PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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7MY5	The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ000988503 Descriptor: 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide, Hexa Vinylpyrrolidone K15, MANGANESE (II) ION, ... Authors: Cuypers, M.G, Slavish, J.P, Rankovic, Z, White, S.W. Deposit date: 2021-05-20 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.38 Å) Cite: The crystal structure of wild type PA endonuclease (2009/H1N1/CALIFORNIA) in complex with SJ000988503 To Be Published
6RKY	STRUCTURE OF ESTER-HYDROLASE EH1AB1 FROM THE METAGENOME OF LAKE ARREO COMPLEXED WITH A DERIVATIVE OF BIPYRIDINE PHOSPHONATE Descriptor: DI(HYDROXYETHYL)ETHER, EH1AB1, GLYCEROL, ... Authors: Cea-Rama, I, Sanz-Aparicio, J. Deposit date: 2019-04-30 Release date: 2019-12-25 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Genetically engineered proteins with two active sites for enhanced biocatalysis and synergistic chemo- and biocatalysis Nat Catal, 3, 2020
2MJU	Solution structure of a C terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB) Descriptor: Polypyrimidine tract-binding protein 2 Authors: Esteve, V, Blatter, M, Allain, F.H.-T. Deposit date: 2014-01-16 Release date: 2014-02-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution and crystal structures of a C-terminal fragment of the neuronal isoform of the polypyrimidine tract binding protein (nPTB). PeerJ, 2, 2014
8AT6	Cryo-EM structure of yeast Elp456 subcomplex Descriptor: Elongator complex protein 4, Elongator complex protein 5, Elongator complex protein 6 Authors: Jaciuk, M, Scherf, D, Kaszuba, K, Gaik, M, Koscielniak, A, Krutyholowa, R, Rawski, M, Indyka, P, Biela, A, Dobosz, D, Lin, T.-Y, Abbassi, N, Hammermeister, A, Chramiec-Glabik, A, Kosinski, J, Schaffrath, R, Glatt, S. Deposit date: 2022-08-22 Release date: 2022-12-07 Last modified: 2023-03-29 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Cryo-EM structure of the fully assembled Elongator complex. Nucleic Acids Res., 51, 2023
8G5N	Cryo-EM structure of the Guide loop Engagement Complex (VI) of Human Mitochondrial DNA Polymerase Gamma Descriptor: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... Authors: Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. Deposit date: 2023-02-13 Release date: 2024-01-10 Method: ELECTRON MICROSCOPY (2.73 Å) Cite: Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5M	Cryo-EM structure of the Mismatch Locking Complex (III) of Human Mitochondrial DNA Polymerase Gamma Descriptor: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... Authors: Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. Deposit date: 2023-02-13 Release date: 2024-01-10 Method: ELECTRON MICROSCOPY (2.58 Å) Cite: Structural basis for DNA proofreading. Nat Commun, 14, 2023
8G5O	Cryo-EM structure of the Guide loop Engagement Complex (IV) of Human Mitochondrial DNA Polymerase Gamma Descriptor: DNA polymerase subunit gamma-1, DNA polymerase subunit gamma-2, mitochondrial, ... Authors: Nayak, A.R, Buchel, G, Herbine, K.H, Sarfallah, A, Sokolova, V.O, Zamudio-Ochoa, A, Temiakov, D. Deposit date: 2023-02-13 Release date: 2024-01-10 Method: ELECTRON MICROSCOPY (2.61 Å) Cite: Structural basis for DNA proofreading. Nat Commun, 14, 2023
7BEG	Structures of class I bacterial transcription complexes Descriptor: Class I pacrA promoter non-template DNA, Class I pacrA promoter template DNA, DNA-directed RNA polymerase subunit alpha, ... Authors: Ye, F.Z, Hao, M, Zhang, X.D. Deposit date: 2020-12-23 Release date: 2021-12-01 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structures of Class I and Class II Transcription Complexes Reveal the Molecular Basis of RamA-Dependent Transcription Activation. Adv Sci, 9, 2022
7BEF	Structures of class II bacterial transcription complexes Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Hao, M, Ye, F.Z, Zhang, X.D. Deposit date: 2020-12-23 Release date: 2021-12-01 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structures of Class I and Class II Transcription Complexes Reveal the Molecular Basis of RamA-Dependent Transcription Activation. Adv Sci, 9, 2022
6MRM	Red Clover Necrotic Mosaic Virus Descriptor: CALCIUM ION, Capsid protein Authors: Sherman, M.B, Smith, T.J. Deposit date: 2018-10-14 Release date: 2019-10-16 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Near-Atomic-Resolution Cryo-Electron Microscopy Structures of Cucumber Leaf Spot Virus and Red Clover Necrotic Mosaic Virus: Evolutionary Divergence at the Icosahedral Three-Fold Axes. J.Virol., 94, 2020
5JJI	Rho transcription termination factor bound to rU7 and 6 ADP-BeF3 molecules Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ... Authors: Thomsen, N.D, Lawson, M.R, Witkowsky, L.B, Qu, S, Berger, J.M. Deposit date: 2016-04-24 Release date: 2016-11-16 Last modified: 2019-12-25 Method: X-RAY DIFFRACTION (2.601 Å) Cite: Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
8BGJ	Crystal structure of Reverse Transcriptase domain from Caloramator australicus CART-CAPP Descriptor: L(+)-TARTARIC ACID, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ... Authors: Li, A.W.H, Doherty, A.J. Deposit date: 2022-10-27 Release date: 2023-06-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.63 Å) Cite: Reverse transcriptases prime DNA synthesis. Nucleic Acids Res., 51, 2023
2YKR	30S ribosomal subunit with RsgA bound in the presence of GMPPNP Descriptor: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... Authors: Guo, Q, Yuan, Y, Xu, Y, Feng, B, Liu, L, Chen, K, Lei, J, Gao, N. Deposit date: 2011-05-30 Release date: 2011-08-24 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (9.8 Å) Cite: Structural Basis for the Function of a Small Gtpase Rsga on the 30S Ribosomal Subunit Maturation Revealed by Cryoelectron Microscopy. Proc.Natl.Acad.Sci.USA, 108, 2011
5HHY	Structure of human Alanine:Glyoxylate Aminotransferase major allele (AGT-Ma) showing X-Ray induced reduction of PLP internal aldimine to 4'-deoxy-piridoxine-phosphate (PLR) Descriptor: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, Serine--pyruvate aminotransferase Authors: Giardina, G, Cutruzzola, F, Borri Voltattorni, C, Cellini, B, Montioli, R. Deposit date: 2016-01-11 Release date: 2017-01-25 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Radiation damage at the active site of human alanine:glyoxylate aminotransferase reveals that the cofactor position is finely tuned during catalysis. Sci Rep, 7, 2017
4FT2	crystal structure of Zea mays ZMET2 in complex H3(1-15)K9me2 peptide and SAH Descriptor: DNA (cytosine-5)-methyltransferase 1, H3 peptide, S-ADENOSYL-L-HOMOCYSTEINE Authors: Du, J, Patel, D.J. Deposit date: 2012-06-27 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Dual Binding of Chromomethylase Domains to H3K9me2-Containing Nucleosomes Directs DNA Methylation in Plants. Cell(Cambridge,Mass.), 151, 2012
7TBL	Composite structure of the human nuclear pore complex (NPC) cytoplasmic face generated with a 12A cryo-ET map of the purified HeLa cell NPC Descriptor: DDX19, ELYS, GLE1, ... Authors: Bley, C.J, Nie, S, Mobbs, G.W, Petrovic, S, Gres, A.T, Liu, X, Mukherjee, S, Harvey, S, Huber, F.M, Lin, D.H, Brown, B, Tang, A.W, Rundlet, E.J, Correia, A.R, Chen, S, Regmi, S.G, Stevens, T.A, Jette, C.A, Dasso, M, Patke, A, Palazzo, A.F, Kossiakoff, A.A, Hoelz, A. Deposit date: 2021-12-22 Release date: 2022-06-22 Last modified: 2022-06-29 Method: ELECTRON MICROSCOPY (23 Å) Cite: Architecture of the cytoplasmic face of the nuclear pore. Science, 376, 2022
6SN1	Crystal structure of the human INTS13-INTS14 complex Descriptor: Integrator complex subunit 13, Integrator complex subunit 14, SULFATE ION Authors: Jonas, S, Sabath, K, Staeubli, M.L. Deposit date: 2019-08-23 Release date: 2020-07-22 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.54 Å) Cite: INTS10-INTS13-INTS14 form a functional module of Integrator that binds nucleic acids and the cleavage module. Nat Commun, 11, 2020
1P5M	Solution Structure of HCV IRES Domain IIa Descriptor: 55-MER Authors: Lukavsky, P.J, Kim, I, Otto, G.A, Puglisi, J.D. Deposit date: 2003-04-27 Release date: 2003-11-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of HCV IRES domain II determined by NMR. Nat.Struct.Biol., 10, 2003
3MIA	Crystal structure of HIV-1 Tat complexed with ATP-bound human P-TEFb Descriptor: Cell division protein kinase 9, Cyclin-T1, MAGNESIUM ION, ... Authors: Tahirov, T.H, Babayeva, N.D, Varzavand, K, Cooper, J.J, Sedore, S.C, Price, D.H. Deposit date: 2010-04-09 Release date: 2010-06-09 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystal structure of HIV-1 Tat complexed with human P-TEFb. Nature, 465, 2010
7C97	Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA Descriptor: DNA (63-mer), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Lin, W, Feng, Y. Deposit date: 2020-06-05 Release date: 2020-08-12 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.68 Å) Cite: Structural basis for transcription inhibition by E. coli SspA Nucleic Acids Res., 2020
1P5P	Solution Structure of HCV IRES Domain II (minimized average structure) Descriptor: 77-MER Authors: Lukavsky, P.J, Kim, I, Otto, G.A, Puglisi, J.D. Deposit date: 2003-04-27 Release date: 2003-11-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of HCV IRES domain II determined by NMR. Nat.Struct.Biol., 10, 2003
7CHW	Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) Descriptor: DNA (63-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Lin, W, Feng, Y. Deposit date: 2020-07-06 Release date: 2020-08-12 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: Structural basis for transcription inhibition by E. coli SspA Nucleic Acids Res., 2020
6O90	Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class05 Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Jogl, G, Khayat, R. Deposit date: 2019-03-12 Release date: 2020-09-23 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Sci Rep, 10, 2020
6O8Z	Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04 Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Jogl, G, Khayat, R. Deposit date: 2019-03-12 Release date: 2020-09-16 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Cryo-electron microscopy structure of the 70S ribosome from Enterococcus faecalis. Sci Rep, 10, 2020
1P5O	Solution Structure of HCV IRES Domain II Descriptor: 77-MER Authors: Lukavsky, P.J, Kim, I, Otto, G.A, Puglisi, J.D. Deposit date: 2003-04-27 Release date: 2003-11-04 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of HCV IRES domain II determined by NMR. Nat.Struct.Biol., 10, 2003

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