PDB: 47011 resultsInfo pagesStatus searchChemie searchBIRD

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2M9M	Solution Structure of ERCC4 domain of human FAAP24 Descriptor: Fanconi anemia-associated protein of 24 kDa Authors: Wu, F, Han, X, Shi, C, Gong, W, Tian, C. Deposit date: 2013-06-18 Release date: 2013-09-18 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure analysis of FAAP24 reveals single-stranded DNA-binding activity and domain functions in DNA damage response. Cell Res., 23, 2013
8XAW	Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ... Authors: An, Q, Deng, Z. Deposit date: 2023-12-05 Release date: 2024-06-05 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.73 Å) Cite: Molecular and structural basis of an ATPase-nuclease dual-enzyme anti-phage defense complex. Cell Res., 34, 2024
8XAX	Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ... Authors: An, Q, Deng, Z. Deposit date: 2023-12-05 Release date: 2024-06-05 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Molecular and structural basis of an ATPase-nuclease dual-enzyme anti-phage defense complex. Cell Res., 34, 2024
8WR4	Structure of CbCas9-PcrIIC1 complex bound to 62-bp DNA substrate (non-targeting complex) Descriptor: CbCas9 effector-1, DNA (62-MER), MAGNESIUM ION, ... Authors: Zhang, S, Lin, S, Liu, J.J.G. Deposit date: 2023-10-13 Release date: 2024-06-05 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: Pro-CRISPR PcrIIC1-associated Cas9 system for enhanced bacterial immunity. Nature, 630, 2024
2FBV	WRN exonuclease, Mn complex Descriptor: MANGANESE (II) ION, Werner syndrome helicase Authors: Perry, J.J. Deposit date: 2005-12-10 Release date: 2006-04-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.4 Å) Cite: WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat.Struct.Mol.Biol., 13, 2006
2FBT	WRN exonuclease Descriptor: ACETIC ACID, Werner syndrome helicase Authors: Perry, J.J. Deposit date: 2005-12-10 Release date: 2006-04-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.05 Å) Cite: WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat.Struct.Mol.Biol., 13, 2006
2ITJ	Origin binding domain of the SV40 large T antigen (residues 131-259). P212121 crystal form Descriptor: large T antigen Authors: Martynowski, D, Bochkareva, E, Bochkarev, A. Deposit date: 2006-10-19 Release date: 2006-12-12 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of the origin-binding domain of simian virus 40 large T antigen bound to DNA Embo J., 25, 2006
8ASO	Nickel(II) bound to a non-canonical quadruplex Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3'), NICKEL (II) ION Authors: Lambert, M.C, Hall, J.P. Deposit date: 2022-08-19 Release date: 2023-08-30 Method: X-RAY DIFFRACTION (1.19 Å) Cite: Identifying metal-DNA binding sites, what is the best method to get transition metals into a crystal system? To Be Published
8ASM	Cobalt(II) bound to a non-canonical quadruplex Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3') Authors: Lambert, M.C, Hall, J.P. Deposit date: 2022-08-19 Release date: 2023-08-30 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Identifying metal-DNA binding sites, what is the best method to get transition metals into a crystal system? To Be Published
3SM4	Crystal Structure of the K131A Mutant of Lambda Exonuclease in Complex with a 5'-Phosphorylated 14-mer/12-mer Duplex and Magnesium Descriptor: 5'-D(*TP*CP*GP*GP*TP*AP*CP*AP*GP*TP*AP*G)-3', 5'-D(P*AP*GP*CP*TP*AP*CP*TP*GP*TP*AP*CP*CP*GP*A)-3', CHLORIDE ION, ... Authors: Bell, C.E, Zhang, J. Deposit date: 2011-06-27 Release date: 2011-07-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Crystal structures of {lambda} exonuclease in complex with DNA suggest an electrostatic ratchet mechanism for processivity. Proc.Natl.Acad.Sci.USA, 108, 2011
2M9N	Solution Structure of (HhH)2 domain of human FAAP24 Descriptor: Fanconi anemia-associated protein of 24 kDa Authors: Wu, F, Han, X, Shi, C, Gong, W, Tian, C. Deposit date: 2013-06-18 Release date: 2013-09-18 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure analysis of FAAP24 reveals single-stranded DNA-binding activity and domain functions in DNA damage response. Cell Res., 23, 2013
6IFO	Crystal structure of AcrIIA2-SpyCas9-sgRNA ternary complex Descriptor: AcrIIA2, CRISPR-associated endonuclease Cas9/Csn1, RNA (99-MER) Authors: Liu, L, Wang, Y. Deposit date: 2018-09-20 Release date: 2019-01-23 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.313 Å) Cite: Phage AcrIIA2 DNA Mimicry: Structural Basis of the CRISPR and Anti-CRISPR Arms Race. Mol. Cell, 73, 2019
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
8BAO	Dysgonamonadaceae bacterium CRISPR ancillary nuclease 2 Descriptor: BROMIDE ION, Cyclic tetra-adenylate (cA4), DUF1887 family protein, ... Authors: Li, A.W.H, Doherty, A.J. Deposit date: 2022-10-11 Release date: 2022-11-30 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Reverse transcriptases prime DNA synthesis. Nucleic Acids Res., 51, 2023
3V9W	Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.702 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
6YN1	Crystal structure of histone chaperone APLF acidic domain bound to the histone H2A-H2B-H3-H4 octamer Descriptor: Aprataxin and PNK-like factor, CHLORIDE ION, GLYCEROL, ... Authors: Corbeski, I, Guo, X, Van Ingen, H, Sixma, T.K. Deposit date: 2020-04-10 Release date: 2021-11-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Chaperoning of the histone octamer by the acidic domain of DNA repair factor APLF. Sci Adv, 8, 2022
7LCC	Helitron transposase bound to LTS Descriptor: Helraiser K1068Q, LTS, ZINC ION Authors: Kosek, D, Dyda, F. Deposit date: 2021-01-10 Release date: 2021-08-25 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.66 Å) Cite: The large bat Helitron DNA transposase forms a compact monomeric assembly that buries and protects its covalently bound 5'-transposon end. Mol.Cell, 81, 2021
1G8N	MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3', MAGNESIUM ION Authors: Tsunoda, M, Karino, N, Ueno, Y, Matsuda, A, Takenaka, A. Deposit date: 2000-11-20 Release date: 2001-02-05 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystallization and preliminary X-ray analysis of a DNA dodecamer containing 2'-deoxy-5-formyluridine; what is the role of magnesium cation in crystallization of Dickerson-type DNA dodecamers? Acta Crystallogr.,Sect.D, 57, 2001
1G9Y	HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX WITH CALCIUM Descriptor: 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*TP*TP*TP*TP*GP*C)-3', 5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*GP*TP*TP*TP*CP*G)-3', CALCIUM ION, ... Authors: Chevalier, B, Monnat, R.J, Stoddard, B.L. Deposit date: 2000-11-28 Release date: 2001-04-02 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.05 Å) Cite: The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites. Nat.Struct.Biol., 8, 2001
1SXQ	BGT in complex with a 13mer DNA containing a central C:G base pair and UDP Descriptor: 5'-D(*AP*AP*AP*AP*AP*AP*CP*TP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*AP*GP*TP*TP*TP*TP*TP*T)-3', DNA beta-glucosyltransferase, ... Authors: Lariviere, L, Morera, S. Deposit date: 2004-03-31 Release date: 2004-06-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase J.Biol.Chem., 279, 2004
3BD3	Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, catalytic antibody Authors: Park, S.K, Kim, J.S. Deposit date: 2007-11-14 Release date: 2008-04-01 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals Proteins, 71, 2008
3V9Z	Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
1SXP	BGT in complex with a 13mer DNA containing a central A:G mismatch Descriptor: 5'-D(*A*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*T)-3', DNA beta-glucosyltransferase, ... Authors: Lariviere, L, Morera, S. Deposit date: 2004-03-31 Release date: 2004-06-22 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural evidence of a passive base flipping mechanism for {beta}-Glucosyltransferase J.Biol.Chem., 279, 2004
1G8V	MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGAATF5UCGCG):5-FORMYLURIDINE/ ADENOSINE BASE-PAIRS IN B-DNA Descriptor: 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3' Authors: Tsunoda, M, Karino, N, Ueno, Y, Matsuda, A, Takenaka, A. Deposit date: 2000-11-21 Release date: 2001-02-05 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystallization and preliminary X-ray analysis of a DNA dodecamer containing 2'-deoxy-5-formyluridine; what is the role of magnesium cation in crystallization of Dickerson-type DNA dodecamers? Acta Crystallogr.,Sect.D, 57, 2001
2FBX	WRN exonuclease, Mg complex Descriptor: MAGNESIUM ION, Werner syndrome helicase Authors: Perry, J.J. Deposit date: 2005-12-10 Release date: 2006-04-25 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.2 Å) Cite: WRN exonuclease structure and molecular mechanism imply an editing role in DNA end processing. Nat.Struct.Mol.Biol., 13, 2006

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