Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YNT
DownloadVisualize
BU of 4ynt by Molmil
Crystal structure of Aspergillus flavus FAD glucose dehydrogenase
Descriptor: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, Glucose oxidase, putative
Authors:Yoshida, H, Sakai, G, Kojima, K, Kamitori, S, Sode, K.
Deposit date:2015-03-11
Release date:2015-09-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural analysis of fungus-derived FAD glucose dehydrogenase
Sci Rep, 5, 2015
4O9U
DownloadVisualize
BU of 4o9u by Molmil
Mechanism of transhydrogenase coupling proton translocation and hydride transfer
Descriptor: NAD(P) transhydrogenase subunit alpha 2, NAD(P) transhydrogenase subunit beta, NAD/NADP transhydrogenase alpha subunit 1, ...
Authors:Leung, J.H, Yamaguchi, M, Moeller, A, Schurig-Briccio, L.A, Gennis, R.B, Potter, C.S, Carragher, B, Stout, C.D.
Deposit date:2014-01-02
Release date:2015-01-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (6.926 Å)
Cite:Structural biology. Division of labor in transhydrogenase by alternating proton translocation and hydride transfer.
Science, 347, 2015
4OAP
DownloadVisualize
BU of 4oap by Molmil
An Axe2 mutant (W190I), an acetyl-xylooligosaccharide esterase from Geobacillus Stearmophilus
Descriptor: ACETATE ION, Acetyl xylan esterase, CHLORIDE ION, ...
Authors:Lansky, S, Alalouf, O, Solomon, H.V, Belrhali, H, Shoham, Y, Shoham, G.
Deposit date:2014-01-06
Release date:2015-01-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:An Axe2 mutant (W190I), an acetyl-xylooligosaccharide esterase from Geobacillus Stearmophilus
To be Published
4YNA
DownloadVisualize
BU of 4yna by Molmil
Oxidized YfiR
Descriptor: SULFATE ION, YfiR
Authors:Xu, M, Jiang, T.
Deposit date:2015-03-09
Release date:2015-04-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of YfiR from Pseudomonas aeruginosa in two redox states
Biochem.Biophys.Res.Commun., 461, 2015
4OWF
DownloadVisualize
BU of 4owf by Molmil
Crystal structure of the NEMO CoZi in complex with HOIP NZF1 domain
Descriptor: E3 ubiquitin-protein ligase RNF31, NF-kappa-B essential modulator, ZINC ION
Authors:Rahighi, S, Fujita, H, Kawasaki, M, Kato, R, Iwai, K, Wakatsuki, S.
Deposit date:2014-01-31
Release date:2014-02-12
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Mechanism Underlying I kappa B Kinase Activation Mediated by the Linear Ubiquitin Chain Assembly Complex.
Mol.Cell.Biol., 34, 2014
4YP7
DownloadVisualize
BU of 4yp7 by Molmil
Crystal structure of Methanobacterium thermoautotrophicum NMNAT in complex with NADP
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Nicotinamide-nucleotide adenylyltransferase
Authors:Pfoh, R, Christendat, D, Pai, E.F, Saridakis, V.
Deposit date:2015-03-12
Release date:2015-10-14
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Nicotinamide mononucleotide adenylyltransferase displays alternate binding modes for nicotinamide nucleotides.
Acta Crystallogr. D Biol. Crystallogr., 71, 2015
4OBJ
DownloadVisualize
BU of 4obj by Molmil
Crystal Structure of Inactive HIV-1 Protease in Complex with the p1-p6 substrate variant (S451N)
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, GLYCEROL, ...
Authors:Kolli, M.
Deposit date:2014-01-07
Release date:2014-11-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:HIV-1 protease-substrate coevolution in nelfinavir resistance.
J.Virol., 88, 2014
4OWQ
DownloadVisualize
BU of 4owq by Molmil
Anthranilate phosphoribosyl transferase from Mycobacterium tuberculosis in complex with 3-methylanthranilate, PRPP and Magnesium
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 2-azanyl-3-methyl-benzoic acid, Anthranilate phosphoribosyltransferase, ...
Authors:Castell, A, Cookson, T.V.M, Short, F.L, Lott, J.S.
Deposit date:2014-02-03
Release date:2014-04-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Alternative substrates reveal catalytic cycle and key binding events in the reaction catalysed by anthranilate phosphoribosyltransferase from Mycobacterium tuberculosis.
Biochem.J., 461, 2014
4OBW
DownloadVisualize
BU of 4obw by Molmil
crystal structure of yeast Coq5 in the SAM bound form
Descriptor: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, S-ADENOSYLMETHIONINE, ...
Authors:Dai, Y.N, Zhou, K, Cao, D.D, Jiang, Y.L, Meng, F, Chi, C.B, Ren, Y.M, Chen, Y.X, Zhou, C.Z.
Deposit date:2014-01-07
Release date:2014-08-06
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures and catalytic mechanism of the C-methyltransferase Coq5 provide insights into a key step of the yeast coenzyme Q synthesis pathway.
Acta Crystallogr.,Sect.D, 70, 2014
4YPU
DownloadVisualize
BU of 4ypu by Molmil
ASH1L SET domain K2264L mutant in complex with S-adenosyl methionine (SAM)
Descriptor: Histone-lysine N-methyltransferase ASH1L, S-ADENOSYLMETHIONINE, ZINC ION
Authors:Rogawski, D.S, Ndoj, J, Cho, H.J, Maillard, I, Grembecka, J, Cierpicki, T.
Deposit date:2015-03-13
Release date:2015-09-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Two Loops Undergoing Concerted Dynamics Regulate the Activity of the ASH1L Histone Methyltransferase.
Biochemistry, 54, 2015
4OCJ
DownloadVisualize
BU of 4ocj by Molmil
N-acetylhexosamine 1-phosphate kinase in complex with GlcNAc
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, N-acetylhexosamine 1-phosphate kinase, SODIUM ION
Authors:Li, T.L, Wang, K.C, Lyu, S.Y, Liu, Y.C, Chang, C.Y, Wu, C.J.
Deposit date:2014-01-09
Release date:2014-05-14
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.571 Å)
Cite:Insights into the binding specificity and catalytic mechanism of N-acetylhexosamine 1-phosphate kinases through multiple reaction complexes.
Acta Crystallogr.,Sect.D, 70, 2014
4OCU
DownloadVisualize
BU of 4ocu by Molmil
N-acetylhexosamine 1-phosphate kinase_ATCC15697 in complex with GlcNAc
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, N-acetylhexosamine 1-phosphate kinase, SULFATE ION
Authors:Li, T.L, Wang, K.C, Lyu, S.Y, Liu, Y.C, Chang, C.Y, Wu, C.J.
Deposit date:2014-01-09
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.904 Å)
Cite:Insights into the binding specificity and catalytic mechanism of N-acetylhexosamine 1-phosphate kinases through multiple reaction complexes.
Acta Crystallogr.,Sect.D, 70, 2014
4OYL
DownloadVisualize
BU of 4oyl by Molmil
Humicola insolens cutinase in complex with mono-ethylphosphate
Descriptor: Cutinase
Authors:Dauter, Z.D, Brzozowski, A.M, Turkenburg, J.P, Wilson, K.S.
Deposit date:2014-02-12
Release date:2014-06-25
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Thermodynamic and structural investigation of the specific SDS binding of Humicola insolens cutinase.
Protein Sci., 23, 2014
4OD0
DownloadVisualize
BU of 4od0 by Molmil
Crystal structure of human soluble epoxide hydrolase complexed with 1-(1-propanoylpiperidin-4-yl)-3-[4-(trifluoromethoxy)phenyl]urea
Descriptor: 1-(1-propanoylpiperidin-4-yl)-3-[4-(trifluoromethoxy)phenyl]urea, Bifunctional epoxide hydrolase 2, MAGNESIUM ION, ...
Authors:Lee, K.S.S, Liu, J, Wagner, K.M, Pakhomova, S, Dong, H, Morisseau, C, Fu, S.H, Yang, J, Wang, P, Ulu, A, Mate, C, Nguyen, L, Wullf, H, Eldin, M.L, Mara, A.A, Newcomer, M.E, Zeldin, D.C, Hammock, B.D.
Deposit date:2014-01-09
Release date:2014-09-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.92 Å)
Cite:Optimized inhibitors of soluble epoxide hydrolase improve in vitro target residence time and in vivo efficacy.
J.Med.Chem., 57, 2014
4ODG
DownloadVisualize
BU of 4odg by Molmil
Crystal structure of Staphylococcal nuclease variant V23I/V66I/V74I/V99I at cryogenic temperature
Descriptor: CALCIUM ION, PHOSPHATE ION, THYMIDINE-3',5'-DIPHOSPHATE, ...
Authors:Caro, J.A, Schlessman, J.L, Heroux, A, Garcia-Moreno E, B.
Deposit date:2014-01-10
Release date:2014-01-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Pressure effects in proteins
To be Published
4OJP
DownloadVisualize
BU of 4ojp by Molmil
Crystal Structure of Putative Tailspike Protein (TSP1, orf210) from Escherichia coli O157:H7 Bacteriohage CBA120 in Complex with Maltose
Descriptor: Tailspike protein, ZINC ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Chen, C, Herzberg, O.
Deposit date:2014-01-21
Release date:2014-03-26
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.948 Å)
Cite:Crystal structure of ORF210 from E. coli O157:H1 phage CBA120 (TSP1), a putative tailspike protein.
Plos One, 9, 2014
4ODW
DownloadVisualize
BU of 4odw by Molmil
Unliganded Fab structure of lipid A-specific antibody A6
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, A6 Fab (IgG2b kappa) light chain, A6 Fab (IgG2b) heavy chain
Authors:Haji-Ghassemi, O, Evans, S.V.
Deposit date:2014-01-10
Release date:2015-06-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA.
J.Biol.Chem., 290, 2015
4YR9
DownloadVisualize
BU of 4yr9 by Molmil
mouse TDH with NAD+ bound
Descriptor: GLYCEROL, L-threonine 3-dehydrogenase, mitochondrial, ...
Authors:He, C, Li, F.
Deposit date:2015-03-14
Release date:2016-02-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights on mouse l-threonine dehydrogenase: A regulatory role of Arg180 in catalysis
J.Struct.Biol., 192, 2015
4OFT
DownloadVisualize
BU of 4oft by Molmil
C- Orthorombic NaGST1
Descriptor: Glutathione S-transferase-1
Authors:Asojo, O.A.
Deposit date:2014-01-15
Release date:2014-12-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of glutathione S-transferase 1 from the major human hookworm parasite Necator americanus (Na-GST-1) in complex with glutathione.
Acta Crystallogr F Struct Biol Commun, 70, 2014
4YSU
DownloadVisualize
BU of 4ysu by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 25.0 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4OG4
DownloadVisualize
BU of 4og4 by Molmil
Human menin with bound inhibitor MIV-3S
Descriptor: 4-(3-{4-[(S)-cyclopentyl(hydroxy)phenylmethyl]piperidin-1-yl}propoxy)benzonitrile, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:He, S, Senter, T.J, Pollock, J.W, Han, C, Upadhyay, S.K, Purohit, T, Gogliotti, R.D, Lindsley, C.W, Cierpicki, T, Stauffer, S.R, Grembecka, J.
Deposit date:2014-01-15
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:High-Affinity Small-Molecule Inhibitors of the Menin-Mixed Lineage Leukemia (MLL) Interaction Closely Mimic a Natural Protein-Protein Interaction.
J.Med.Chem., 57, 2014
4OGI
DownloadVisualize
BU of 4ogi by Molmil
Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor BI-2536
Descriptor: 1,2-ETHANEDIOL, 4-{[(7R)-8-cyclopentyl-7-ethyl-5-methyl-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxy-N-(1-methylpiperidin-4-yl)benzamide, Bromodomain-containing protein 4
Authors:Filippakopoulos, P, Picaud, S, Jose, B, Martin, S, Fedorov, O, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2014-01-16
Release date:2014-02-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Dual kinase-bromodomain inhibitors for rationally designed polypharmacology.
Nat.Chem.Biol., 10, 2014
4YSH
DownloadVisualize
BU of 4ysh by Molmil
Crystal structure of glycine oxidase from Geobacillus kaustophilus
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, GLYCINE, ...
Authors:Shiono, T, Nomura, T, Arai, R.
Deposit date:2015-03-17
Release date:2016-03-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of glycine oxidase from Geobacillus kaustophilus
to be published
4OGS
DownloadVisualize
BU of 4ogs by Molmil
Crystal structure of GFP S205A/T203V at 2.2 A resolution
Descriptor: CHLORIDE ION, Green fluorescent protein
Authors:Remington, S.J, Saif, M.
Deposit date:2014-01-16
Release date:2014-05-14
Last modified:2014-06-18
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Insight into the structure and the mechanism of the slow proton transfer in the GFP double mutant T203V/S205A.
Phys Chem Chem Phys, 16, 2014
4YSZ
DownloadVisualize
BU of 4ysz by Molmil
Crystal structure of Mitochondrial rhodoquinol-fumarate reductase from Ascaris suum with 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide
Descriptor: 2-iodo-N-[3-(1-methylethoxy)phenyl]benzamide, Cytochrome b-large subunit, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Harada, S, Shiba, T, Sato, D, Yamamoto, A, Nagahama, M, Yone, A, Inaoka, D.K, Sakamoto, K, Inoue, M, Honma, T, Kita, K.
Deposit date:2015-03-17
Release date:2015-08-05
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural Insights into the Molecular Design of Flutolanil Derivatives Targeted for Fumarate Respiration of Parasite Mitochondria
Int J Mol Sci, 16, 2015

224004

PDB entries from 2024-08-21

PDB statisticsPDBj update infoContact PDBjnumon