PDB: 2055 resultsInfo pagesStatus searchChemie searchBIRD

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5MC6	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Schmidt, C, Kowalinski, E, Shanmuganathan, V, Defenouillere, Q, Braunger, K, Heuer, A, Pech, M, Namane, A, Berninghausen, O, Fromont-Racine, M, Jacquier, A, Conti, E, Becker, T, Beckmann, R. Deposit date: 2016-11-09 Release date: 2017-01-18 Last modified: 2019-12-11 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: The cryo-EM structure of a ribosome-Ski2-Ski3-Ski8 helicase complex. Science, 354, 2016
5MEI	Crystal structure of Agelastatin A bound to the 80S ribosome Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: McClary, B, Zinshteyn, B, Meyer, M, Jouanneau, M, Pellegrino, S, Yusupova, G, Schuller, A, Reyes, J.C.P, Lu, J, Luo, C, Dang, Y, Romo, D, Yusupov, M, Green, R, Liu, J.O. Deposit date: 2016-11-15 Release date: 2017-06-28 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Inhibition of Eukaryotic Translation by the Antitumor Natural Product Agelastatin A. Cell Chem Biol, 24, 2017
5MFC	Designed armadillo repeat protein YIIIM5AII in complex with (KR)4-GFP Descriptor: (KR)4-Green fluorescent protein,Green fluorescent protein, ACETATE ION, YIIIM5AII Authors: Hansen, S, Kiefer, J, Madhurantakam, C, Mittl, P, Plueckthun, A. Deposit date: 2016-11-18 Release date: 2017-07-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of designed armadillo repeat proteins binding to peptides fused to globular domains. Protein Sci., 26, 2017
5H7H	Crystal structure of the BCL6 BTB domain in complex with F1324(10-13) Descriptor: 1,2-ETHANEDIOL, B-cell lymphoma 6 protein, F1324 peptide residues 10-13 Authors: Sogabe, S, Ida, K, Lane, W, Snell, G. Deposit date: 2016-11-18 Release date: 2016-12-07 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Discovery of high-affinity BCL6-binding peptide and its structure-activity relationship. Biochem. Biophys. Res. Commun., 482, 2017
5H7G	Crystal structure of the BCL6 BTB domain in complex with F1324 Descriptor: B-cell lymphoma 6 protein, F1324 peptide, SULFATE ION Authors: Sogabe, S, Ida, K, Lane, W, Snell, G. Deposit date: 2016-11-18 Release date: 2016-12-07 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Discovery of high-affinity BCL6-binding peptide and its structure-activity relationship. Biochem. Biophys. Res. Commun., 482, 2017
5TZS	Architecture of the yeast small subunit processome Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 3' domain-associated, ... Authors: Chaker-Margot, M, Barandun, J, Hunziker, M, Klinge, S. Deposit date: 2016-11-22 Release date: 2016-12-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (5.1 Å) Cite: Architecture of the yeast small subunit processome. Science, 355, 2017
5WTS	Green fluorescent protein linked MTide-02 inhibitor in complex with mdm2 Descriptor: E3 ubiquitin-protein ligase Mdm2, GLYCEROL, Green fluorescent protein linked MTide-02, ... Authors: Wongsantichon, J, Robinson, R.C, Ghadessy, F.J. Deposit date: 2016-12-14 Release date: 2017-12-20 Last modified: 2020-11-25 Method: X-RAY DIFFRACTION (3.004 Å) Cite: Green fluorescent protein linked peptide inhibitor PMI in complex with mdm2 To Be Published
5WUA	Structure of a Pancreatic ATP-sensitive Potassium Channel Descriptor: ATP-sensitive inward rectifier potassium channel 11,superfolder GFP, SUR1 Authors: Li, N, Wu, J.-X, Chen, L, Gao, N. Deposit date: 2016-12-16 Release date: 2017-01-25 Method: ELECTRON MICROSCOPY (5.6 Å) Cite: Structure of a Pancreatic ATP-Sensitive Potassium Channel Cell, 168, 2017
5WWK	Highly stable green fluorescent protein Descriptor: Green fluorescent protein Authors: Sriram, R, George, A, Kesavan, M, Jaimohan, S.M, Kamini, N.R, Easwaramoorthi, S, Ganesh, S, Gunasekaran, K, Ayyadurai, N. Deposit date: 2017-01-02 Release date: 2017-12-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.199 Å) Cite: Excited State Electronic Interconversion and Structural Transformation of Engineered Red-Emitting Green Fluorescent Protein Mutant. J.Phys.Chem.B, 123, 2019
5MSE	GFP nuclear transport receptor mimic 3B8 Descriptor: Green fluorescent protein, IMIDAZOLE, SODIUM ION Authors: Huyton, T, Gorlich, D. Deposit date: 2017-01-04 Release date: 2018-05-02 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Surface Properties Determining Passage Rates of Proteins through Nuclear Pores. Cell, 174, 2018
5WYJ	Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S ribosomal RNA, 40S ribosomal protein S1-A, ... Authors: Ye, K, Zhu, X, Sun, Q. Deposit date: 2017-01-13 Release date: 2017-03-29 Last modified: 2019-10-09 Method: ELECTRON MICROSCOPY (8.7 Å) Cite: Molecular architecture of the 90S small subunit pre-ribosome. Elife, 6, 2017
5X6I	Crystal structure of B. subtilis adenylate kinase variant Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, CALCIUM ION, ... Authors: Moon, S, Bae, E. Deposit date: 2017-02-22 Release date: 2018-02-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability. Struct Dyn., 6, 2019
5X6J	Crystal structure of B. globisporus adenylate kinase variant Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, ZINC ION Authors: Moon, S, Bae, E. Deposit date: 2017-02-22 Release date: 2018-02-28 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural and mutational analyses of psychrophilic and mesophilic adenylate kinases highlight the role of hydrophobic interactions in protein thermal stability. Struct Dyn., 6, 2019
5N9O	EGFP(enhanced green fluorescent protein) mutant - L232H Descriptor: 3,6,9,12,15-PENTAOXAHEPTADECAN-1-OL, Green fluorescent protein Authors: Kachalova, G.S, Popov, A.P, Simanovskaya, A.A, Krukova, M.V, Lipkin, A.V. Deposit date: 2017-02-26 Release date: 2018-03-21 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Structure of EGFP(enhanced green fluorescent protein) mutant - L232H at 0.153 nm To Be Published
5NDG	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. Deposit date: 2017-03-08 Release date: 2017-12-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDW	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. Deposit date: 2017-03-09 Release date: 2017-12-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5NDV	Crystal structure of Paromomycin bound to the yeast 80S ribosome Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. Deposit date: 2017-03-09 Release date: 2017-12-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V6F	Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae bound to Mannotriose Descriptor: Hemolysin-related protein, SULFATE ION, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose Authors: De, S, Kaus, K, Sinclair, S, Case, B.C, Olson, R. Deposit date: 2017-03-16 Release date: 2018-01-17 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins. PLoS Pathog., 14, 2018
5V6K	Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae Bound to N-acetylglucosaminyl-beta-1,2-mannose Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, GLYCEROL, Hemolysin-related protein Authors: De, S, Kaus, K, Sinclair, S, Case, B.C, Olson, R. Deposit date: 2017-03-16 Release date: 2018-01-31 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins. PLoS Pathog., 14, 2018
5V6C	Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae Descriptor: GLYCEROL, Hemolysin-related protein Authors: De, S, Kaus, K, Sinclair, S, Case, B.C, Olson, R. Deposit date: 2017-03-16 Release date: 2018-01-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis of mammalian glycan targeting by Vibrio cholerae cytolysin and biofilm proteins. PLoS Pathog., 14, 2018
5NHN	Super-Folder Green Fluorescent Protein Artificiall dimer linked via 148 position Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Green fluorescent protein, ... Authors: Worthy, H.L, Rizkallah, P.J. Deposit date: 2017-03-22 Release date: 2018-09-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Positive functional synergy of structurally integrated artificial protein dimers assembled by Click chemistry Commun Chem, 2019
5NI3	sfGFP 204-204 mutant dimer Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... Authors: Worthy, H.L, Rizkallah, P.J. Deposit date: 2017-03-23 Release date: 2018-09-12 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.28 Å) Cite: Association of Fluorescent Protein Pairs and Its Significant Impact on Fluorescence and Energy Transfer Adv Sci, 2020
5NOC	Solution NMR Structure of the C-terminal domain of ParB (Spo0J) Descriptor: Stage 0 sporulation protein J Authors: Higman, V.A, Fisher, G.L.M, Dillingham, M.S, Crump, M.P. Deposit date: 2017-04-11 Release date: 2017-12-13 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: The structural basis for dynamic DNA binding and bridging interactions which condense the bacterial centromere. Elife, 6, 2017
5XG7	Galectin-13/Placental Protein 13 crystal structure Descriptor: Galactoside-binding soluble lectin 13 Authors: Su, J.Y, Wang, Y. Deposit date: 2017-04-12 Release date: 2018-01-31 Last modified: 2024-04-17 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Galectin-13, a different prototype galectin, does not bind beta-galacto-sides and forms dimers via intermolecular disulfide bridges between Cys-136 and Cys-138 Sci Rep, 8, 2018
5XG8	Galectin-13/Placental Protein 13 variant R53H crystal structure Descriptor: GLYCEROL, Galactoside-binding soluble lectin 13 Authors: Wang, Y, Su, J.Y. Deposit date: 2017-04-12 Release date: 2018-01-31 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Galectin-13, a different prototype galectin, does not bind beta-galacto-sides and forms dimers via intermolecular disulfide bridges between Cys-136 and Cys-138 Sci Rep, 8, 2018

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