PDB: 46200 resultsInfo pagesStatus searchChemie searchBIRD

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3HEF	Crystal structure of the bacteriophage Sf6 terminase small subunit Descriptor: Gene 1 protein Authors: Zhao, H, Tang, L. Deposit date: 2009-05-08 Release date: 2010-02-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Crystal structure of the DNA-recognition component of the bacterial virus Sf6 genome-packaging machine Proc.Natl.Acad.Sci.USA, 107, 2010
3L2W	Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir) Descriptor: 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*TP*GP*TP*A)-3', 5'-D(*TP*AP*CP*AP*AP*AP*AP*TP*TP*CP*CP*AP*TP*GP*AP*CP*A)-3', 6-(3-chloro-2-fluorobenzyl)-1-[(1S)-1-(hydroxymethyl)-2-methylpropyl]-7-methoxy-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, ... Authors: Hare, S, Gupta, S.S, Cherepanov, P. Deposit date: 2009-12-15 Release date: 2010-02-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Retroviral intasome assembly and inhibition of DNA strand transfer Nature, 464, 2010
2HC7	2'-selenium-T A-DNA [G(TSe)GTACAC] Descriptor: 5'-D(*GP*(2ST)P*GP*TP*AP*CP*AP*C)-3' Authors: Jiang, J, Sheng, J, Huang, Z. Deposit date: 2006-06-15 Release date: 2006-07-04 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Crystal Structure of 2'-Selenium modified T A-DNA G(TSe)GTACAC TO BE PUBLISHED
2DG6	Crystal structure of the putative transcriptional regulator SCO5550 from Streptomyces coelicolor A3(2) Descriptor: putative transcriptional regulator Authors: Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I. Deposit date: 2006-03-08 Release date: 2007-03-13 Last modified: 2018-03-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural and genomic DNA analysis of a putative transcription factor SCO5550 from Streptomyces coelicolor A3(2): regulating the expression of gene sco5551 as a transcriptional activator with a novel dimer shape Biochem. Biophys. Res. Commun., 435, 2013
8JFO	Crystal structure of anti-CRISPR protein AcrIIA15 Descriptor: AcrIIA15 Authors: Deng, X, Wang, Y. Deposit date: 2023-05-18 Release date: 2024-02-28 Last modified: 2024-09-11 Method: X-RAY DIFFRACTION (2.3 Å) Cite: An anti-CRISPR that represses its own transcription while blocking Cas9-target DNA binding. Nat Commun, 15, 2024
5FTB	Crystal structure of Pif1 helicase from Bacteroides in complex with AMPPNP Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, POTASSIUM ION, ... Authors: Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G. Deposit date: 2016-01-12 Release date: 2016-02-03 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding Nucleic Acids Res., 44, 2016
5FTD	Crystal structure of Pif1 helicase from Bacteroides apo form Descriptor: PHOSPHATE ION, TPR DOMAIN PROTEIN Authors: Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G. Deposit date: 2016-01-12 Release date: 2016-02-03 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (1.695 Å) Cite: Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding Nucleic Acids Res., 44, 2016
1B8Z	HU FROM THERMOTOGA MARITIMA Descriptor: PROTEIN (HISTONELIKE PROTEIN HU) Authors: Christodoulou, E, Rypniewski, W.R, Vorgias, C.E. Deposit date: 1999-02-03 Release date: 2000-02-03 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Cloning, overproduction, purification and crystallization of the DNA binding protein HU from the hyperthermophilic eubacterium Thermotoga maritima. Acta Crystallogr.,Sect.D, 54, 1998
4IC1	Crystal structure of SSO0001 Descriptor: IRON/SULFUR CLUSTER, MANGANESE (II) ION, Uncharacterized protein Authors: Nocek, B, Skarina, T, Lemak, S, Beloglazova, N, Flick, R, Brown, G, Savchenko, A, Joachimiak, A, Yakunin, A.F, Midwest Center for Structural Genomics (MCSG) Deposit date: 2012-12-09 Release date: 2013-01-16 Last modified: 2014-07-02 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Toroidal structure and DNA cleavage by the CRISPR-associated [4Fe-4S] cluster containing Cas4 nuclease SSO0001 from Sulfolobus solfataricus. J.Am.Chem.Soc., 135, 2013
3V9U	Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.298 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
8OE3	Crystal structure of the non-canonical quadruplex d(GCATGCT) before soaking Descriptor: COBALT HEXAMMINE(III), DNA (5'-D(*GP*CP*AP*TP*GP*CP*T)-3') Authors: Lambert, M.C, Hall, J.P. Deposit date: 2023-03-10 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (1.08 Å) Cite: Oxidative damage induce copper(II)-DNA binding To Be Published
3FCK	Complex of UNG2 and a fragment-based design inhibitor Descriptor: 3-({[3-({[(1E)-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)methylidene]amino}oxy)propyl]amino}methyl)benzoic acid, Uracil-DNA glycosylase Authors: Bianchet, M.A, Chung, S, Parker, J.B, Amzel, L.M, Stivers, J.T. Deposit date: 2008-11-21 Release date: 2009-04-28 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Impact of linker strain and flexibility in the design of a fragment-based inhibitor Nat.Chem.Biol., 5, 2009
7UFM	VchTnsC AAA+ with DNA (double heptamer) Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (36-MER), VchTnsC Authors: Fernandez, I.S, Sternberg, S.H. Deposit date: 2022-03-22 Release date: 2022-06-08 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Selective TnsC recruitment enhances the fidelity of RNA-guided transposition. Nature, 609, 2022
7KRW	Stimulating state of near full-length Hsp70 DnaK fused with a substrate peptide Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK fused with substrate peptide Authors: Wang, W, Hendrickson, W.A. Deposit date: 2020-11-20 Release date: 2021-09-15 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (7.7 Å) Cite: Conformational equilibria in allosteric control of Hsp70 chaperones. Mol.Cell, 81, 2021
7KO2	Restraining state of near full-length Hsp70 DnaK Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK, MAGNESIUM ION, ... Authors: Wang, W, Hendrickson, W.A. Deposit date: 2020-11-06 Release date: 2021-09-15 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Conformational equilibria in allosteric control of Hsp70 chaperones. Mol.Cell, 81, 2021
7KRT	Restraining state of a truncated Hsp70 DnaK Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Chaperone protein DnaK, MAGNESIUM ION Authors: Wang, W, Hendrickson, W.A. Deposit date: 2020-11-20 Release date: 2021-09-15 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.79 Å) Cite: Conformational equilibria in allosteric control of Hsp70 chaperones. Mol.Cell, 81, 2021
7SQ1	BG505.MD39TS Env trimer in complex with Fab from antibody C05 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, C05 Fab Light chain, ... Authors: Moore, A, Du, J, Xu, Z, Walker, S, Kulp, D.W, Pallesen, J. Deposit date: 2021-11-04 Release date: 2022-06-22 Last modified: 2022-12-07 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Induction of tier-2 neutralizing antibodies in mice with a DNA-encoded HIV envelope native like trimer. Nat Commun, 13, 2022
3FCI	Complex of UNG2 and a fragment-based designed inhibitor Descriptor: 3-{(E)-[(3-{[(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)methyl]amino}propoxy)imino]methyl}benzoic acid, SODIUM ION, THIOCYANATE ION, ... Authors: Bianchet, M.A, Chung, S, Parker, J.B, Amzel, L.M, Stivers, J.T. Deposit date: 2008-11-21 Release date: 2009-04-28 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.27 Å) Cite: Impact of linker strain and flexibility in the design of a fragment-based inhibitor Nat.Chem.Biol., 5, 2009
5FTC	Crystal structure of Pif1 helicase from Bacteroides in complex with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, TPR DOMAIN PROTEIN Authors: Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G. Deposit date: 2016-01-12 Release date: 2016-02-03 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.269 Å) Cite: Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding Nucleic Acids Res., 44, 2016
8XAX	Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ... Authors: An, Q, Deng, Z. Deposit date: 2023-12-05 Release date: 2024-06-05 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Molecular and structural basis of an ATPase-nuclease dual-enzyme anti-phage defense complex. Cell Res., 34, 2024
8XAW	Cryo-EM structure of an anti-phage defense complex bound to AMPPNP and DNA at state 1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ... Authors: An, Q, Deng, Z. Deposit date: 2023-12-05 Release date: 2024-06-05 Last modified: 2024-08-14 Method: ELECTRON MICROSCOPY (2.73 Å) Cite: Molecular and structural basis of an ATPase-nuclease dual-enzyme anti-phage defense complex. Cell Res., 34, 2024
3FCF	Complex of UNG2 and a fragment-based designed inhibitor Descriptor: 3-[(1E,7E)-8-(2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-3,6-dioxa-2,7-diazaocta-1,7-dien-1-yl]benzoic acid, THIOCYANATE ION, Uracil-DNA glycosylase Authors: Bianchet, M.A, Chung, S, Parker, J.B, Amzel, L.M, Stivers, J.T. Deposit date: 2008-11-21 Release date: 2009-04-28 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.84 Å) Cite: Impact of linker strain and flexibility in the design of a fragment-based inhibitor Nat.Chem.Biol., 5, 2009
5FTF	Crystal structure of Pif1 helicase from Bacteroides double mutant L95C-I339C Descriptor: ADENOSINE-5'-DIPHOSPHATE, TPR DOMAIN PROTEIN Authors: Chen, W.-F, Dai, Y.-X, Duan, X.-L, Liu, N.-N, Shi, W, Li, M, Dou, S.-X, Li, N, Dong, Y.-H, Rety, S, Xi, X.-G. Deposit date: 2016-01-13 Release date: 2016-02-03 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.412 Å) Cite: Crystal Structures of the Bspif1 Helicase Reveal that a Major Movement of the 2B SH3 Domain is Required for DNA Unwinding Nucleic Acids Res., 44, 2016
7UID	Thyclotides peptide nucleic acid in complex with DNA Descriptor: CHLORIDE ION, DNA (5'-D(*GP*AP*TP*GP*TP*GP*AP*TP*A)-3'), Thyclotide, ... Authors: Botos, I, Appella, D.H. Deposit date: 2022-03-29 Release date: 2023-04-05 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Variation of Tetrahydrofurans in Thyclotides Enhances Oligonucleotide Binding and Cellular Uptake of Peptide Nucleic Acids. Jacs Au, 3, 2023
1G3V	CRYSTAL STRUCTURE OF NICKEL-D[CGTGTACACG]2 Descriptor: 5'-D(*CP*GP*TP*GP*TP*AP*CP*AP*CP*G)-3', NICKEL (II) ION Authors: Subirana, J.A, Abrescia, N.G.A. Deposit date: 2000-10-25 Release date: 2002-01-11 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Nickel-guanine interactions in DNA: crystal structure of nickel-d[CGTGTACACG]2. J.Biol.Inorg.Chem., 7, 2002

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