PDB: 7981 resultsInfo pagesStatus searchChemie searchBIRD

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4PRA	Crystal structure of a HLA-B*35:01-HPVG-Q5 Descriptor: Beta-2-microglobulin, Epstein-Barr nuclear antigen 1, MHC class I antigen Authors: Yu Chih, L, Rossjohn, J, Gras, S. Deposit date: 2014-03-05 Release date: 2014-04-16 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.85 Å) Cite: A Molecular Basis for the Interplay between T Cells, Viral Mutants, and Human Leukocyte Antigen Micropolymorphism. J.Biol.Chem., 289, 2014
2R9M	Cathepsin S complexed with Compound 15 Descriptor: Cathepsin S, N-[(1S)-2-[(4-cyano-1-methylpiperidin-4-yl)amino]-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide Authors: Ward, Y.D, Emmanuel, M.J, Thomson, D.S, Liu, W, Bekkali, Y, Frye, L.L, Girardot, M, Morwick, T, Young, E.R.R, Zindell, R, Hrapchak, M, DeTuri, M, White, A, Crane, K.M, White, D.M, Wang, Y, Hao, M.-H, Grygon, C.A, Labadia, M.E, Wildeson, J, Freeman, D, Nelson, R, Capolino, A, Peterson, J.D, Raymond, E.L, Brown, M.L, Spero, D.M. Deposit date: 2007-09-13 Release date: 2007-12-18 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Design and Synthesis of Reversible Inhibitors of Cathepsin S: alpha,alpha-Disubstitution at the P1 Residue Provides Potent Inhibitors in Cellular Assays and In Vivo Models of Antigen Presentation To be Published
4PRH	Crystal structure of TK3 TCR-HLA-B*35:08-HPVG-D5 complex Descriptor: Beta-2-microglobulin, Epstein-Barr nuclear antigen 1, MHC class I antigen, ... Authors: Yu Chih, L, Rossjohn, J, Gras, S. Deposit date: 2014-03-05 Release date: 2014-04-30 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A Molecular Basis for the Interplay between T Cells, Viral Mutants, and Human Leukocyte Antigen Micropolymorphism. J.Biol.Chem., 289, 2014
2R9O	Cathepsin S complexed with Compound 8 Descriptor: Cathepsin S, N-[(1S)-2-{[(1R)-2-(benzyloxy)-1-cyano-1-methylethyl]amino}-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide Authors: Ward, Y.D, Emmanuel, M.J, Thomson, D.S, Liu, W, Bekkali, Y, Frye, L.L, Girardot, M, Morwick, T, Young, E.R.R, Zindell, R, Hrapchak, M, DeTuri, M, White, A, Crane, K.M, White, D.M, Wang, Y, Hao, M.-H, Grygon, C.A, Labadia, M.E, Wildeson, J, Freeman, D, Nelson, R, Capolino, A, Peterson, J.D, Raymond, E.L, Brown, M.L, Spero, D.M. Deposit date: 2007-09-13 Release date: 2007-12-18 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Design and Synthesis of Reversible Inhibitors of Cathepsin S: alpha,alpha-Disubstitution at the P1 Residue Provides Potent Inhibitors in Cellular Assays and In Vivo Models of Antigen Presentation to be published
2R9N	Cathepsin S complexed with Compound 26 Descriptor: Cathepsin S, N-[(1S)-2-{[(3S)-1-benzyl-3-cyanopyrrolidin-3-yl]amino}-1-(cyclohexylmethyl)-2-oxoethyl]morpholine-4-carboxamide Authors: Ward, Y.D, Emmanuel, M.J, Thomson, D.S, Liu, W, Bekkali, Y, Frye, L.L, Girardot, M, Morwick, T, Young, E.R.R, Zindell, R, Hrapchak, M, DeTuri, M, White, A, Crane, K.M, White, D.M, Wang, Y, Hao, M.-H, Grygon, C.A, Labadia, M.E, Wildeson, J, Freeman, D, Nelson, R, Capolino, A, Peterson, J.D, Raymond, E.L, Brown, M.L, Spero, D.M. Deposit date: 2007-09-13 Release date: 2007-12-18 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Design and Synthesis of Reversible Inhibitors of Cathepsin S: alpha,alpha-Disubstitution at the P1 Residue Provides Potent Inhibitors in Cellular Assays and In Vivo Models of Antigen Presentation to be published
8QWU	Structure of the amyloid-forming peptide LYIQNL, grown without ethanol Descriptor: Peptide LYIQNL Authors: Durvanger, Z. Deposit date: 2023-10-20 Release date: 2024-08-07 Last modified: 2024-09-04 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Solvent induced amyloid polymorphism and the uncovering of the elusive class 3 amyloid topology. Commun Biol, 7, 2024
8QWV	Structure of the amyloid-forming peptide LYIQNL, grown in the presence of ethanol Descriptor: ETHANOL, Peptide LYIQNL Authors: Durvanger, Z. Deposit date: 2023-10-20 Release date: 2024-08-07 Last modified: 2024-09-04 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Solvent induced amyloid polymorphism and the uncovering of the elusive class 3 amyloid topology. Commun Biol, 7, 2024
8QWW	Structure of the amyloid-forming peptide LYIQWL from Tc5b, grown from 10% ethanol without TFA Descriptor: Peptide LYIQWL from Tc5b Authors: Durvanger, Z. Deposit date: 2023-10-20 Release date: 2024-08-07 Last modified: 2024-09-04 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Solvent induced amyloid polymorphism and the uncovering of the elusive class 3 amyloid topology. Commun Biol, 7, 2024
6OSM	Cryo-EM structure of the N-terminally acetylated C-terminal Alpha-synuclein truncation Ac1-103 Descriptor: Alpha-synuclein Authors: Xiaodan, N, Ryan, P.M, Jiansen, J, Jennifer, C.L. Deposit date: 2019-05-01 Release date: 2019-09-25 Last modified: 2025-06-04 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural Insights into alpha-Synuclein Fibril Polymorphism: Effects of Parkinson's Disease-Related C-Terminal Truncations. J.Mol.Biol., 431, 2019
4PRN	Crystal structure of a HLA-B*35:01-HPVG-A4 Descriptor: ACETATE ION, Beta-2-microglobulin, Epstein-Barr nuclear antigen 1, ... Authors: Yu Chih, L, Rossjohn, J, Gras, S. Deposit date: 2014-03-06 Release date: 2014-04-16 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.65 Å) Cite: A Molecular Basis for the Interplay between T Cells, Viral Mutants, and Human Leukocyte Antigen Micropolymorphism. J.Biol.Chem., 289, 2014
4PRB	Crystal structure of a HLA-B*35:08-HPVG-A4 Descriptor: ACETATE ION, Beta-2-microglobulin, Epstein-Barr nuclear antigen 1, ... Authors: Yu Chih, L, Rossjohn, J, Gras, S. Deposit date: 2014-03-05 Release date: 2014-04-16 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (1.75 Å) Cite: A Molecular Basis for the Interplay between T Cells, Viral Mutants, and Human Leukocyte Antigen Micropolymorphism. J.Biol.Chem., 289, 2014
7JMY	Solution NMR structure of human Brd3 ET domain Descriptor: Bromodomain-containing protein 3 Authors: Aiyer, S, Swapna, G.V.T, Roth, J.M, Montelione, G.T. Deposit date: 2020-08-03 Release date: 2021-03-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A common binding motif in the ET domain of BRD3 forms polymorphic structural interfaces with host and viral proteins. Structure, 29, 2021
8OPC	Virus-like Particle based on PVY coat protein with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPG	Virus-like Particle based on PVY coat protein with dC79 deletion with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPD	Virus-like Particle based on PVY coat protein with dC40 deletion with stacked-ring architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPL	Virus-like Particle based on PVY coat protein with T43C and D136C mutation with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPJ	Global refinement of cubic assembly from truncated PVY coat protein with K176C mutation Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6OSJ	Cryo-EM structure of the N-terminally acetylated full length alpha-synuclein fibrils (Ac1-140) Descriptor: Alpha-synuclein Authors: Xiaodan, N, Ryan, P.M, Jiansen, J, Jennifer, C.L. Deposit date: 2019-05-01 Release date: 2019-09-25 Last modified: 2025-06-04 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural Insights into alpha-Synuclein Fibril Polymorphism: Effects of Parkinson's Disease-Related C-Terminal Truncations. J.Mol.Biol., 431, 2019
8OPB	Virus-like Particle based on PVY coat protein with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-02-14 Method: ELECTRON MICROSCOPY (3.58 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPA	Virus-like Particle based on PVY coat protein with stacked-ring architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.34 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPF	Virus-like Particle based on PVY coat protein with dC60 deletion with RNA-free helical architecture Descriptor: Genome polyprotein (Fragment) Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPK	Local refinement of cubic assembly from truncated PVY coat protein with K176C mutation Descriptor: Genome polyprotein Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.16 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
8OPE	Virus-like Particle based on PVY coat protein with dC40 deletion with helical architecture encapsidating ssRNA Descriptor: Genome polyprotein (Fragment), RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Kavcic, L, Kezar, A, Podobnik, M. Deposit date: 2023-04-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: From structural polymorphism to structural metamorphosis of the coat protein of flexuous filamentous potato virus Y. Commun Chem, 7, 2024
6OSL	Cryo-EM structure of the N-terminally acetylated C-terminal Alpha-synuclein truncation Ac1-122 Descriptor: Alpha-synuclein Authors: Ni, X, McGlinchey, R.P, Jiang, J, Lee, J.C. Deposit date: 2019-05-01 Release date: 2019-09-25 Last modified: 2025-06-04 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural Insights into alpha-Synuclein Fibril Polymorphism: Effects of Parkinson's Disease-Related C-Terminal Truncations. J.Mol.Biol., 431, 2019
8OJ2	Crystal structure of the DNA binding domain of M. polymorpha Auxin Response Factor 2 (MpARF2) in complex with protomor-like sequence IR7 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Auxin response factor, CHLORIDE ION, ... Authors: Crespo, I, Weijers, D, Boer, D.R. Deposit date: 2023-03-23 Release date: 2024-04-17 Last modified: 2025-04-23 Method: X-RAY DIFFRACTION (2.56 Å) Cite: The structure and function of the DNA binding domain of class B MpARF2 share more traits with class A AtARF5 than to that of class B AtARF1. Structure, 2025

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