Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5YHX
DownloadVisualize
BU of 5yhx by Molmil
Structure of Lactococcus lactis ZitR, wild type
Descriptor: ZINC ION, Zinc transport transcriptional regulator
Authors:Song, Y, Liu, H, Zhu, R, Yi, C, Chen, P.
Deposit date:2017-10-01
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation.
Proc.Natl.Acad.Sci.USA, 114, 2017
5YI0
DownloadVisualize
BU of 5yi0 by Molmil
Structure of Lactococcus lactis ZitR, C30AH42A mutant
Descriptor: ZINC ION, Zinc transport transcriptional regulator
Authors:Song, Y, Liu, H, Zhu, R, Yi, C, Chen, P.
Deposit date:2017-10-01
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation.
Proc.Natl.Acad.Sci.USA, 114, 2017
5YI1
DownloadVisualize
BU of 5yi1 by Molmil
Structure of Lactococcus lactis ZitR, C30AH42A mutant in apo form
Descriptor: Zinc transport transcriptional regulator
Authors:Song, Y, Liu, H, Zhu, R, Yi, C, Chen, P.
Deposit date:2017-10-01
Release date:2017-12-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation.
Proc.Natl.Acad.Sci.USA, 114, 2017
5FXY
DownloadVisualize
BU of 5fxy by Molmil
Structure of the human RBBP4:MTA1(464-546) complex
Descriptor: HISTONE-BINDING PROTEIN RBBP4, METASTASIS-ASSOCIATED PROTEIN MTA1
Authors:Millard, C.J, Varma, N, Fairall, L, Schwabe, J.W.R.
Deposit date:2016-03-03
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The structure of the core NuRD repression complex provides insights into its interaction with chromatin.
Elife, 5, 2016
6N0R
DownloadVisualize
BU of 6n0r by Molmil
Crystal structure of Tdp1 catalytic domain in complex with compound XZ572
Descriptor: 1,2-ETHANEDIOL, 4-(methylamino)benzene-1,2-dicarboxylic acid, DIMETHYL SULFOXIDE, ...
Authors:Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S.
Deposit date:2018-11-07
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.544 Å)
Cite:Crystal structure of Tdp1 catalytic domain
To Be Published
6N0D
DownloadVisualize
BU of 6n0d by Molmil
Crystal structure of Tdp1 catalytic domain in complex with compound XZ575
Descriptor: 1,2-ETHANEDIOL, 4-fluorobenzene-1,2-dicarboxylic acid, Tyrosyl-DNA phosphodiesterase 1
Authors:Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S.
Deposit date:2018-11-07
Release date:2019-11-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.453 Å)
Cite:Crystal structure of Tdp1 catalytic domain in complex with compound XZ575
To Be Published
7KTR
DownloadVisualize
BU of 7ktr by Molmil
Cryo-EM structure of the human SAGA coactivator complex (TRRAP, core)
Descriptor: Ataxin-7, INOSITOL HEXAKISPHOSPHATE, Isoform 3 of Transcription factor SPT20 homolog, ...
Authors:Herbst, D.A, Esbin, M.N, Nogales, E.
Deposit date:2020-11-24
Release date:2021-11-10
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (2.93 Å)
Cite:Structure of the human SAGA coactivator complex.
Nat.Struct.Mol.Biol., 28, 2021
7KTS
DownloadVisualize
BU of 7kts by Molmil
Negative stain EM structure of the human SAGA coactivator complex (TRRAP, core, splicing module)
Descriptor: Ataxin-7, Isoform 3 of Transcription factor SPT20 homolog, STAGA complex 65 subunit gamma, ...
Authors:Herbst, D.A, Esbin, M.N, Nogales, E.
Deposit date:2020-11-24
Release date:2021-11-10
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (19.09 Å)
Cite:Structure of the human SAGA coactivator complex.
Nat.Struct.Mol.Biol., 28, 2021
2JX3
DownloadVisualize
BU of 2jx3 by Molmil
NMR solution structure of the N-terminal domain of DEK
Descriptor: Protein DEK
Authors:Matsuo, H, Devany, M.
Deposit date:2007-11-02
Release date:2008-02-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution NMR structure of the N-terminal domain of the human DEK protein
Protein Sci., 17, 2008
5CYV
DownloadVisualize
BU of 5cyv by Molmil
Crystal structure of CouR from Rhodococcus jostii RHA1 bound to p-coumaroyl-CoA
Descriptor: ACETATE ION, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Stogios, P.J, Xu, X, Dong, A, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2015-07-30
Release date:2015-08-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:The activity of CouR, a MarR family transcriptional regulator, is modulated through a novel molecular mechanism.
Nucleic Acids Res., 44, 2016
7O9K
DownloadVisualize
BU of 7o9k by Molmil
Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu
Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ...
Authors:Valentin Gese, G, Hallberg, B.M.
Deposit date:2021-04-16
Release date:2021-06-30
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural basis for late maturation steps of the human mitoribosomal large subunit.
Nat Commun, 12, 2021
6N0N
DownloadVisualize
BU of 6n0n by Molmil
Crystal structure of Tdp1 catalytic domain in complex with compound XZ574
Descriptor: 1,2-ETHANEDIOL, 4-methylbenzene-1,2-dicarboxylic acid, DIMETHYL SULFOXIDE, ...
Authors:Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S.
Deposit date:2018-11-07
Release date:2019-11-13
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.477 Å)
Cite:Crystal structure of Tdp1 catalytic domain
To Be Published
6RMQ
DownloadVisualize
BU of 6rmq by Molmil
Crystal structure of a selenomethionine-substituted A70M I84M mutant of the essential repressor DdrO from radiation resistant-Deinococcus bacteria (Deinococcus deserti)
Descriptor: HTH-type transcriptional regulator DdrOC
Authors:Arnoux, P, Siponen, M.I, Pignol, D, De Groot, A, Blanchard, L.
Deposit date:2019-05-07
Release date:2019-10-09
Last modified:2019-12-04
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure of the transcriptional repressor DdrO: insight into the metalloprotease/repressor-controlled radiation response in Deinococcus.
Nucleic Acids Res., 47, 2019
2YAL
DownloadVisualize
BU of 2yal by Molmil
SinR, Master Regulator of biofilm formation in Bacillus subtilis
Descriptor: HTH-TYPE TRANSCRIPTIONAL REGULATOR SINR, NICKEL (II) ION
Authors:Colledge, V.L, Fogg, M.J, Levdikov, V.M, Leech, A, Dodson, E.J, Wilkinson, A.J.
Deposit date:2011-02-23
Release date:2011-06-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Structure and Organisation of Sinr, the Master Regulator of Biofilm Formation in Bacillus Subtilis.
J.Mol.Biol., 411, 2011
7UD5
DownloadVisualize
BU of 7ud5 by Molmil
Complex between MLL1-WRAD and an H2B-ubiquitinated nucleosome
Descriptor: 601 DNA (146-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Niklas, H.A, Rahman, S, Worden, E.J, Wolberger, C.
Deposit date:2022-03-18
Release date:2022-09-21
Last modified:2022-10-05
Method:ELECTRON MICROSCOPY (4.25 Å)
Cite:Multistate structures of the MLL1-WRAD complex bound to H2B-ubiquitinated nucleosome.
Proc.Natl.Acad.Sci.USA, 119, 2022
1B0N
DownloadVisualize
BU of 1b0n by Molmil
SINR PROTEIN/SINI PROTEIN COMPLEX
Descriptor: PROTEIN (SINI PROTEIN), PROTEIN (SINR PROTEIN), ZINC ION
Authors:Lewis, R.J, Brannigan, J.A, Offen, W.A, Smith, I, Wilkinson, A.J.
Deposit date:1998-11-11
Release date:1999-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:An evolutionary link between sporulation and prophage induction in the structure of a repressor:anti-repressor complex.
J.Mol.Biol., 283, 1998
5OEM
DownloadVisualize
BU of 5oem by Molmil
Crystal Structure of Interferon Regulatory Factor 9 IAD Domain
Descriptor: Interferon regulatory factor 9, PHOSPHATE ION
Authors:Rengachari, S, Panne, D.
Deposit date:2017-07-09
Release date:2018-01-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural basis of STAT2 recognition by IRF9 reveals molecular insights into ISGF3 function.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
1LNW
DownloadVisualize
BU of 1lnw by Molmil
CRYSTAL STRUCTURE OF THE MEXR REPRESSOR OF THE MEXAB-OPRM MULTIDRUG EFFLUX OPERON OF PSEUDOMONAS AERUGINOSA
Descriptor: Multidrug resistance operon repressor
Authors:Lim, D.C, Poole, K, Strynadka, N.C.J.
Deposit date:2002-05-03
Release date:2002-09-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the MexR repressor of the mexRAB-oprM multidrug efflux operon of Pseudomonas aeruginosa.
J.Biol.Chem., 277, 2002
2DI3
DownloadVisualize
BU of 2di3 by Molmil
Crystal structure of the transcriptional factor CGL2915 from Corynebacterium glutamicum
Descriptor: Bacterial regulatory proteins, GntR family, ZINC ION
Authors:Gao, Y.G, Yao, M, Tanaka, I.
Deposit date:2006-03-28
Release date:2007-03-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in L-lactate and sugar utilization
Nucleic Acids Res., 36, 2008
4NQW
DownloadVisualize
BU of 4nqw by Molmil
Structure of Mycobacterium tuberculosis extracytoplasmic function sigma factor SigK in complex with the cytosolic domain of its cognate anti-sigma factor RskA
Descriptor: Anti-sigma-K factor RskA, CADMIUM ION, ECF RNA polymerase sigma factor SigK
Authors:Shukla, J.K, Gopal, B.
Deposit date:2013-11-25
Release date:2014-01-22
Last modified:2014-04-16
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for the redox sensitivity of the Mycobacterium tuberculosis SigK-RskA sigma-anti-sigma complex
Acta Crystallogr.,Sect.D, 70, 2014
4ZIA
DownloadVisualize
BU of 4zia by Molmil
Crystal Structure of STAT3 N-terminal domain
Descriptor: FORMIC ACID, MAGNESIUM ION, NICKEL (II) ION, ...
Authors:Hu, T, Chopra, R.
Deposit date:2015-04-28
Release date:2015-07-29
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Impact of the N-Terminal Domain of STAT3 in STAT3-Dependent Transcriptional Activity.
Mol.Cell.Biol., 35, 2015
6FPM
DownloadVisualize
BU of 6fpm by Molmil
TetR(D) T103A mutant in complex with tetracycline and magnesium
Descriptor: CHLORIDE ION, MAGNESIUM ION, TETRACYCLINE, ...
Authors:Hinrichs, W, Palm, G.J, Berndt, L, Girbardt, B.
Deposit date:2018-02-11
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Thermodynamics, cooperativity and stability of the tetracycline repressor (TetR) upon tetracycline binding.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
6FPL
DownloadVisualize
BU of 6fpl by Molmil
TETR(D) E147A MUTANT IN COMPLEX WITH TETRACYCLINE AND MAGNESIUM
Descriptor: CHLORIDE ION, MAGNESIUM ION, TETRACYCLINE, ...
Authors:Hinrichs, W, Palm, G.J, Berndt, L, Girbardt, B.
Deposit date:2018-02-11
Release date:2019-03-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.602 Å)
Cite:Thermodynamics, cooperativity and stability of the tetracycline repressor (TetR) upon tetracycline binding.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
6FTS
DownloadVisualize
BU of 6fts by Molmil
TETR(D) N82A MUTANT IN COMPLEX WITH PEG4
Descriptor: CHLORIDE ION, TETRAETHYLENE GLYCOL, Tetracycline repressor protein class D
Authors:Hinrichs, W, Palm, G.J, Berndt, L, Girbardt, B.
Deposit date:2018-02-23
Release date:2019-02-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Thermodynamics, cooperativity and stability of the tetracycline repressor (TetR) upon tetracycline binding.
Biochim Biophys Acta Proteins Proteom, 1868, 2020
6WWA
DownloadVisualize
BU of 6wwa by Molmil
Crystal structure of human SHLD2-SHLD3-REV7 complex
Descriptor: Mitotic spindle assembly checkpoint protein MAD2B, Shieldin complex subunit 2,Shieldin complex subunit 3 chimera
Authors:Xie, W, Patel, D.J.
Deposit date:2020-05-08
Release date:2021-03-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Molecular mechanisms of assembly and TRIP13-mediated remodeling of the human Shieldin complex.
Proc.Natl.Acad.Sci.USA, 118, 2021

225946

PDB entries from 2024-10-09

PDB statisticsPDBj update infoContact PDBjnumon