Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6B7F
DownloadVisualize
BU of 6b7f by Molmil
Crystal structure of E.coli Phosphopantetheine Adenylyltransferase (PPAT/CoaD) in complex with (R)-3,3-dimethyl-4-(5-vinyl-1H-imidazol-1-yl)isochroman-1-one
Descriptor: (4R)-4-(5-ethenyl-1H-imidazol-1-yl)-3,3-dimethyl-3,4-dihydro-1H-2-benzopyran-1-one, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DIMETHYL SULFOXIDE, ...
Authors:Proudfoot, A.W, Bussiere, D, Lingel, A.
Deposit date:2017-10-03
Release date:2017-12-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.562 Å)
Cite:High-Confidence Protein-Ligand Complex Modeling by NMR-Guided Docking Enables Early Hit Optimization.
J. Am. Chem. Soc., 139, 2017
6TO0
DownloadVisualize
BU of 6to0 by Molmil
Structure of E70A mutant of Rex8A from Paenibacillus barcinonensis complexed with 2(3)-alpha-L-arabinofuranosyl-xylotriose.
Descriptor: GLYCEROL, Reducing-end xylose-releasing exo-oligoxylanase Rex8A, alpha-L-arabinofuranose-(1-2)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose
Authors:Jimenez-Ortega, E, Ramirez-Escudero, M, Sanz-Aparicio, J.
Deposit date:2019-12-11
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Structural analysis of the reducing-end xylose-releasing exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 deciphers its molecular specificity.
Febs J., 287, 2020
5MOJ
DownloadVisualize
BU of 5moj by Molmil
Crystal structure of IgE-Fc epsilon 3-4
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Ig epsilon chain C region, ...
Authors:Dore, K.A, Davies, A.M, Drinkwater, N, Beavil, A.J, MacDonnell, J.M, Sutton, B.J.
Deposit date:2016-12-14
Release date:2018-01-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.26 Å)
Cite:Thermal sensitivity and flexibility of the C epsilon 3 domains in immunoglobulin E.
Biochim. Biophys. Acta, 1865, 2017
1BXV
DownloadVisualize
BU of 1bxv by Molmil
REDUCED PLASTOCYANIN FROM SYNECHOCOCCUS SP.
Descriptor: COPPER (II) ION, PLASTOCYANIN
Authors:Inoue, T, Sugawara, H, Hamanaka, S, Tsukui, H, Suzuki, E, Kohzuma, T, Kai, Y.
Deposit date:1998-10-09
Release date:1999-06-15
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure determinations of oxidized and reduced plastocyanin from the cyanobacterium Synechococcus sp. PCC 7942.
Biochemistry, 38, 1999
7QFL
DownloadVisualize
BU of 7qfl by Molmil
Crystal structure of S-layer protein SlpA from Lactobacillus acidophilus, domain II (aa 199-308)
Descriptor: ACETATE ION, PHOSPHATE ION, S-layer protein
Authors:Sagmeister, T, Dordic, A, Eder, E, Pavkov-Keller, T.
Deposit date:2021-12-06
Release date:2022-12-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The molecular architecture of Lactobacillus S-layer: Assembly and attachment to teichoic acids.
Proc.Natl.Acad.Sci.USA, 121, 2024
6N1O
DownloadVisualize
BU of 6n1o by Molmil
Oxidized rat cytochrome c mutant (S47E)
Descriptor: 1,2-ETHANEDIOL, Cytochrome c, somatic, ...
Authors:Huttemann, M, Edwards, B.F.P.
Deposit date:2018-11-09
Release date:2019-10-23
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Serine-47 phosphorylation of cytochromecin the mammalian brain regulates cytochromecoxidase and caspase-3 activity.
Faseb J., 33, 2019
6TPP
DownloadVisualize
BU of 6tpp by Molmil
Structure of E70A mutant of Rex8A from Paenibacillus barcinonensis.
Descriptor: 1,2-ETHANEDIOL, Reducing-end xylose-releasing exo-oligoxylanase Rex8A
Authors:Jimenez-Ortega, E, Ramirez-Escudero, M, Sanz-Aparicio, J.
Deposit date:2019-12-13
Release date:2020-05-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Structural analysis of the reducing-end xylose-releasing exo-oligoxylanase Rex8A from Paenibacillus barcinonensis BP-23 deciphers its molecular specificity.
Febs J., 287, 2020
1FD7
DownloadVisualize
BU of 1fd7 by Molmil
HEAT-LABILE ENTEROTOXIN B-PENTAMER WITH BOUND LIGAND BMSC001
Descriptor: HEAT-LABILE ENTEROTOXIN B CHAIN, N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)-BENZAMIDE
Authors:Fan, E, Merritt, E.A, Pickens, J, Ahn, M, Hol, W.G.J.
Deposit date:2000-07-19
Release date:2000-08-10
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Exploration of the GM1 receptor-binding site of heat-labile enterotoxin and cholera toxin by phenyl-ring-containing galactose derivatives.
Acta Crystallogr.,Sect.D, 57, 2001
1BYB
DownloadVisualize
BU of 1byb by Molmil
CRYSTAL STRUCTURES OF SOYBEAN BETA-AMYLASE REACTED WITH BETA-MALTOSE AND MALTAL: ACTIVE SITE COMPONENTS AND THEIR APPARENT ROLE IN CATALYSIS
Descriptor: BETA-AMYLASE, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Mikami, B, Degano, M, Hehre, E.J, Sacchettini, J.C.
Deposit date:1994-01-25
Release date:1994-07-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structures of soybean beta-amylase reacted with beta-maltose and maltal: active site components and their apparent roles in catalysis.
Biochemistry, 33, 1994
1K3Y
DownloadVisualize
BU of 1k3y by Molmil
Crystal Structure Analysis of human Glutathione S-transferase with S-hexyl glutatione and glycerol at 1.3 Angstrom
Descriptor: GLUTATHIONE S-TRANSFERASE A1, GLYCEROL, S-HEXYLGLUTATHIONE
Authors:Le Trong, I, Stenkamp, R.E, Ibarra, C, Atkins, W.M, Adman, E.T.
Deposit date:2001-10-04
Release date:2002-10-30
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:1.3-A resolution structure of human glutathione S-transferase with S-hexyl glutathione bound reveals possible extended ligandin binding site.
Proteins, 48, 2002
6N5I
DownloadVisualize
BU of 6n5i by Molmil
FtsY-NG high-resolution
Descriptor: GLYCEROL, POTASSIUM ION, Signal recognition particle receptor FtsY
Authors:Ataide, S.F, Faoro, C.
Deposit date:2018-11-21
Release date:2019-10-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.498 Å)
Cite:Structural insights into the G-loop dynamics of E. coli FtsY NG domain.
J.Struct.Biol., 208, 2019
6TB5
DownloadVisualize
BU of 6tb5 by Molmil
The crystal structure of the DPS2 from DEINOCOCCUS RADIODURANS to 1.83A resolution (sequentially soaked in CaCl2 [5mM] for 20 min, then in Ammonium iron(II) sulfate [10mM] for 2h).
Descriptor: CALCIUM ION, DNA protection during starvation protein 2, FE (III) ION
Authors:Cuypers, M.G, McSweeney, S, Romao, C.V, Mitchell, E.P.
Deposit date:2019-10-31
Release date:2020-11-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:The crystal structure of the DPS2 from DEINOCOCCUS RADIODURANS to 1.83A resolution (sequentially soaked in CaCl2 [5mM] for 20 min, then in Ammonium iron(II) sulfate [10mM] for 2h).
To Be Published
2I5S
DownloadVisualize
BU of 2i5s by Molmil
Crystal structure of onconase with bound nucleic acid
Descriptor: 5'-D(*A*(DU)P*GP*A)-3', P-30 protein
Authors:Bae, E, Lee, J.E, Raines, R.T, Wesenberg, G.E, Phillips Jr, G.N, Bitto, E, Bingman, C.A, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-08-25
Release date:2006-09-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis for catalysis by onconase.
J.Mol.Biol., 375, 2008
3JY1
DownloadVisualize
BU of 3jy1 by Molmil
Bacillus cereus Alkylpurine DNA Glycosylase AlkD Bound to DNA Containing an Abasic Site (across from C)
Descriptor: DNA (5'-D(*AP*AP*AP*GP*CP*CP*CP*CP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*GP*(3DR)P*GP*GP*CP*TP*T)-3'), alkylpurine DNA glycosylase AlkD
Authors:Rubinson, E.H, Eichman, B.F.
Deposit date:2009-09-21
Release date:2010-09-22
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.754 Å)
Cite:An unprecedented nucleic acid capture mechanism for excision of DNA damage.
Nature, 468, 2010
6MRJ
DownloadVisualize
BU of 6mrj by Molmil
Crystal structure of H.pylori NikR in complex with DNA
Descriptor: DNA (36-MER), MAGNESIUM ION, NICKEL (II) ION, ...
Authors:Pozharski, E, de Serrano, V.
Deposit date:2018-10-13
Release date:2019-11-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of H.pylori NikR in complex with DNA
To Be Published
6TC4
DownloadVisualize
BU of 6tc4 by Molmil
AA13 Lytic polysaccharide monooxygenase from Aspergillus oryzae measured with SSX
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, AoAA13, CHLORIDE ION, ...
Authors:Tandrup, T, Muderspach, S.J, Frandsen, K.E.H, Santoni, G, Poulsen, J.C.N, Lo Leggio, L.
Deposit date:2019-11-05
Release date:2020-03-18
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Further structural studies of the lytic polysaccharide monooxygenase AoAA13 belonging to the starch-active AA13 family
Amylase, 3(1), 2019
3D28
DownloadVisualize
BU of 3d28 by Molmil
Crystal structure of hcv ns5b polymerase with a novel benzisothiazole inhibitor
Descriptor: (5S)-1-benzyl-3-(1,1-dioxido-1,2-benzisothiazol-3-yl)-4-hydroxy-5-(1-methylethyl)-1,5-dihydro-2H-pyrrol-2-one, RNA-directed RNA polymerase
Authors:Han, Q, Showalter, R.E, Zhao, Q, Kissinger, C.R.
Deposit date:2008-05-07
Release date:2009-05-19
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based design, synthesis, and biological evaluation of 1,1-dioxoisothiazole and benzo[b]thiophene-1,1-dioxide derivatives as novel inhibitors of hepatitis C virus NS5B polymerase.
Bioorg.Med.Chem.Lett., 18, 2008
6T8W
DownloadVisualize
BU of 6t8w by Molmil
Complement factor B in complex with (-)-4-(1-((5,7-Dimethyl-1H-indol-4-yl)methyl)piperidin-2-yl)benzoic acid
Descriptor: 5,7-dimethyl-4-[[(2~{S})-2-phenylpiperidin-1-yl]methyl]-1~{H}-indole, Complement factor B, SULFATE ION, ...
Authors:Mainolfi, N, Ehara, T, Karki, R.G, Anderson, K, Sweeney, A.M, Wiesmann, C, Adams, C, Mainolfi, N, Liao, S.M, Argikar, U.A, Jendza, K, Zhang, C, Powers, J, Klosowski, D.W, Crowley, M, Kawanami, T, Ding, J, April, M, Forster, C, Wu, M.S, Capparelli, M, Ramqaj, R, Solovay, C, Cumin, F, Smith, T.M, Ferrara, L, Lee, W, Long, D, Prentiss, M, Erkenez, A.D, Yang, L, Fang, L, Sellner, H, Sirockin, F, Valeur, E, Erbel, P, Ramage, P, Gerhartz, B, Schubart, A, Flohr, S, Gradoux, N, Feifel, R, Vogg, B, Wiesmann, C, Maibaum, J, Eder, J, Sedrani, R, Harrison, R.A, Mogi, M, Jaffee, B.D, Adams, C.M.
Deposit date:2019-10-25
Release date:2020-03-04
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Discovery of 4-((2S,4S)-4-Ethoxy-1-((5-methoxy-7-methyl-1H-indol-4-yl)methyl)piperidin-2-yl)benzoic Acid (LNP023), a Factor B Inhibitor Specifically Designed To Be Applicable to Treating a Diverse Array of Complement Mediated Diseases.
J.Med.Chem., 63, 2020
1KBW
DownloadVisualize
BU of 1kbw by Molmil
CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE
Descriptor: COPPER (II) ION, Major outer membrane protein PAN 1
Authors:Boulanger, M.J, Murphy, M.E.P.
Deposit date:2001-11-06
Release date:2001-12-05
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the soluble domain of the major anaerobically induced outer membrane protein (AniA) from pathogenic Neisseria: a new class of copper-containing nitrite reductases.
J.Mol.Biol., 315, 2002
2NAC
DownloadVisualize
BU of 2nac by Molmil
HIGH RESOLUTION STRUCTURES OF HOLO AND APO FORMATE DEHYDROGENASE
Descriptor: NAD-DEPENDENT FORMATE DEHYDROGENASE, SULFATE ION
Authors:Lamzin, V.S, Dauter, Z, Popov, V.O, Harutyunyan, E.H, Wilson, K.S.
Deposit date:1994-07-06
Release date:1995-01-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:High resolution structures of holo and apo formate dehydrogenase.
J.Mol.Biol., 236, 1994
6N9D
DownloadVisualize
BU of 6n9d by Molmil
Complex of tissue inhibitor of metalloproteinases-1 (TIMP-1) mutant (L34G/L133P/L151C/G154A) with matrix metalloproteinase-3 catalytic domain (MMP-3cd)
Descriptor: CALCIUM ION, Metalloproteinase inhibitor 1, Stromelysin-1, ...
Authors:Raeeszadeh-Sarmazdeh, M, Radisky, E.S, Sankaran, B.
Deposit date:2018-12-03
Release date:2019-05-15
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Directed evolution of the metalloproteinase inhibitor TIMP-1 reveals that its N- and C-terminal domains cooperate in matrix metalloproteinase recognition.
J.Biol.Chem., 294, 2019
2V5O
DownloadVisualize
BU of 2v5o by Molmil
STRUCTURE OF HUMAN IGF2R DOMAINS 11-14
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR, CHLORIDE ION
Authors:Brown, J, Delaine, C, Zaccheo, O.J, Siebold, C, Gilbert, R.J, van Boxel, G, Denley, A, Wallace, J.C, Hassan, A.B, Forbes, B.E, Jones, E.Y.
Deposit date:2007-07-06
Release date:2007-12-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:Structure and Functional Analysis of the Igf-II/Igf2R Interaction
Embo J., 27, 2008
5LGX
DownloadVisualize
BU of 5lgx by Molmil
Structure of Oxidised Pentaerythritol Tetranitrate Reductase
Descriptor: FLAVIN MONONUCLEOTIDE, ISOPROPYL ALCOHOL, Pentaerythritol tetranitrate reductase
Authors:Kwon, H, Smith, O.M, Moody, P.C.E.
Deposit date:2016-07-08
Release date:2017-02-15
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Combining X-ray and neutron crystallography with spectroscopy.
Acta Crystallogr D Struct Biol, 73, 2017
4GYI
DownloadVisualize
BU of 4gyi by Molmil
Crystal structure of the Rio2 kinase-ADP/Mg2+-phosphoaspartate complex from Chaetomium thermophilum
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ferreira-Cerca, S, Sagar, V, Schafer, T, Diop, M, Wesseling, A.M, Lu, H, Chai, E, Hurt, E, LaRonde-LeBlanc, N.
Deposit date:2012-09-05
Release date:2012-10-17
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:ATPase-dependent role of the atypical kinase Rio2 on the evolving pre-40S ribosomal subunit.
Nat.Struct.Mol.Biol., 19, 2012
5UI1
DownloadVisualize
BU of 5ui1 by Molmil
Crystal Structure of Human Protein Phosphatase 5C (PP5C) in complex with a triazole inhibitor
Descriptor: 5-phenyl-1H-1,2,3-triazole-4-carboxylic acid, MANGANESE (II) ION, Serine/threonine-protein phosphatase 5
Authors:Chattopadhyay, D, Swingle, M.R, Salter, E.A, Banerjee, S, Honkanen, R.E.
Deposit date:2017-01-12
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal Structure Human PP5C in Complex with an Inhibitor
To Be Published

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon