PDB: 73420 resultsInfo pagesStatus searchChemie searchBIRD

---

3VA0	Crystal structure of RNase T in complex with a di-nucleotide product (GG) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*G)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.201 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
3V9X	Crystal structure of RNase T in complex with a preferred ssDNA (AAA) with two Mg in the active site Descriptor: DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.9 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
7NT5	CryoEM structure of the Nipah virus nucleocapsid single helical turn assembly Descriptor: Nucleoprotein, RNA (78-MER) Authors: Ker, D.S, Jenkins, H.T, Greive, S.J, Antson, A.A. Deposit date: 2021-03-09 Release date: 2021-07-07 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: CryoEM structure of the Nipah virus nucleocapsid assembly. Plos Pathog., 17, 2021
3KTV	Crystal structure of the human SRP19/S-domain SRP RNA complex Descriptor: MAGNESIUM ION, POTASSIUM ION, SRP RNA, ... Authors: Wild, K, Bange, G, Bozkurt, G, Sinning, I. Deposit date: 2009-11-26 Release date: 2010-02-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Structural insights into the assembly of the human and archaeal signal recognition particles. Acta Crystallogr.,Sect.D, 66, 2010
6FPP	Structure of S. pombe Mmi1 Descriptor: GLYCEROL, MAGNESIUM ION, YTH domain-containing protein mmi1 Authors: Stowell, J.A.W, Hill, C.H, Yu, M, Wagstaff, J.L, McLaughlin, S.H, Freund, S.M.V, Passmore, L.A. Deposit date: 2018-02-11 Release date: 2018-05-09 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.93 Å) Cite: A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding. J. Biol. Chem., 293, 2018
7YW5	Crystal Structure of the ITS1 processing by human ribonuclease ISG20L2 with mutation D327A Descriptor: Interferon-stimulated 20 kDa exonuclease-like 2 Authors: Yang, X.Y, Liu, X.H. Deposit date: 2022-08-21 Release date: 2024-01-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.77 Å) Cite: Molecular mechanism of human ISG20L2 for the ITS1 cleavage in the processing of 18S precursor ribosomal RNA. Nucleic Acids Res., 52, 2024
6X2N	Mfd-bound E.coli RNA polymerase elongation complex - I state Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (64-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Llewellyn, E, Chen, J, Kang, J.Y, Darst, S.A. Deposit date: 2020-05-20 Release date: 2021-02-03 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural basis for transcription complex disruption by the Mfd translocase. Elife, 10, 2021
6X4W	Mfd-bound E.coli RNA polymerase elongation complex - III state Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (64-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Llewellyn, E, Chen, J, Kang, J.Y, Darst, S.A. Deposit date: 2020-05-24 Release date: 2021-02-03 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structural basis for transcription complex disruption by the Mfd translocase. Elife, 10, 2021
6X26	Mfd-bound E.coli RNA polymerase elongation complex - L1 state Descriptor: DNA (64-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Llewellyn, E, Chen, J, Kang, J.Y, Darst, S.A. Deposit date: 2020-05-20 Release date: 2021-02-03 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis for transcription complex disruption by the Mfd translocase. Elife, 10, 2021
8D29	Crystal structure of theophylline aptamer - apo form Descriptor: Fab heavy chain, Fab light chain, POTASSIUM ION, ... Authors: Menichelli, E, Spraggon, G. Deposit date: 2022-05-28 Release date: 2022-11-30 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.81 Å) Cite: Discovery of small molecules that target a tertiary-structured RNA. Proc.Natl.Acad.Sci.USA, 119, 2022
8B02	Crystal structure of the dsRBD domain of tRNA-dihydrouridine(20) synthase from Amphimedon queenslandica Descriptor: BETA-MERCAPTOETHANOL, CHLORIDE ION, DRBM domain-containing protein, ... Authors: Pecqueur, L, Faivre, B, Hamdane, D. Deposit date: 2022-09-07 Release date: 2022-11-30 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.676 Å) Cite: Evolutionary Diversity of Dus2 Enzymes Reveals Novel Structural and Functional Features among Members of the RNA Dihydrouridine Synthases Family. Biomolecules, 12, 2022
6KR6	Crystal structure of Drosophila Piwi Descriptor: MERCURY (II) ION, Protein piwi, ZINC ION, ... Authors: Yamaguchi, S, Oe, A, Yamashita, K, Hirano, S, Mastumoto, N, Ishitani, R, Nishimasu, H, Nureki, O. Deposit date: 2019-08-21 Release date: 2020-02-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal structure of Drosophila Piwi. Nat Commun, 11, 2020
8E3H	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, Mg-ADP-BeF3, and NusG; Rho hexamer part Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-17 Release date: 2022-09-07 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
6T0U	Bat Influenza A polymerase product dissociation complex using 44-mer vRNA template with intact oligo(U) sequence Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA-directed RNA polymerase catalytic subunit, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2019-10-03 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.12 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
8E5L	Escherichia coli Rho-dependent transcription pre-termination complex containing 21 nt long RNA spacer, Mg-ADP-BeF3, and NusG; Rho hexamer part Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-22 Release date: 2022-09-07 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
6X2F	Mfd-bound E.coli RNA polymerase elongation complex - L2 state Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (64-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Llewellyn, E, Chen, J, Kang, J.Y, Darst, S.A. Deposit date: 2020-05-20 Release date: 2021-02-03 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (4 Å) Cite: Structural basis for transcription complex disruption by the Mfd translocase. Elife, 10, 2021
8DK7	Crystal structure of theophylline aptamer soaked with TAL2 Descriptor: FAB heavy chain, FAB light chain, RNA (34-MER) Authors: Menichelli, E, Spraggon, G. Deposit date: 2022-07-04 Release date: 2022-11-30 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Discovery of small molecules that target a tertiary-structured RNA. Proc.Natl.Acad.Sci.USA, 119, 2022
3IY9	Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model Descriptor: 39S ribosomal protein L11, mitochondrial, 39S ribosomal protein L16, ... Authors: Sharma, M.R, Booth, T.M, Simpson, L, Maslov, D.A, Agrawal, R.K. Deposit date: 2009-04-20 Release date: 2009-07-07 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (14.1 Å) Cite: Structure of a mitochondrial ribosome with minimal RNA Proc.Natl.Acad.Sci.USA, 106, 2009
6LBJ	Structure of mouse GLD-2 (Terminal nucleotidyltransferase 2, TENT2) Descriptor: Poly(A) RNA polymerase GLD2 Authors: Ma, X.Y, Gao, S. Deposit date: 2019-11-14 Release date: 2020-07-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.70444059 Å) Cite: Structures of mammalian GLD-2 proteins reveal molecular basis of their functional diversity in mRNA and microRNA processing. Nucleic Acids Res., 48, 2020
6LBK	Structure of rat GLD-2 (Terminal nucleotidyltransferase 2, TENT2) Descriptor: Poly(A) RNA polymerase GLD2 Authors: Ma, X.Y, Gao, S. Deposit date: 2019-11-14 Release date: 2020-07-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4956882 Å) Cite: Structures of mammalian GLD-2 proteins reveal molecular basis of their functional diversity in mRNA and microRNA processing. Nucleic Acids Res., 48, 2020
6T0R	Bat Influenza A polymerase product dissociation complex using 44-mer vRNA template with mutated oligo(U) sequence Descriptor: Polymerase acidic protein, Polymerase basic protein 2, RNA-directed RNA polymerase catalytic subunit, ... Authors: Wandzik, J.M, Kouba, T, Cusack, S. Deposit date: 2019-10-03 Release date: 2020-04-15 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (2.82 Å) Cite: A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase. Cell, 181, 2020
6Y5Q	human 17S U2 snRNP Descriptor: HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, Probable ATP-dependent RNA helicase DDX46, ... Authors: Zhang, Z, Will, C.L, Bertram, K, Luehrmann, R, Stark, H. Deposit date: 2020-02-25 Release date: 2020-06-17 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (7.1 Å) Cite: Molecular architecture of the human 17S U2 snRNP. Nature, 583, 2020
8JSL	The structure of EBOV L-VP35-RNA complex Descriptor: Polymerase cofactor VP35, RNA-directed RNA polymerase L, The leader sequence of EBOV, ... Authors: Qi, P, Yi, S. Deposit date: 2023-06-20 Release date: 2023-09-27 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Molecular mechanism of de novo replication by the Ebola virus polymerase. Nature, 622, 2023
8JSM	The structure of EBOV L-VP35-RNA complex (conformation 1) Descriptor: Polymerase cofactor VP35, RNA-directed RNA polymerase L, The leader sequence of EBOV genome., ... Authors: Qi, P, Yi, S. Deposit date: 2023-06-20 Release date: 2023-09-27 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Molecular mechanism of de novo replication by the Ebola virus polymerase. Nature, 622, 2023
8JSN	The structure of EBOV L-VP35-RNA complex (conformation 2) Descriptor: Polymerase cofactor VP35, RNA-directed RNA polymerase L, The leader sequence of EBOV genome, ... Authors: Qi, P, Yi, S. Deposit date: 2023-06-20 Release date: 2023-09-27 Last modified: 2023-11-01 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Molecular mechanism of de novo replication by the Ebola virus polymerase. Nature, 622, 2023

<411412413414415416417418419420421422423424425426>