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7FBY
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BU of 7fby by Molmil
Crystal Structure of PH0140 from Pyrococcus horikosii OT3
Descriptor: 1,2-ETHANEDIOL, ISOLEUCINE, Transcriptional regulatory protein
Authors:Richard, M, Ahmad, M, Pal, R.K, Biswal, B.K, Jeyakanthan, J.
Deposit date:2021-07-13
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Crystal Structure of PH0140 from Pyrococcus horikosii OT3
To Be Published
3DKE
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BU of 3dke by Molmil
Polar and non-polar cavities in phage T4 lysozyme
Descriptor: 2-HYDROXYETHYL DISULFIDE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AZIDE ION, ...
Authors:Liu, L.J, Matthews, B.W.
Deposit date:2008-06-24
Release date:2008-11-25
Last modified:2021-10-20
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Use of experimental crystallographic phases to examine the hydration of polar and nonpolar cavities in T4 lysozyme
Proc.Natl.Acad.Sci.USA, 105, 2008
3DUX
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BU of 3dux by Molmil
Understanding Thrombin Inhibition
Descriptor: 3-cyclohexyl-D-alanyl-N-(3-chlorobenzyl)-L-prolinamide, Hirudin variant-1, SODIUM ION, ...
Authors:Baum, B, Heine, A, Klebe, G.
Deposit date:2008-07-18
Release date:2009-06-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Think twice: understanding the high potency of bis(phenyl)methane inhibitors of thrombin
J.Mol.Biol., 391, 2009
3DV7
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BU of 3dv7 by Molmil
Role of Hydrophilic Residues in Proton Transfer During Catalysis by Human Carbonic Anhydrase II (N62A)
Descriptor: Carbonic anhydrase 2, ZINC ION
Authors:Avvaru, B.S.
Deposit date:2008-07-18
Release date:2008-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Role of hydrophilic residues in proton transfer during catalysis by human carbonic anhydrase II.
Biochemistry, 47, 2008
1RJK
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BU of 1rjk by Molmil
crystal structure of the rat vitamin D receptor ligand binding domain complexed with 2MD and a synthetic peptide containing the NR2 box of DRIP 205
Descriptor: 5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-2-METHYLENE-CYCLOHEXANE-1,3-DIO L, Peroxisome proliferator-activated receptor binding protein, Vitamin D3 receptor
Authors:Vanhooke, J.L, Benning, M.M, Bauer, C.B, Pike, J.W, DeLuca, H.F.
Deposit date:2003-11-19
Release date:2004-04-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Molecular Structure of the Rat Vitamin D Receptor Ligand Binding Domain Complexed with 2-Carbon-Substituted Vitamin D(3) Hormone Analogues and a LXXLL-Containing Coactivator Peptide
Biochemistry, 43, 2004
1RNJ
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BU of 1rnj by Molmil
Crystal structure of inactive mutant dUTPase complexed with substrate analogue imido-dUTP
Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Deoxyuridine 5'-triphosphate nucleotidohydrolase, ...
Authors:Barabas, O, Pongracz, V, Kovari, J, Wilmanns, M, Vertessy, B.G.
Deposit date:2003-12-01
Release date:2004-09-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insights into the Catalytic Mechanism of Phosphate Ester Hydrolysis by dUTPase.
J.Biol.Chem., 279, 2004
7FCR
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BU of 7fcr by Molmil
Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
Descriptor: Apolipoprotein E, SODIUM ION
Authors:Cherakara, S, Kumar, A, Garai, K, Ghosh, B.
Deposit date:2021-07-15
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
To be published
8CQX
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BU of 8cqx by Molmil
Ribokinase from T.sp mutant A92G
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribokinase
Authors:Timofeev, V.I, Shevtsov, M.B, Abramchik, Y.A, Kostromina, M.A, Zayats, E.A, Kuranova, I.P, Esipov, R.S.
Deposit date:2023-03-07
Release date:2023-04-05
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Ribokinase from T.sp mutant A92G
To Be Published
7LBA
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BU of 7lba by Molmil
E. coli Agmatinase
Descriptor: Agmatinase, MANGANESE (II) ION
Authors:Chitrakar, I, Ahmed, S.F, Torelli, A.T, French, J.B.
Deposit date:2021-01-07
Release date:2021-03-31
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of the E. coli agmatinase, SPEB.
Plos One, 16, 2021
7FCS
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BU of 7fcs by Molmil
Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
Descriptor: Apolipoprotein E, SODIUM ION
Authors:Cherakara, S, Kumar, A, Garai, K, Ghosh, B.
Deposit date:2021-07-15
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the N-terminal domain of mutants of Human Apolipoprotein-E (ApoE)
To be published
3DNA
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BU of 3dna by Molmil
Iodobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant (seleno version)
Descriptor: 2-HYDROXYETHYL DISULFIDE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
Authors:Liu, L, Matthews, B.W.
Deposit date:2008-07-01
Release date:2008-11-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
7FCY
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BU of 7fcy by Molmil
Crystal structure of M.tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
Descriptor: (1S)-2-methyl-1-(2-methyl-1,2,4-triazol-3-yl)propan-1-amine, 1,2-ETHANEDIOL, ACETATE ION, ...
Authors:Tiwari, S, Pal, R.K, Biswal, B.K.
Deposit date:2021-07-15
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.848 Å)
Cite:Crystal structure of M.tuberculosis imidazole glycerol phosphate dehydratase in complex with an inhibitor
To Be Published
6RBL
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BU of 6rbl by Molmil
TETR(D) E147A MUTANT IN COMPLEX WITH DOXYCYCLINE AND MAGNESIUM
Descriptor: (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Hinrichs, W, Palm, G.J, Berndt, L, Girbardt, B.
Deposit date:2019-04-10
Release date:2019-08-21
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Thermodynamics, cooperativity and stability of the tetracycline repressor (TetR) upon tetracycline binding.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
7FDO
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BU of 7fdo by Molmil
Crystal structure of transcription factor CPC in complex with EGL3
Descriptor: CHLORIDE ION, SULFATE ION, Transcription factor CPC, ...
Authors:Wang, B, Luo, Q.
Deposit date:2021-07-17
Release date:2022-07-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.752 Å)
Cite:Structural insights into partner selection for MYB and bHLH transcription factor complexes.
Nat.Plants, 8, 2021
5BS0
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BU of 5bs0 by Molmil
MAGE-A3 Reactive TCR in complex with Titin Epitope in HLA-A1
Descriptor: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
Authors:Raman, M.C.C, Rizkallah, P.J, Simmons, R, Donellan, Z, Dukes, J, Bossi, G, LeProvost, G, Mahon, T, Hickman, E, Lomax, M, Oates, J, Hassan, N, Vuidepot, A, Sami, M, Cole, D.K, Jakobsen, B.K.
Deposit date:2015-06-01
Release date:2016-03-02
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Direct molecular mimicry enables off-target cardiovascular toxicity by an enhanced affinity TCR designed for cancer immunotherapy.
Sci Rep, 6, 2016
3DRM
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BU of 3drm by Molmil
2.2 Angstrom Crystal Structure of Thr114Phe Alpha1-Antitrypsin
Descriptor: Alpha-1-antitrypsin
Authors:Gooptu, B, Nobeli, I, Purkiss, A, Phillips, R.L, Mallya, M, Lomas, D.A, Barrett, T.E.
Deposit date:2008-07-11
Release date:2009-03-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystallographic and cellular characterisation of two mechanisms stabilising the native fold of alpha1-antitrypsin: implications for disease and drug design.
J.Mol.Biol., 387, 2009
2OJX
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BU of 2ojx by Molmil
Molecular and structural basis of polo-like kinase 1 substrate recognition: Implications in centrosomal localization
Descriptor: Serine/threonine-protein kinase PLK1, Synthetic peptide
Authors:Garcia-Alvarez, B, de Carcer, G, Ibanez, S, Bragado-Nilsson, E, Montoya, G.
Deposit date:2007-01-15
Release date:2007-02-13
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Molecular and structural basis of polo-like kinase 1 substrate recognition: Implications in centrosomal localization.
Proc.Natl.Acad.Sci.Usa, 104, 2007
7LHN
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BU of 7lhn by Molmil
Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A mutant of cellular retinol binding protein II complex with all-trans-retinal after exposure to visible light
Descriptor: GLYCEROL, RETINAL, Retinol-binding protein 2
Authors:Ehyaei, N, Geiger, J.H, Borhan, B.
Deposit date:2021-01-25
Release date:2021-04-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A mutant of cellular retinol binding protein II complex with all-trans-retinal after exposure to visible light
To Be Published
2OED
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BU of 2oed by Molmil
GB3 solution structure obtained by refinement of X-ray structure with dipolar couplings
Descriptor: Immunoglobulin G-binding protein G
Authors:Ulmer, T.S, Ramirez, B.E, Delaglio, F, Bax, A, Grishaev, A.
Deposit date:2006-12-29
Release date:2007-01-30
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy
J.Am.Chem.Soc., 125, 2003
3DIK
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BU of 3dik by Molmil
Pseudo-atomic model of the HIV-1 CA hexameric lattice
Descriptor: Capsid protein p24
Authors:Ganser-Pornillos, B.K, Cheng, A, Yeager, M.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2024-02-21
Method:ELECTRON CRYSTALLOGRAPHY (9 Å)
Cite:Structure of full-length HIV-1 CA: a model for the mature capsid lattice
Cell(Cambridge,Mass.), 131, 2007
5I9J
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BU of 5i9j by Molmil
Structure of the cholesterol and lutein-binding domain of human STARD3 at 1.74A
Descriptor: 1,2-ETHANEDIOL, L(+)-TARTARIC ACID, SULFATE ION, ...
Authors:Horvath, M.P, Bernstein, P.S, Li, B, George, E.W, Tran, Q.T.
Deposit date:2016-02-20
Release date:2016-03-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure of the lutein-binding domain of human StARD3 at 1.74 angstrom resolution and model of a complex with lutein.
Acta Crystallogr.,Sect.F, 72, 2016
7LHM
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BU of 7lhm by Molmil
Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A:Q38L mutant of cellular retinol binding protein II complex with all-trans-retinal
Descriptor: ACETATE ION, GLYCEROL, RETINAL, ...
Authors:Ehyaei, N, Geiger, J.H, Borhan, B.
Deposit date:2021-01-25
Release date:2021-04-14
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A:Q38L mutant of cellular retinol binding protein II complex with all-trans-retinal
To Be Published
7LHO
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BU of 7lho by Molmil
Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A mutant of cellular retinol binding protein II complex with all-trans-retinal in the dark
Descriptor: GLYCEROL, RETINAL, Retinol-binding protein 2
Authors:Ehyaei, N, Geiger, J.H, Borhan, B.
Deposit date:2021-01-26
Release date:2021-04-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A mutant of cellular retinol binding protein II complex with all-trans-retinal in the dark
To Be Published
2O4E
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BU of 2o4e by Molmil
The solution structure of a protein-protein interaction module from a family 84 glycoside hydrolase of Clostridium perfringens
Descriptor: O-GlcNAcase nagJ
Authors:Chitayat, S, Adams, J.J, Gregg, K, Boraston, A.B, Smith, S.P.
Deposit date:2006-12-04
Release date:2007-11-06
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Three-dimensional structure of a putative non-cellulosomal cohesin module from a Clostridium perfringens family 84 glycoside hydrolase.
J.Mol.Biol., 375, 2008
6R81
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BU of 6r81 by Molmil
Multidrug resistance transporter BmrA mutant E504A bound with ATP and Mg solved by Cryo-EM
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Lipid A export ATP-binding/permease protein MsbA, MAGNESIUM ION
Authors:Wiseman, B, Chaptal, V, Zampieri, V, Magnard, S, Hogbom, M, Falson, P.
Deposit date:2019-03-30
Release date:2020-05-06
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Substrate-bound and substrate-free outward-facing structures of a multidrug ABC exporter.
Sci Adv, 8, 2022

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