PDB: 45176 resultsInfo pagesStatus searchChemie searchBIRD

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8JFS	Phosphate bound acylphosphatase from Deinococcus radiodurans at 1 Angstrom resolution Descriptor: 1,2-ETHANEDIOL, Acylphosphatase, CITRIC ACID, ... Authors: Khakerwala, Z, Kumar, A, Makde, R.D. Deposit date: 2023-05-18 Release date: 2023-06-14 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1 Å) Cite: Crystal structure of phosphate bound Acyl phosphatase mini-enzyme from Deinococcus radiodurans at 1 angstrom resolution. Biochem.Biophys.Res.Commun., 671, 2023
8IU9	Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with glucose Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, alpha-D-glucopyranose, ... Authors: Nakamura, S, Miyazaki, T. Deposit date: 2023-03-24 Release date: 2023-06-14 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria. J.Biol.Chem., 299, 2023
8IUB	Crystal structure of GH66 endodextranase from Flavobacterium johnsoniae in complex with isomaltotriose Descriptor: Candidate dextranase Glycoside hydrolase family 66, SODIUM ION, SULFATE ION, ... Authors: Nakamura, S, Miyazaki, T. Deposit date: 2023-03-24 Release date: 2023-06-14 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Bacteroidota polysaccharide utilization system for branched dextran exopolysaccharides from lactic acid bacteria. J.Biol.Chem., 299, 2023
7N16	Structure of TAX-4_R421W apo closed state Descriptor: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Cyclic nucleotide-gated cation channel, SODIUM ION Authors: Zheng, X, Li, H, Hu, Z, Su, D, Yang, J. Deposit date: 2021-05-27 Release date: 2022-03-16 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural and functional characterization of an achromatopsia-associated mutation in a phototransduction channel. Commun Biol, 5, 2022
8FHA	Intramolecular ester bond-containing repeat domain 1 from Suipraoptans intestinalis adhesin Descriptor: Adhesin, CALCIUM ION, SODIUM ION Authors: Jin, S, Young, P.G, Squire, C.J. Deposit date: 2022-12-13 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Intramolecular ester bond-containing repeat domain from Suipraoptans intestinalis adhesin To Be Published
8J5A	Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A) Descriptor: Ferritin heavy chain, SODIUM ION Authors: Kawakami, K, Maki-Yonekura, S, Hamaguchi, T, Takaba, K, Yonekura, K. Deposit date: 2023-04-21 Release date: 2023-07-12 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (1.19 Å) Cite: Measurement of charges and chemical bonding in a cryo-EM structure. Commun Chem, 6, 2023
4HZY	Crystal structure of influenza A neuraminidase N3-H274Y Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neuraminidase Authors: Li, Q, Qi, J, Vavricka, C.J, Gao, G.F. Deposit date: 2012-11-16 Release date: 2013-11-06 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.598 Å) Cite: Functional and structural analysis of influenza virus neuraminidase N3 offers further insight into the mechanisms of oseltamivir resistance. J.Virol., 87, 2013
8GYR	Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Kumar, P, Akif, M. Deposit date: 2022-09-23 Release date: 2023-06-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Crystal structure of a variable region segment of Leptospira host-interacting outer surface protein, LigA, reveals the orientation of Ig-like domains. Int.J.Biol.Macromol., 244, 2023
7MZ2	Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(4DU)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-23 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.088 Å) Cite: Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP To Be Published
7MZ1	Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(4DU)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-23 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.175 Å) Cite: Structure of human DNA polymerase beta complexed with dzA in the template base paired with incoming non-hydrolyzable TTP To Be Published
7MZ0	Structure of human DNA polymerase beta complexed with dzA as the template base in a 1-nucleotide gapped DNA Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*(4DU)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-23 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.021 Å) Cite: Structure Of Human Dna Polymerase Beta Complexed With dzA As The Template Base In A 1-Nucleotide Gapped Dna To Be Published
7MZ4	Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP Descriptor: 5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]thymidine, DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-24 Release date: 2022-06-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.076 Å) Cite: Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP To Be Published
7MZ8	Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) at N-1 of the template base paired with incoming dTTP Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*CP*GP*AP*CP*GP*(DZM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*T)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-24 Release date: 2022-06-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure Of Human Dna Polymerase Beta Complexed With 8Oa As The Template Base In A 1-Nucleotide Gapped Dna To Be Published
7MZ3	Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*(DZM)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Koag, M.-C, Lee, S. Deposit date: 2021-05-24 Release date: 2022-06-01 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.418 Å) Cite: Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) as the template base in a 1-nucleotide gapped DNA To Be Published
7N4P	Crystal Structure of Lizard Cadherin-23 EC1-2 Descriptor: CALCIUM ION, Cadherin 23, SODIUM ION Authors: Nisler, C.R, Sotomayor, M. Deposit date: 2021-06-04 Release date: 2022-06-15 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.097 Å) Cite: Interpreting the Evolutionary Echoes of a Protein Complex Essential for Inner-Ear Mechanosensation. Mol.Biol.Evol., 40, 2023
8GN9	SPFH domain of Pyrococcus horikoshii stomatin Descriptor: SODIUM ION, Stomatin homolog PH1511 Authors: Komatsu, T, Matsui, I, Yokoyama, H. Deposit date: 2022-08-23 Release date: 2022-12-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and mutational studies suggest key residues to determine whether stomatin SPFH domains form dimers or trimers. Biochem Biophys Rep, 32, 2022
8J6G	Neutron structure of copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pD 9.0 Descriptor: 2-PHENYLETHYLAMINE, COPPER (II) ION, Phenylethylamine oxidase, ... Authors: Murakawa, T, Okajima, T. Deposit date: 2023-04-25 Release date: 2023-09-20 Method: NEUTRON DIFFRACTION (1.09 Å), X-RAY DIFFRACTION Cite: Neutron Crystallography of a Semiquinone Radical Intermediate of Copper Amine Oxidase Reveals a Substrate-Assisted Conformational Change of the Peptidyl Quinone Cofactor Acs Catalysis, 2023
8GPZ	Crystal structure of BRD4 bromodomain 1 (BD1) in complex with C239-0012 Descriptor: 3-methyl-6-(4-methylpiperidin-1-yl)-[1,2,4]triazolo[4,3-b]pyridazine, Bromodomain-containing protein 4, FORMIC ACID, ... Authors: Park, T.H, Lee, B.I. Deposit date: 2022-08-27 Release date: 2023-01-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.528 Å) Cite: Crystal structure of [1,2,4]triazolo[4,3-b]pyridazine derivatives as BRD4 bromodomain inhibitors and structure-activity relationship study. Sci Rep, 13, 2023
8GQ0	Crystal structure of BRD4 bromodomain 1 (BD1) in complex with STL233497 Descriptor: Bromodomain-containing protein 4, FORMIC ACID, GLYCEROL, ... Authors: Park, T.H, Lee, B.I. Deposit date: 2022-08-27 Release date: 2023-01-18 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.44 Å) Cite: Crystal structure of [1,2,4]triazolo[4,3-b]pyridazine derivatives as BRD4 bromodomain inhibitors and structure-activity relationship study. Sci Rep, 13, 2023
7N4K	6218 TCR in complex with H2-Db PA 224 Descriptor: Beta-2-microglobulin, Fusion protein of T cell receptor alpha variable 21-DV12 and T-cell receptor, sp3.4 alpha chain, ... Authors: Szeto, C, Gras, S. Deposit date: 2021-06-04 Release date: 2022-07-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus. Nat Commun, 13, 2022
7N5C	6218 TCR in complex with H2Db PA with an engineered TCR-pMHC disulfide bond Descriptor: Beta-2-microglobulin, Fusion protein of T cell receptor alpha variable 21-DV12 with T-cell receptor, sp3.4 alpha chain, ... Authors: Szeto, C, Gras, S. Deposit date: 2021-06-05 Release date: 2022-07-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus. Nat Commun, 13, 2022
7N5P	6218 TCR in complex with H2-Db PA224-233 with a cysteine mutant Descriptor: Beta-2-microglobulin, Fusion protein of T cell receptor alpha variable 21-DV12 and T-cell receptor, sp3.4 alpha chain, ... Authors: Szeto, C, Gras, S. Deposit date: 2021-06-06 Release date: 2022-07-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus. Nat Commun, 13, 2022
7N5Q	Peptide-MHC complex of mouse H2-Db presenting PA224 with E4C mutation Descriptor: ACETATE ION, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ... Authors: Szeto, C, Gras, S. Deposit date: 2021-06-06 Release date: 2022-07-20 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Covalent TCR-peptide-MHC interactions induce T cell activation and redirect T cell fate in the thymus. Nat Commun, 13, 2022
8G62	Papain-Like Protease of SARS CoV-2 in complex with remodilin NCGC 390004 Descriptor: 3-methoxy-5-(1-methylpiperidin-4-yl)-N-[4-(pyrrolidine-1-sulfonyl)phenyl]benzamide, ACETATE ION, CHLORIDE ION, ... Authors: Osipiuk, J, Tesar, C, Endres, M, Jedrzejczak, R, Luci, D, Kales, S, Simeonov, A, Rai, G, Drayman, N, Tay, S, Oakes, S, Rosner, M, Chen, B, Dulin, N, Solway, J, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID) Deposit date: 2023-02-14 Release date: 2023-02-22 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.17 Å) Cite: Papain-Like Protease of SARS CoV-2 in complex with remodilin NCGC 390004 To Be Published
7NBB	Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3 Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ... Authors: Lange, S.M, Kulathu, Y. Deposit date: 2021-01-26 Release date: 2022-08-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3 To Be Published

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