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9CIP
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BU of 9cip by Molmil
MicroED structure of the C11 cysteine protease clostripain
Descriptor: Clostripain, SODIUM ION
Authors:Ruma, Y.N, Bu, G, Hattne, J, Gonen, T.
Deposit date:2024-07-03
Release date:2024-08-14
Method:ELECTRON CRYSTALLOGRAPHY (2.5 Å)
Cite:MicroED structure of the C11 cysteine protease clostripain.
J Struct Biol X, 10, 2024
8VNU
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BU of 8vnu by Molmil
Homing endonuclease H98A I-PpoI-DNA complex at pH6.0 (K+ MES) with 70 mM Tl+ for 1800s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8VN7
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BU of 8vn7 by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH8.0 (Tris) with 500 uM Mg2+ for 20s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*A)-3'), DNA (5'-D(P*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8X5L
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BU of 8x5l by Molmil
The Crystal Structure of PRKACA from Biortus.
Descriptor: (2S)-2-(4-chlorophenyl)-2-hydroxy-2-[4-(1H-pyrazol-4-yl)phenyl]ethanaminium, SODIUM ION, cAMP-dependent protein kinase catalytic subunit alpha
Authors:Wang, F, Cheng, W, Lv, Z, Lin, D, Pan, W.
Deposit date:2023-11-17
Release date:2023-12-27
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:The Crystal Structure of PRKACA from Biortus.
To Be Published
8CJC
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BU of 8cjc by Molmil
F515A variant of the CODH/ACS complex of C. hydrogenoformans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CO-methylating acetyl-CoA synthase, ...
Authors:Ruickoldt, J, Jeoung, J, Lennartz, F, Dobbek, H.
Deposit date:2023-02-13
Release date:2024-02-21
Last modified:2024-07-31
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Coupling CO 2 Reduction and Acetyl-CoA Formation: The Role of a CO Capturing Tunnel in Enzymatic Catalysis.
Angew.Chem.Int.Ed.Engl., 63, 2024
8VNH
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BU of 8vnh by Molmil
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 80s
Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ...
Authors:Chang, C, Gao, Y.
Deposit date:2024-01-13
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s
To Be Published
8WZR
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BU of 8wzr by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 100 ns after photoexcitation at RT.
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
Deposit date:2023-11-02
Release date:2024-09-04
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
9FCF
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BU of 9fcf by Molmil
Medicago truncatula 5'-ProFAR isomerase (HISN3) D57N mutant in complex with ProFAR
Descriptor: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic, CHLORIDE ION, ...
Authors:Witek, W, Imiolczyk, B, Ruszkowski, M.
Deposit date:2024-05-15
Release date:2024-09-04
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural, kinetic, and evolutionary peculiarities of HISN3, a plant 5'-ProFAR isomerase.
Plant Physiol Biochem., 215, 2024
8YBH
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BU of 8ybh by Molmil
Crystal structure of lysozyme by macromolecular crystallography
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Nam, K.H.
Deposit date:2024-02-14
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of lysozyme by macromolecular crystallography
To Be Published
8VQX
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BU of 8vqx by Molmil
Structure of SARS-CoV-2 main protease with potent peptide aldehyde inhibitor
Descriptor: 1,2-ETHANEDIOL, 3C-like proteinase nsp5, DI(HYDROXYETHYL)ETHER, ...
Authors:Dougan, D.R, Lane, W.
Deposit date:2024-01-19
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Exploiting high-energy hydration sites for the discovery of potent peptide aldehyde inhibitors of the SARS-CoV-2 main protease with cellular antiviral activity.
Bioorg.Med.Chem., 103, 2024
9END
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BU of 9end by Molmil
Crystal structure of Methanopyrus kandleri malate dehydrogenase mutant 3
Descriptor: CHLORIDE ION, Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Coquille, S, Roche, J, Girard, E, Madern, D.
Deposit date:2024-03-12
Release date:2024-07-10
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Navigating the conformational landscape of an enzyme. Stabilization of a low populated conformer by evolutionary mutations triggers Allostery into a non-allosteric enzyme.
To be published
9BI8
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BU of 9bi8 by Molmil
Crystal structure of inhibitor GNE-6893 bound to HPK1
Descriptor: (3R,4S)-4-methyloxolan-3-yl [(6P)-8-amino-7-fluoro-6-(8-methyl-2,3-dihydro-1H-pyrido[2,3-b][1,4]oxazin-7-yl)isoquinolin-3-yl]carbamate, DIMETHYL SULFOXIDE, Mitogen-activated protein kinase kinase kinase kinase 1, ...
Authors:Kiefer, J.R, Tellis, J.C, Chan, B.K, Wang, W, Wu, P, Choo, E.F, Heffron, T.P, Wei, B, Siu, M.
Deposit date:2024-04-22
Release date:2024-10-02
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Discovery of GNE-6893, a Potent, Selective, Orally Bioavailable Small Molecule Inhibitor of HPK1.
Acs Med.Chem.Lett., 15, 2024
8YK1
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BU of 8yk1 by Molmil
Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct 23-844
Descriptor: Alpha-galactosidase, SODIUM ION
Authors:Kashima, T, Ashida, H, Fushinobu, S.
Deposit date:2024-03-04
Release date:2024-07-10
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (2.02 Å)
Cite:Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen.
J Appl Glycosci (1999), 71, 2024
8YBG
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BU of 8ybg by Molmil
Crystal structure of lysozyme by serial synchrotron crystallography
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Nam, K.H.
Deposit date:2024-02-14
Release date:2024-02-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal structure of lysozyme by serial synchrotron crystallography
To Be Published
8YJA
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BU of 8yja by Molmil
Structure of Vibrio vulnificus MARTX cysteine protease domain lacking beta-flap
Descriptor: INOSITOL HEXAKISPHOSPHATE, MARTX cysteine protease domain, SODIUM ION
Authors:Chen, L, Khan, H, Tan, L, Li, X, Zhang, G, Im, Y.J.
Deposit date:2024-03-01
Release date:2024-07-10
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis of the activation of MARTX cysteine protease domain from Vibrio vulnificus.
Plos One, 19, 2024
8YK2
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BU of 8yk2 by Molmil
Blood group B alpha-1,3-galactosidase AgaBb from Bifidobacterium bifidum, construct T7-tag_24-700
Descriptor: Alpha-galactosidase, GLYCEROL, SODIUM ION, ...
Authors:Kashima, T, Akama, M, Ashida, H, Fushinobu, S.
Deposit date:2024-03-04
Release date:2024-07-10
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Crystal Structure of Bifidobacterium bifidum Glycoside Hydrolase Family 110 alpha-Galactosidase Specific for Blood Group B Antigen.
J Appl Glycosci (1999), 71, 2024
9B1Z
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BU of 9b1z by Molmil
Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (Apo)
Descriptor: ADP-ribose pyrophosphatase, SODIUM ION
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-03-14
Release date:2024-03-27
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (Apo)
To be published
8WC0
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BU of 8wc0 by Molmil
Crystal structure of EcThsA
Descriptor: GLYCEROL, NAD(+) hydrolase ThsA, SODIUM ION, ...
Authors:Chen, Q, Yu, Y.
Deposit date:2023-09-11
Release date:2024-09-18
Method:X-RAY DIFFRACTION (2.249 Å)
Cite:Self-association activates ThsB NAD+ hydrolase for defense against phage infection
To Be Published
4XEB
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BU of 4xeb by Molmil
The structure of P. funicolosum Cel7A
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, Glucanase, ...
Authors:Alahuhta, P.M, Lunin, V.V.
Deposit date:2014-12-23
Release date:2016-06-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Engineering enhanced cellobiohydrolase activity
Nat Commun, 9(1), 2018
8VIH
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BU of 8vih by Molmil
EgtB-IV from Crocosphaera subtropica, an ergothioneine-biosynthetic type IV sulfoxide synthase in complex with hercynine
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, FE (III) ION, ...
Authors:Ireland, K.A, Davis, K.M.
Deposit date:2024-01-04
Release date:2024-08-07
Last modified:2024-09-11
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insights into the convergent evolution of sulfoxide synthase EgtB-IV, an ergothioneine-biosynthetic homolog of ovothiol synthase OvoA.
Structure, 2024
9B7F
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BU of 9b7f by Molmil
S_SAD structure of HEWL using lossless default compression
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Lysozyme C, ...
Authors:Jakoncic, J, Bernstein, H.J, Soares, A.S, Horvat, K.
Deposit date:2024-03-27
Release date:2024-04-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Investigation of fast and efficient lossless compression algorithms for macromolecular crystallography experiments.
J.Synchrotron Radiat., 31, 2024
9C1Q
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BU of 9c1q by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with OICR-39512 compound
Descriptor: (4P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-(3-methoxyprop-1-yn-1-yl)-1H-pyrrole-3-carboxamide, CHLORIDE ION, DDB1- and CUL4-associated factor 1, ...
Authors:kimani, S, Dong, A, Li, Y, Seitova, A, Al-awar, R, Wilson, B, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L.
Deposit date:2024-05-29
Release date:2024-08-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the WDR domain of human DCAF1 in complex with OICR-39512 compound
To be published
4XOP
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BU of 4xop by Molmil
Tailspike protein double mutant D339N/E372Q of E. coli bacteriophage HK620 in complex with hexasaccharide
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FORMIC ACID, SODIUM ION, ...
Authors:Gohlke, U, Broeker, N.K, Heinemann, U, Seckler, R, Barbirz, S.
Deposit date:2015-01-16
Release date:2016-01-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Enthalpic cost of water removal from a hydrophobic glucose binding cavity on HK620 tailspike protein.
to be published
9B74
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BU of 9b74 by Molmil
Crystal structure of humanized 44H10 Fab Version 14
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, SODIUM ION, ...
Authors:Kassardjian, A, Julien, J.P.
Deposit date:2024-03-27
Release date:2024-08-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Humanization of Pan-HLA-DR mAb 44H10 Hinges on Critical Residues in the Antibody Framework.
Antibodies, 13, 2024
8WR2
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BU of 8wr2 by Molmil
Crystal Structure of Human Pyridoxal Kinase with bound Luteolin
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one, DIMETHYL SULFOXIDE, ...
Authors:Fan, J, Zhu, Y.
Deposit date:2023-10-12
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Discovery and characterization of natural product luteolin as an effective inhibitor of human pyridoxal kinase.
Bioorg.Chem., 143, 2024

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PDB entries from 2024-10-16

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