Capturing the haemoglobin allosteric transition in a single crystal form; Crystal structure of half-liganded human haemoglobin with phosphate at 2.5 A resolution. Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE, ... Authors: Sugiyama, K, Shibayama, N, Park, S.Y. Deposit date: 2013-10-16 Release date: 2014-04-02 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.502 Å) Cite: Capturing the hemoglobin allosteric transition in a single crystal form J.Am.Chem.Soc., 136, 2014
4N7P	Capturing the haemoglobin allosteric transition in a single crystal form; Crystal structure of half-liganded human haemoglobin without phosphate at 2.8 A resolution. Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE, ... Authors: Sugiyama, K, Shibayama, N, Park, S.Y. Deposit date: 2013-10-16 Release date: 2014-04-02 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.809 Å) Cite: Capturing the hemoglobin allosteric transition in a single crystal form J.Am.Chem.Soc., 136, 2014
2HK9	Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with shikimate and NADP+ at 2.2 angstrom resolution Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... Authors: Gan, J.H, Prabakaran, P, Gu, Y.J, Andrykovitch, M, Li, Y, Liu, H.H, Yan, H, Ji, X. Deposit date: 2006-07-03 Release date: 2007-06-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism. Biochemistry, 46, 2007
3FVT	Crystal Structure of Acetyl Xylan Esterase from Bacillus pumilus, monoclinic crystal form II Descriptor: Acetyl xylan esterase, CHLORIDE ION, GLYCEROL Authors: Krastanova, I, Cassetta, A, Lamba, D. Deposit date: 2009-01-16 Release date: 2010-01-05 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural and functional studies of Bacillus pumilus acetyl xylan esterase To be Published
3FYU	Crystal structure of acetyl xylan esterase from Bacillus pumilus obtained in presence of D-xylose and sodium acetate Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, Acetyl xylan esterase, ... Authors: Krastanova, I, Cassetta, A, Lamba, D. Deposit date: 2009-01-23 Release date: 2010-01-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.62 Å) Cite: Structural and functional studies of Bacillus pumilus acetyl xylan esterase To be Published
2HK7	Crystal structure of shikimate dehydrogenase from aquifex aeolicus in complex with mercury at 2.5 angstrom resolution Descriptor: MERCURY (II) ION, Shikimate dehydrogenase Authors: Gan, J.H, Prabakaran, P, Gu, Y.J, Andrykovitch, M, Li, Y, Liu, H.H, Yan, H, Ji, X. Deposit date: 2006-07-03 Release date: 2007-06-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism. Biochemistry, 46, 2007
1REP	CRYSTAL STRUCTURE OF REPLICATION INITIATOR PROTEIN REPE54 OF MINI-F PLASMID COMPLEXED WITH AN ITERON DNA Descriptor: DNA (5'-D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*T)-3'), DNA (5'-D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*T)-3'), MAGNESIUM ION, ... Authors: Komori, H, Matsunaga, F, Higuchi, Y, Ishiai, M, Wada, C, Miki, K. Deposit date: 1999-04-29 Release date: 2000-02-09 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 A resolution. EMBO J., 18, 1999
1N7B	RIP-Radiation-damage Induced Phasing Descriptor: POTASSIUM ION, RNA/DNA (5'-R(*U)-D(P*(BGM))-R(P*AP*GP*GP*U)-3'), SPERMINE Authors: Ravelli, R.B.G, Leiros, H.-K.S, Pan, B, Caffrey, M, McSweeney, S. Deposit date: 2002-11-13 Release date: 2003-03-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Specific Radiation-Damage Can Be Used To Solve Macromolecular Crystal Structures Structure, 11, 2003
3BLA	Synthetic Gene Encoded DcpS bound to inhibitor DG153249 Descriptor: 5-[(1S)-1-(3-chlorophenyl)ethoxy]quinazoline-2,4-diamine, Scavenger mRNA-decapping enzyme DcpS Authors: Staker, B.L, Christensen, J, Stewart, L, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D) Deposit date: 2007-12-10 Release date: 2008-10-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.6 Å) Cite: DcpS as a therapeutic target for spinal muscular atrophy. Acs Chem.Biol., 3, 2008
4CS1	Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound. Descriptor: 5'-(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP *GP*AP*GP*CP*CP)-3', MAGNESIUM ION Authors: Huang, L, Lilley, D.M.J. Deposit date: 2014-03-03 Release date: 2014-11-19 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2 Å) Cite: A Critical Base Pair in K-Turns that Confers Folding Characteristics and Correlates with Biological Function. Nat.Commun., 5, 2014
3BL9	Synthetic Gene Encoded DcpS bound to inhibitor DG157493 Descriptor: 5-{[1-(2,3-dichlorobenzyl)piperidin-4-yl]methoxy}quinazoline-2,4-diamine, Scavenger mRNA-decapping enzyme DcpS Authors: Staker, B.L, Christensen, J, Stewart, L, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D) Deposit date: 2007-12-10 Release date: 2008-10-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: DcpS as a therapeutic target for spinal muscular atrophy. Acs Chem.Biol., 3, 2008
3BL7	Synthetic Gene Encoded DcpS bound to inhibitor DG156844 Descriptor: 5-{[1-(2-fluorobenzyl)piperidin-4-yl]methoxy}quinazoline-2,4-diamine, Scavenger mRNA-decapping enzyme DcpS Authors: Staker, B.L, Christensen, J, Stewart, L, Accelerated Technologies Center for Gene to 3D Structure (ATCG3D) Deposit date: 2007-12-10 Release date: 2008-10-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.31 Å) Cite: DcpS as a therapeutic target for spinal muscular atrophy. Acs Chem.Biol., 3, 2008
1ZJN	Human DNA Polymerase beta complexed with DNA containing an A-A mismatched primer terminus with dGTP Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ... Authors: Batra, V.K, Beard, W.A, Shock, D.D, Pedersen, L.C, Wilson, S.H. Deposit date: 2005-04-29 Release date: 2005-08-16 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.61 Å) Cite: Nucleotide-induced DNA polymerase active site motions accommodating a mutagenic DNA intermediate. STRUCTURE, 13, 2005
4N7N	Capturing the haemoglobin allosteric transition in a single crystal form; Crystal structure of full-liganded human haemoglobin with phosphate at 2.75 A resolution. Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta, PROTOPORPHYRIN IX CONTAINING FE Authors: Sugiyama, K, Shibayama, N, Park, S.Y. Deposit date: 2013-10-16 Release date: 2014-04-02 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.754 Å) Cite: Capturing the hemoglobin allosteric transition in a single crystal form J.Am.Chem.Soc., 136, 2014
1VC5	Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution Descriptor: Hepatitis Delta virus ribozyme, SODIUM ION, U1 small nuclear ribonucleoprotein A Authors: Ke, A, Zhou, K, Ding, F, Cate, J.H.D, Doudna, J.A. Deposit date: 2004-03-04 Release date: 2004-05-18 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.4 Å) Cite: A Conformational Switch controls hepatitis delta virus ribozyme catalysis NATURE, 429, 2004
1SGS	Crystal structure of a free kB DNA Descriptor: CALCIUM ION, kB DNA Authors: Huang, D.B, Phelps, C.B, Fusco, A.J, Ghosh, G. Deposit date: 2004-02-24 Release date: 2004-03-23 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of a free kappaB DNA: insights into DNA recognition by transcription factor NF-kappaB. J.Mol.Biol., 346, 2005
2HK8	Crystal structure of shikimate dehydrogenase from aquifex aeolicus at 2.35 angstrom resolution Descriptor: Shikimate dehydrogenase Authors: Gan, J.H, Prabakaran, P, Gu, Y.J, Andrykovitch, M, Li, Y, Liu, H.H, Yan, H, Ji, X. Deposit date: 2006-07-03 Release date: 2007-06-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural and biochemical analyses of shikimate dehydrogenase AroE from Aquifex aeolicus: implications for the catalytic mechanism. Biochemistry, 46, 2007
9ICM	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DOUBLE STRANDED DNA (NO 5'-PHOSPHATE) Descriptor: DNA (5'-D(*CP*AP*GP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*CP*TP*GP*T)-3'), PROTEIN (DNA POLYMERASE BETA (E.C.2.7.7.7)), ... Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1995-12-16 Release date: 1996-11-15 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity Biochemistry, 35, 1996
2LZP	Structure of NS2(2-32) GBVB protein Descriptor: NS2 peptide Authors: Montserret, R, Penin, F, Martin, A. Deposit date: 2012-10-08 Release date: 2014-04-09 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NS2 Proteins of GB Virus B and Hepatitis C Virus Share Common Protease Activities and Membrane Topologies. J.Virol., 88, 2014
8UH2	Complex of C3b with the inhibitor albicin Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Albicin, Complement C3 beta chain, ... Authors: Andersen, J.F, Lei, H, Strayer, E, Ribeiro, J.M. Deposit date: 2023-10-06 Release date: 2024-05-08 Method: ELECTRON MICROSCOPY (3.59 Å) Cite: The mechanism of a mosquito salivary inhibitor of the alternative C3 convertase is elucidated through structural analysis of its complex with C3bBb To Be Published

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