PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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1BRH	BARNASE MUTANT WITH LEU 14 REPLACED BY ALA Descriptor: BARNASE, ZINC ION Authors: Cramer, P.C, Buckle, A, Fersht, A. Deposit date: 1995-03-09 Release date: 1995-07-10 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural and energetic responses to cavity-creating mutations in hydrophobic cores: observation of a buried water molecule and the hydrophilic nature of such hydrophobic cavities. Biochemistry, 35, 1996
2K95	Solution structure of the wild-type P2B-P3 pseudoknot of human telomerase RNA Descriptor: Telomerase RNA P2b-P3 pseudoknot Authors: Kim, N.-K, Zhang, Q, Zhou, J, Theimer, C.A, Peterson, R.D, Feigon, J. Deposit date: 2008-09-29 Release date: 2008-11-25 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution Structure and Dynamics of the Wild-type Pseudoknot of Human Telomerase RNA. J.Mol.Biol., 384, 2008
2K96	Solution structure of the RDC-refined P2B-P3 pseudoknot from human telomerase RNA (delta U177) Descriptor: TELOMERASE RNA P2B-P3 PSEUDOKNOT Authors: Kim, N.-K, Zhang, Q, Zhou, J, Theimer, C.A, Peterson, R.D, Feigon, J. Deposit date: 2008-09-29 Release date: 2008-11-25 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution Structure and Dynamics of the Wild-type Pseudoknot of Human Telomerase RNA. J.Mol.Biol., 384, 2008
1RGO	Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d Descriptor: Butyrate response factor 2, RNA (5'-R(*UP*UP*AP*UP*UP*UP*AP*UP*U)-3'), ZINC ION Authors: Hudson, B.P, Martinez-Yamout, M.A, Dyson, H.J, Wright, P.E. Deposit date: 2003-11-12 Release date: 2004-03-02 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Recognition of the mRNA AU-rich element by the zinc finger domain of TIS11d. NAT.STRUCT.MOL.BIOL., 11, 2004
4E5C	Crystal Structure of 19mer double-helical RNA containing CUG/CGG-repeats Descriptor: 5'-R(P*GP*GP*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*UP*GP*CP*UP*GP*CP*C)-3' Authors: Malinina, L, Popov, A, Tamjar, J. Deposit date: 2012-03-14 Release date: 2012-07-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural dynamics of double-helical RNAs composed of CUG/CUG- and CUG/CGG-repeats. J.Biomol.Struct.Dyn., 30, 2012
2PMZ	Archaeal RNA polymerase from Sulfolobus solfataricus Descriptor: DNA-directed RNA polymerase subunit A, DNA-directed RNA polymerase subunit A", DNA-directed RNA polymerase subunit B, ... Authors: Murakami, K.S. Deposit date: 2007-04-23 Release date: 2008-02-12 Last modified: 2017-10-18 Method: X-RAY DIFFRACTION (3.4 Å) Cite: The X-ray crystal structure of RNA polymerase from Archaea Nature, 451, 2008
1D5H	Rnase s(f8a). mutant ribonucleasE S. Descriptor: RNASE S, S PEPTIDE, SULFATE ION Authors: Ratnaparkhi, G.S, Varadarajan, R. Deposit date: 1999-10-07 Release date: 1999-10-20 Last modified: 2018-03-14 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Thermodynamic and structural studies of cavity formation in proteins suggest that loss of packing interactions rather than the hydrophobic effect dominates the observed energetics. Biochemistry, 39, 2000
28SP	NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA Descriptor: CONSERVED MOTIF IN SRP RNA Authors: Schmitz, U, James, T.L, Lukavsky, P, Walter, P. Deposit date: 1999-04-07 Release date: 1999-04-12 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure of the most conserved internal loop in SRP RNA. Nat.Struct.Biol., 6, 1999
28SR	NMR STRUCTURE OF THE MOST CONSERVED RNA MOTIF IN SRP RNA Descriptor: SRP DOMAIN IV Authors: Schmitz, U, James, T.L, Lukavsky, P, Walter, P. Deposit date: 1999-04-15 Release date: 1999-04-20 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure of the most conserved internal loop in SRP RNA. Nat.Struct.Biol., 6, 1999
3QJJ	One RAMP protein binding different RNA substrates Descriptor: Putative uncharacterized protein PH0350, RNA (5'-R(*GP*UP*UP*GP*AP*AP*AP*UP*CP*AP*GP*A)-3') Authors: Wang, R, Zheng, H, Preamplume, G, Li, H. Deposit date: 2011-01-29 Release date: 2012-02-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.8049 Å) Cite: Cooperative and Specific Binding of a RAMP Protein to Single-stranded CRISPR Repeat RNA To be Published
2RQA	Solution structure of LGP2 CTD Descriptor: ATP-dependent RNA helicase DHX58, ZINC ION Authors: Takahasi, K, Kumeta, H, Tsuduki, N, Narita, R, Shigemoto, T, Hirai, R, Yoneyama, M, Horiuchi, M, Ogura, K, Fujita, T, Fuyuhiko, I. Deposit date: 2009-03-17 Release date: 2009-05-05 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Solution Structures of Cytosolic RNA Sensor MDA5 and LGP2 C-terminal Domains: IDENTIFICATION OF THE RNA RECOGNITION LOOP IN RIG-I-LIKE RECEPTORS J.Biol.Chem., 284, 2009
3MJ0	Crystal Structure of Drosophia Ago-PAZ domain in complex with 3'-end 2'-O-methylated RNA Descriptor: Protein argonaute-2, RNA (5'-R(*CP*GP*UP*UP*AP*CP*GP*CP*(OMU))-3') Authors: Huang, Y, Ding, L, Ma, J. Deposit date: 2010-04-12 Release date: 2011-05-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.306 Å) Cite: Crystal Structure of drosophila Ago2 PAZ domain in complex with 3'-end 2'-O-methylated RNA To be Published
7EEY	The structure of the N-terminal doamin of the Schizosaccharomyces pombe Tad2 adenosine deaminase Descriptor: SULFATE ION, tRNA-specific adenosine deaminase subunit tad2 Authors: Xie, W, Liu, X, Zhou, J. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Functional and structural investigation of N-terminal domain of the SpTad2/3 heterodimeric tRNA deaminase. Comput Struct Biotechnol J, 19, 2021
1EF4	SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM Descriptor: DNA-DIRECTED RNA POLYMERASE, ZINC ION Authors: Mackereth, C.D, Arrowsmith, C.H, Edwards, A.M, Mcintosh, L.P, Northeast Structural Genomics Consortium (NESG) Deposit date: 2000-02-07 Release date: 2000-06-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum. Proc.Natl.Acad.Sci.USA, 97, 2000
7XIU	Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ZINC ION, ... Authors: Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T. Deposit date: 2022-04-14 Release date: 2022-04-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity. J.Chem.Inf.Model., 62, 2022
7XIT	Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ZINC ION, ... Authors: Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T. Deposit date: 2022-04-14 Release date: 2022-04-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.18 Å) Cite: Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity. J.Chem.Inf.Model., 62, 2022
7XJ7	Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ZINC ION, ... Authors: Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T. Deposit date: 2022-04-15 Release date: 2022-04-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity. J.Chem.Inf.Model., 62, 2022
7XJ5	Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ZINC ION, ... Authors: Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T. Deposit date: 2022-04-15 Release date: 2022-04-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity. J.Chem.Inf.Model., 62, 2022
7XJ4	Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester Descriptor: MANGANESE (II) ION, Reverse Transcriptase RNase H domain, S-[5-[(E)-2-phenylethenyl]-1,3,4-oxadiazol-2-yl] 5-nitrothiophene-2-carbothioate, ... Authors: Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T. Deposit date: 2022-04-15 Release date: 2022-04-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity. J.Chem.Inf.Model., 62, 2022
7XIS	Crystal structure of engineered HIV-1 Reverse Transcriptase RNase H domain complexed with nitrofuran methoxy(methoxycarbonyl)phenyl ester Descriptor: (2-methoxy-4-methoxycarbonyl-phenyl) 5-nitrofuran-2-carboxylate, MANGANESE (II) ION, Reverse Transcriptase RNase H domain, ... Authors: Lu, H, Komukai, Y, Usami, K, Guo, Y, Qiao, X, Nukaga, M, Hoshino, T. Deposit date: 2022-04-14 Release date: 2022-04-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.88 Å) Cite: Computational and Crystallographic Analysis of Binding Structures of Inhibitory Compounds for HIV-1 RNase H Activity. J.Chem.Inf.Model., 62, 2022
1UUI	NMR structure of a synthetic small molecule, rbt158, bound to HIV-1 TAR RNA Descriptor: 4-[AMINO(IMINO)METHYL]-1-[2-(3-AMMONIOPROPOXY)-5-METHOXYBENZYL]PIPERAZIN-1-IUM, 5'-R(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP* CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C)-3' Authors: Davis, B, Afshar, M, Varani, G, Karn, J, Murchie, A.I.H, Lentzen, G, Drysdale, M.J, Potter, A.J, Bower, J, Aboul-Ela, F. Deposit date: 2003-12-19 Release date: 2004-02-12 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Rational Design of Inhibitors of HIV-1 Tar RNA Through the Stabilisation of Electrostatic "Hot Spots" J.Mol.Biol., 336, 2004
1ME1	Chimeric hairpin with 2',5'-linked RNA loop and RNA stem Descriptor: 5'-R(*GP*GP*AP*CP*(U25)P*(U25)P*(C25)P*(5GP)P*GP*UP*CP*C)-3' Authors: Denisov, A.Y, Hannoush, R.N, Gehring, K, Damha, M.J. Deposit date: 2002-08-07 Release date: 2003-08-19 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A Novel RNA Motif Based on the Structure of Unusually Stable 2',5'-Linked r(UUCG) Loops J.AM.CHEM.SOC., 125, 2003
3QJP	An RAMP protein binding different RNA substrates Descriptor: Putative uncharacterized protein PH0350, RNA (5'-R(P*UP*AP*GP*UP*UP*UP*AP*A)-3') Authors: Wang, R, Zheng, H, Preamplume, G, Li, H. Deposit date: 2011-01-30 Release date: 2012-02-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.2986 Å) Cite: Cooperative and Specific Binding of a RAMP Protein to Single-stranded CRISPR Repeat RNA To be Published
7EEO	Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA Descriptor: COBALT HEXAMMINE(III), DNA/RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.701 Å) Cite: Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA To Be Published
7EEN	Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA Descriptor: CALCIUM ION, DNA/RNA (27-MER) Authors: Kondo, J, Sekiguchi, S. Deposit date: 2021-03-19 Release date: 2022-03-23 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA To Be Published

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