PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

---

1BNO	NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, MINIMIZED AVERAGE STRUCTURE Descriptor: DNA POLYMERASE BETA Authors: Liu, D.-J, Prasad, R, Wilson, S.H, Derose, E.F, Mullen, G.P. Deposit date: 1996-04-25 Release date: 1996-12-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface. Biochemistry, 35, 1996
1BNP	NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF DNA POLYMERASE BETA, 55 STRUCTURES Descriptor: DNA POLYMERASE BETA Authors: Liu, D.-J, Prasad, R, Wilson, S.H, Derose, E.F, Mullen, G.P. Deposit date: 1996-04-25 Release date: 1996-12-07 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Three-dimensional solution structure of the N-terminal domain of DNA polymerase beta and mapping of the ssDNA interaction interface. Biochemistry, 35, 1996
1JN3	FIDELITY PROPERTIES AND STRUCTURE OF M282L MUTATOR MUTANT OF DNA POLYMERASE: SUBTLE STRUCTURAL CHANGES INFLUENCE THE MECHANISM OF NUCLEOTIDE DISCRIMINATION Descriptor: DNA POLYMERASE BETA Authors: Conn, D.A, Sweasy, J.B, Jaeger, J. Deposit date: 2001-07-22 Release date: 2001-08-03 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.35 Å) Cite: A DNA polymerase beta mutator mutant with reduced nucleotide discrimination and increased protein stability Biochemistry, 40, 2001
5CPJ	Nucleosome containing methylated Sat2R DNA Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Osakabe, A, Arimura, Y, Adachi, F, Maehara, K, Ohkawa, Y, Kurumizaka, H. Deposit date: 2015-07-21 Release date: 2015-10-28 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.15 Å) Cite: Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA. Open Biology, 5, 2015
8OYR	DNA Major Groove Binding by lambda-[Ru(phen)2(phi)]2+ Descriptor: DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'), STRONTIUM ION, ruthenium polypyridyl complex (lambda enantiomer) Authors: Prieto-Otoya, T.D, Cardin, C.J, McQuaid, K.T, Paterson, N.G. Deposit date: 2023-05-05 Release date: 2024-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Probing a Major DNA Weakness: Resolving the Groove and Sequence Selectivity of the Diimine Complex Lambda-[Ru(phen) 2 phi] 2. Angew.Chem.Int.Ed.Engl., 63, 2024
6F57	Crystal structure of DNMT3A-DNMT3L in complex with single CpG-containing DNA Descriptor: DNA (5'-D(*AP*GP*AP*GP*CP*GP*CP*AP*TP*G)-3'), DNA (5'-D(*CP*AP*TP*GP*ZP*GP*CP*TP*CP*T)-3'), DNA (cytosine-5)-methyltransferase 3-like, ... Authors: Zhang, Z.M, Song, J. Deposit date: 2017-12-01 Release date: 2018-01-31 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.098 Å) Cite: Structural basis for DNMT3A-mediated de novo DNA methylation. Nature, 554, 2018
5CPK	Nucleosome containing methylated Sat2L DNA Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Osakabe, A, Arimura, Y, Adachi, F, Maehara, K, Ohkawa, Y, Kurumizaka, H. Deposit date: 2015-07-21 Release date: 2015-10-28 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.632 Å) Cite: Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA. Open Biology, 5, 2015
5CPI	Nucleosome containing unmethylated Sat2R DNA Descriptor: DNA (146-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... Authors: Osakabe, A, Arimura, Y, Adachi, F, Maehara, K, Ohkawa, Y, Kurumizaka, H. Deposit date: 2015-07-21 Release date: 2015-10-28 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.902 Å) Cite: Influence of DNA methylation on positioning and DNA flexibility of nucleosomes with pericentric satellite DNA. Open Biology, 5, 2015
4GRE	DNA holliday junction stabilized by iodine halogen bond. I2J Construct of related reference Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(IOU)P*CP*GP*G)-3') Authors: Ho, P.S, Carter, M. Deposit date: 2012-08-24 Release date: 2013-07-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions. Biochemistry, 52, 2013
4GS2	DNA Holliday junction stabilized by iodine halogen bond. I1J construct in related reference. Descriptor: DNA (5'-D(*CP*CP*GP*AP*TP*AP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*TP*AP*(5IU)P*CP*GP*G)-3') Authors: Ho, P.S, Carter, M. Deposit date: 2012-08-27 Release date: 2013-07-31 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Enthalpy-entropy compensation in biomolecular halogen bonds measured in DNA junctions. Biochemistry, 52, 2013
4KPY	DNA binding protein and DNA complex structure Descriptor: DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*C)-3'), DNA (5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3'), DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3'), ... Authors: Sheng, G, Zhao, H, Wang, J, Rao, Y, Wang, Y. Deposit date: 2013-05-14 Release date: 2014-01-29 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.406 Å) Cite: Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage. Proc.Natl.Acad.Sci.USA, 111, 2014
4E2I	The Complex Structure of the SV40 Helicase Large T Antigen and p68 Subunit of DNA Polymerase Alpha-Primase Descriptor: DNA polymerase alpha subunit B, Large T antigen, ZINC ION Authors: Zhou, B, Arnett, D.R, Yu, X, Brewster, A, Sowd, G.A, Xie, C.L, Vila, S, Gai, D, Fanning, E, Chen, X.S. Deposit date: 2012-03-08 Release date: 2012-06-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (5 Å) Cite: Structural basis for the interaction of a hexameric replicative helicase with the regulatory subunit of human DNA polymerase alpha-primase. J.Biol.Chem., 287, 2012
6IJV	Solution NMR structure of a 14-mer dsDNA complexed with a novel NIR fluorescent probe QCy-DT Descriptor: 2,2'-{(4-hydroxy-1,3-phenylene)di[(E)ethene-2,1-diyl]}bis(3-methyl-1,3-benzothiazol-3-ium), DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3') Authors: Basu, G, Ganguly, S. Deposit date: 2018-10-12 Release date: 2019-03-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: DNA Minor Groove-Induced cis - trans Isomerization of a Near-Infrared Fluorescent Probe. Biochemistry, 2021
6IJW	SOLUTION NMR STRUCTURE OF A DODECAMERIC dsDNA COMPLEXED WITH A NIR FLUORESCENT PROBE QCy-DT Descriptor: 2,2'-{(4-hydroxy-1,3-phenylene)di[(E)ethene-2,1-diyl]}bis(3-methyl-1,3-benzothiazol-3-ium), DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') Authors: Ganguly, S, Basu, G. Deposit date: 2018-10-12 Release date: 2019-03-13 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: DNA Minor Groove-Induced cis - trans Isomerization of a Near-Infrared Fluorescent Probe. Biochemistry, 2021
1D6M	CRYSTAL STRUCTURE OF E. COLI DNA TOPOISOMERASE III Descriptor: DNA TOPOISOMERASE III Authors: Mondragon, A, DiGate, R. Deposit date: 1999-10-14 Release date: 2000-10-14 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3 Å) Cite: The structure of Escherichia coli DNA topoisomerase III. Structure Fold.Des., 7, 1999
440D	HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) Descriptor: DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') Authors: Gao, Y.-G, Robinson, H.H, Wang, A.H.-J. Deposit date: 1999-01-13 Release date: 1999-01-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.1 Å) Cite: High-resolution A-DNA crystal structures of d(AGGGGCCCCT). An A-DNA model of poly(dG) x poly(dC). Eur.J.Biochem., 261, 1999
7XKM	Crystal structure of DNA-Ag(I) rod comprising a one-dimensional array of 11 silver ions Descriptor: DNA (5'-D(*CP*GP*CP*GP*CP*(BRU)P*CP*(BRU)P*CP*GP*CP*G)-3'), SILVER ION Authors: Kondo, J, Ono, A, Atsugi, T. Deposit date: 2022-04-20 Release date: 2022-07-06 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.79 Å) Cite: A Novel Ag I -DNA Rod Comprising a One-Dimensional Array of 11 Silver Ions within a Double Helical Structure. Angew.Chem.Int.Ed.Engl., 61, 2022
441D	HIGH RESOLUTION A-DNA CRYSTAL STRYCTURES OF D(AGGGGCCCCT): AN A-DNA MODEL OF POLY(DG).POLY(DC) Descriptor: DNA (5'-D(*AP*GP*GP*GP*GP*CP*CP*CP*CP*T)-3') Authors: Gao, Y.G, Robinson, H.H, Wang, A.H. Deposit date: 1999-01-13 Release date: 1999-01-15 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.5 Å) Cite: High-resolution A-DNA crystal structures of d(AGGGGCCCCT). An A-DNA model of poly(dG) x poly(dC). Eur.J.Biochem., 261, 1999
3PVV	Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNA Descriptor: Chromosomal replication initiator protein dnaA, DNA (5'-D(*CP*GP*TP*TP*GP*TP*CP*CP*AP*CP*AP*AP*C)-3'), DNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*CP*AP*AP*CP*G)-3') Authors: Tsodikov, O.V, Biswas, T. Deposit date: 2010-12-07 Release date: 2011-05-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural and Thermodynamic Signatures of DNA Recognition by Mycobacterium tuberculosis DnaA. J.Mol.Biol., 410, 2011
3PVP	Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNA Descriptor: Chromosomal replication initiator protein dnaA, DNA (5'-D(*CP*GP*TP*TP*AP*TP*CP*CP*AP*CP*AP*AP*C)-3'), DNA (5'-D(*GP*TP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*G)-3') Authors: Tsodikov, O.V, Biswas, T. Deposit date: 2010-12-07 Release date: 2011-05-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural and Thermodynamic Signatures of DNA Recognition by Mycobacterium tuberculosis DnaA. J.Mol.Biol., 410, 2011
7WAZ	PlmCasX-sgRNAv1-dsDNA ternary complex at ts loading state Descriptor: NTS-DNA, RNA (115-MER), TS-DNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
3NDH	Restriction endonuclease in complex with substrate DNA Descriptor: ACETATE ION, CHLORIDE ION, DNA (5'-D(*C*CP*AP*TP*CP*GP*CP*GP*TP*AP*C)-3'), ... Authors: Firczuk, M, Wojciechowski, M, Czapinska, H, Bochtler, M. Deposit date: 2010-06-07 Release date: 2010-07-28 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.3 Å) Cite: DNA intercalation without flipping in the specific ThaI-DNA complex Nucleic Acids Res., 39, 2011
2ZJT	Crystal structure of dna gyrase B' domain sheds lights on the mechanism for T-segment navigation Descriptor: DNA gyrase subunit B Authors: Fu, G.S, Zhu, D.Y, Hu, Y.L, Wang, D.C. Deposit date: 2008-03-10 Release date: 2009-03-10 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of DNA gyrase B' domain sheds lights on the mechanism for T-segment navigation Nucleic Acids Res., 37, 2009
1BPZ	HUMAN DNA POLYMERASE BETA COMPLEXED WITH NICKED DNA Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3'), DNA (5'-D(*GP*TP*CP*GP*G)-3'), ... Authors: Sawaya, M.R, Prasad, R, Wilson, S.H, Kraut, J, Pelletier, H. Deposit date: 1997-04-14 Release date: 1997-06-16 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism. Biochemistry, 36, 1997
7YGO	DNA duplex containing 5OHU-Hg(II)-T base pairs Descriptor: DNA (5'-D(*GP*GP*AP*CP*CP*TP*(6HU)P*GP*GP*TP*CP*C)-3'), MERCURY (II) ION Authors: Kondo, J, Torigoe, H, Arakawa, F. Deposit date: 2022-07-12 Release date: 2023-05-24 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.403 Å) Cite: Specific binding of Hg 2+ to mismatched base pairs involving 5-hydroxyuracil in duplex DNA. J.Inorg.Biochem., 241, 2023

<23242526272829303132333435363738>