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6Y2S
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BU of 6y2s by Molmil
Escherichia coli R318A RnlA endoribonuclease (single alanine mutant of RnlA)
Descriptor: mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-02-17
Release date:2021-03-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.79 Å)
Cite:Quaternary structure changes control ribonuclease activity of RnlA toxin.
To Be Published
4ILU
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BU of 4ilu by Molmil
Crystal structure of Mycobacterium tuberculosis CarD
Descriptor: RNA polymerase-binding transcription factor CarD, SULFATE ION
Authors:Thakur, K.G, Kaur, G.
Deposit date:2013-01-01
Release date:2013-10-30
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of Mycobacterium tuberculosis CarD, an essential RNA polymerase binding protein, reveals a quasidomain-swapped dimeric structural architecture.
Proteins, 82, 2014
6Y2R
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BU of 6y2r by Molmil
Escherichia coli R255A RnlA endoribonuclease (single alanine mutant of RnlA)
Descriptor: mRNA endoribonuclease toxin LS
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2020-02-17
Release date:2021-05-12
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.89 Å)
Cite:Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA.
Nucleic Acids Res., 49, 2021
2N4L
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BU of 2n4l by Molmil
Solution Structure of the HIV-1 Intron Splicing Silencer and its Interactions with the UP1 Domain of hnRNP A1
Descriptor: RNA (53-MER)
Authors:Tolbert, B.S, Jain, N, Morgan, C.E, Rife, B.D, Salemi, M.
Deposit date:2015-06-23
Release date:2015-12-02
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution Structure of the HIV-1 Intron Splicing Silencer and Its Interactions with the UP1 Domain of Heterogeneous Nuclear Ribonucleoprotein (hnRNP) A1.
J.Biol.Chem., 291, 2016
3WHO
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BU of 3who by Molmil
X-ray-Crystallographic Structure of an RNase Po1 Exhibiting Anti-tumor Activity
Descriptor: Guanyl-specific ribonuclease Po1
Authors:Kobayashi, H, Katsurtani, T, Hara, Y, Motoyoshi, N, Itagaki, T, Akita, F, Higashiura, A, Yamada, Y, Suzuki, M, Inokuchi, N.
Deposit date:2013-08-30
Release date:2014-07-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:X-ray crystallographic structure of RNase Po1 that exhibits anti-tumor activity.
Biol.Pharm.Bull., 37, 2014
3CLJ
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BU of 3clj by Molmil
Structure of the RNA polymerase II CTD-interacting domain of Nrd1
Descriptor: GLYCEROL, Protein NRD1, SULFATE ION
Authors:Vasiljeva, L, Kim, M, Mutschler, H, Buratowski, S, Meinhart, A.
Deposit date:2008-03-19
Release date:2008-07-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Nrd1-Nab3-Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain.
Nat.Struct.Mol.Biol., 15, 2008
2CPE
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BU of 2cpe by Molmil
Solution structure of the RNA recognition motif of Ewing Sarcoma(EWS) protein
Descriptor: RNA-binding protein EWS
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the RNA recognition motif of Ewing Sarcoma(EWS) protein
To be Published
4DK3
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BU of 4dk3 by Molmil
Structure of Editosome protein
Descriptor: RNA-editing complex protein MP81, single domain antibody VHH
Authors:Park, Y.-J, Hol, W.
Deposit date:2012-02-03
Release date:2012-07-04
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2.
Nucleic Acids Res., 40, 2012
4DKA
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BU of 4dka by Molmil
Structure of Editosome protein
Descriptor: RNA-editing complex protein MP81, SODIUM ION, single domain antibody VHH
Authors:Park, Y.-J, Hol, W.
Deposit date:2012-02-03
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2.
Nucleic Acids Res., 40, 2012
6EZ4
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BU of 6ez4 by Molmil
NMR structure of the C-terminal domain of the human RPAP3 protein
Descriptor: RNA polymerase II-associated protein 3
Authors:Fabre, P, Chagot, M.E, Bragantini, B, Manival, X, Quinternet, M.
Deposit date:2017-11-14
Release date:2018-04-18
Last modified:2024-01-17
Method:SOLUTION NMR
Cite:The RPAP3-Cterminal domain identifies R2TP-like quaternary chaperones.
Nat Commun, 9, 2018
1FHT
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BU of 1fht by Molmil
RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN U1A117, NMR, 43 STRUCTURES
Descriptor: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
Authors:Allain, F.H.-T, Gubser, C.C, Howe, P.W.A, Nagai, K, Neuhaus, D, Varani, G.
Deposit date:1996-02-21
Release date:1996-07-11
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal RNP domain of U1A protein: the role of C-terminal residues in structure stability and RNA binding.
J.Mol.Biol., 257, 1996
4DK6
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BU of 4dk6 by Molmil
Structure of Editosome protein
Descriptor: RNA-editing complex protein MP81, single domain antibody VHH
Authors:Park, Y.-J, Hol, W.
Deposit date:2012-02-03
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2.
Nucleic Acids Res., 40, 2012
8K8B
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BU of 8k8b by Molmil
Solution structure of a hairpin RNA with the UUCGA loop
Descriptor: RNA (5'-R(*GP*GP*AP*UP*CP*CP*UP*UP*UP*CP*GP*AP*GP*GP*GP*AP*UP*CP*C)-3')
Authors:Ichijo, R, Kawai, G.
Deposit date:2023-07-29
Release date:2024-06-05
Method:SOLUTION NMR
Cite:NMR analysis of a loop-bulge structure of UUCGA pentaloop.
Biochem.Biophys.Res.Commun., 691, 2024
5MRX
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BU of 5mrx by Molmil
27-nt SRL with a 5-hydroxymethyl cytidine modification
Descriptor: RNA (27-MER)
Authors:Ennifar, E, Micura, R.
Deposit date:2016-12-28
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.851 Å)
Cite:Synthesis, Thermodynamic Properties, and Crystal Structure of RNA Oligonucleotides Containing 5-Hydroxymethylcytosine
J.Org.Chem., 2017
418D
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BU of 418d by Molmil
5'-R(*GP*UP*GP*CP*AP*CP*A)-D(P*C)-3'
Descriptor: RNA (5'-R(*GP*UP*GP*CP*AP*CP*AP*C)-3')
Authors:Mitra, S.N, Biswas, R, Shi, K, Sundaralingam, M.
Deposit date:1998-08-12
Release date:2003-06-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of an RNA duplex [r(gugcaca)dC]2 with 3'-dinucleoside overhangs forming a superhelix.
J.Biomol.Struct.Dyn., 11, 2000
2DHG
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BU of 2dhg by Molmil
Solution structure of the C-terminal RNA recognition motif in tRNA selenocysteine associated protein
Descriptor: tRNA selenocysteine associated protein (SECP43)
Authors:Imai, T, Tsuda, K, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-03-23
Release date:2006-09-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the C-terminal RNA recognition motif in tRNA selenocysteine associated protein
To be Published
2KDV
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BU of 2kdv by Molmil
Solution structure of RNA Pyrophosphohydrolase RppH from Escherichia coli
Descriptor: RNA pyrophosphohydrolase
Authors:Bi, Y, Li, H, Jin, C.
Deposit date:2009-01-19
Release date:2010-01-26
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of RNA pyrophosphohydrolase RppH from Escherichia coli
To be Published
2R7O
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BU of 2r7o by Molmil
Crystal Structure of VP1 apoenzyme of Rotavirus SA11 (N-terminal hexahistidine-tagged)
Descriptor: RNA-dependent RNA polymerase
Authors:Lu, X, Harrison, S.C, Tao, Y.J, Patton, J.T, Nibert, M.L.
Deposit date:2007-09-09
Release date:2008-07-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1.
Structure, 16, 2008
3N4K
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BU of 3n4k by Molmil
Putative RNA methyltransferase from Yersinia pestis in complex with S-ADENOSYL-L-HOMOCYSTEINE.
Descriptor: RNA methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Osipiuk, J, Maltseva, N, Peterson, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-05-21
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
To be Published
2R7Q
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BU of 2r7q by Molmil
Crystal Structure of VP1 apoenzyme of Rotavirus SA11 (C-terminal hexahistidine-tagged)
Descriptor: RNA-dependent RNA polymerase
Authors:Lu, X, Harrison, S.C, Tao, Y.J, Patton, J.T, Nibert, M.L.
Deposit date:2007-09-09
Release date:2008-07-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1.
Structure, 16, 2008
2K9L
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BU of 2k9l by Molmil
Structure of the Core Binding Domain of sigma54
Descriptor: RNA polymerase sigma factor RpoN
Authors:Hong, E, Wemmer, D.
Deposit date:2008-10-19
Release date:2009-05-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of the RNA polymerase core-binding domain of sigma(54) reveals a likely conformational fracture point
J.Mol.Biol., 390, 2009
3N4J
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BU of 3n4j by Molmil
Putative RNA methyltransferase from Yersinia pestis
Descriptor: RNA methyltransferase, SULFATE ION
Authors:Osipiuk, J, Maltseva, N, Peterson, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-05-21
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:X-ray crystal structure of putative RNA methyltransferase from Yersinia pestis.
To be Published
4NJ5
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BU of 4nj5 by Molmil
Crystal structure of SUVH9
Descriptor: Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9, ZINC ION
Authors:Du, J, Patel, D.J.
Deposit date:2013-11-08
Release date:2014-01-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.
Nature, 507, 2014
2XHU
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BU of 2xhu by Molmil
HCV-J4 NS5B Polymerase Orthorhombic Crystal Form
Descriptor: RNA-directed RNA polymerase, SULFATE ION
Authors:Harrus, D, Ahmed-El-Sayed, N, Simister, P.C, Miller, S, Triconnet, M, Hagedorn, C.H, Mahias, K, Rey, F.A, Astier-Gin, T, Bressanelli, S.
Deposit date:2010-06-21
Release date:2010-08-04
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.287 Å)
Cite:Further Insights Into the Roles of GTP and the C- Terminus of the Hepatitis C Virus Polymerase in the Initiation of RNA Synthesis
J.Biol.Chem., 285, 2010
1WF1
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BU of 1wf1 by Molmil
Solution structure of RRM domain in RNA-binding protein NP_057951
Descriptor: RNA-binding protein Raly
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Terada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-25
Release date:2004-11-25
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of RRM domain in RNA-binding protein NP_057951
To be Published

222415

PDB entries from 2024-07-10

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