PDB: 45677 resultsInfo pagesStatus searchChemie searchBIRD

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2ZK7	Structure of a C-terminal deletion mutant of Thermoplasma acidophilum aldohexose dehydrogenase (AldT) Descriptor: Glucose 1-dehydrogenase related protein Authors: Nishioka, T, Yasutake, Y, Nishiya, Y, Tamura, N, Tamura, T. Deposit date: 2008-03-12 Release date: 2009-01-13 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.71 Å) Cite: C-terminal tail derived from the neighboring subunit is critical for the activity of Thermoplasma acidophilum D-aldohexose dehydrogenase Proteins, 74, 2009
2Z5U	Crystal structure of Lysine-specific histone demethylase 1 Descriptor: FAD-trans-2-Phenylcyclopropylamine Adduct, Lysine-specific histone demethylase 1 Authors: Mimasu, S, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-07-17 Release date: 2008-04-01 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal structure of histone demethylase LSD1 and tranylcypromine at 2.25 A Biochem.Biophys.Res.Commun., 366, 2008
2ZTV	The binary complex of D-3-hydroxybutyrate dehydrogenase with NAD+ Descriptor: D(-)-3-hydroxybutyrate dehydrogenase, GLYCEROL, MAGNESIUM ION, ... Authors: Nakashima, K, Nakajima, Y, Ito, K, Yoshimoto, T. Deposit date: 2008-10-09 Release date: 2009-08-25 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Closed complex of the D-3-hydroxybutyrate dehydrogenase induced by an enantiomeric competitive inhibitor. J.Biochem., 145, 2009
2ZUV	Crystal structure of Galacto-N-biose/Lacto-N-biose I phosphorylase in complex with GlcNAc, Ethylene glycol, and nitrate Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-alpha-D-glucopyranose, Lacto-N-biose phosphorylase, ... Authors: Hidaka, M, Nishimoto, M, Kitaoka, M, Wakagi, T, Shoun, H, Fushinobu, S. Deposit date: 2008-10-28 Release date: 2008-12-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.85 Å) Cite: The crystal structure of galacto-N-biose/lacto-N-biose I phosphorylase: A large deformation of a tim barrel scaffold J.Biol.Chem., 284, 2009
2Z1M	Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5 Descriptor: GDP-D-mannose dehydratase, GUANOSINE-5'-DIPHOSPHATE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Authors: Niwa, H, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-05-09 Release date: 2007-11-13 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5 To be Published
2ZUU	Crystal structure of Galacto-N-biose/Lacto-N-biose I phosphorylase in complex with GlcNAc Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, GLYCEROL, Lacto-N-biose phosphorylase, ... Authors: Hidaka, M, Nishimoto, M, Kitaoka, M, Wakagi, T, Shoun, H, Fushinobu, S. Deposit date: 2008-10-28 Release date: 2008-12-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The crystal structure of galacto-N-biose/lacto-N-biose I phosphorylase: A large deformation of a tim barrel scaffold J.Biol.Chem., 284, 2009
2Z45	Crystal Structure of Zn-bound ORF134 Descriptor: ORF134, ZINC ION Authors: Tomimoto, Y, Ihara, K, Onizuka, T, Kanai, S, Ashida, H, Yokota, A, Tanaka, S, Miyasaka, H, Yamada, Y, Kato, R, Wakatsuki, S. Deposit date: 2007-06-12 Release date: 2008-06-24 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal Structure of ORF134 To be Published
2ZIR	Crystal Structure of rat protein farnesyltransferase complexed with a benzofuran inhibitor and FPP Descriptor: 2-[(S)-(4-chlorophenyl)(hydroxy)(1-methyl-1H-imidazol-5-yl)methyl]-N-morpholin-4-yl-7-phenyl-1-benzofuran-5-carboxamide, FARNESYL DIPHOSPHATE, GLYCEROL, ... Authors: Fukami, T.A, Sogabe, S, Nagata, Y, Kondoh, O, Ishii, N. Deposit date: 2008-02-22 Release date: 2009-02-24 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Synthesis and structure-activity relationships of novel benzofuran farnesyltransferase inhibitors Bioorg.Med.Chem.Lett., 19, 2009
2ZJS	Crystal Structure of SecYE translocon from Thermus thermophilus with a Fab fragment Descriptor: Fab56 (heavy chain), Fab56 (light chain), Preprotein translocase SecE subunit, ... Authors: Tsukazaki, T, Mori, H, Fukai, S, Ishitani, R, Perederina, A, Vassylyev, D.G, Ito, K, Nureki, O. Deposit date: 2008-03-08 Release date: 2008-10-14 Last modified: 2021-11-10 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Conformational transition of Sec machinery inferred from bacterial SecYE structures Nature, 455, 2008
2Z3F	Crystal structure of spCia1/Asf1 complexed with Cac2 peptide Descriptor: Histone chaperone cia1, SPAC26H5.03 protein Authors: Malay, A.D, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-06-04 Release date: 2008-03-11 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structures of Fission Yeast Histone Chaperone Asf1 Complexed with the Hip1 B-domain or the Cac2 C Terminus J.Biol.Chem., 283, 2008
2YVU	Crystal structure of APE1195 Descriptor: Probable adenylyl-sulfate kinase Authors: Ishii, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-04-15 Release date: 2007-10-16 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of APE1195 To be published
2YYR	Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide Descriptor: H3K4Me3 peptide, Pygopus homolog 1, ZINC ION Authors: Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-05-01 Release date: 2008-05-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide To be Published
2YXZ	Crystal structure of tt0281 from Thermus thermophilus HB8 Descriptor: Thiamin-monophosphate kinase Authors: Goto, M. Deposit date: 2007-04-27 Release date: 2008-04-29 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of tt0281 from Thermus thermophilus HB8 to be published
2YYU	Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus Descriptor: CYTIDINE-5'-MONOPHOSPHATE, Orotidine 5'-phosphate decarboxylase Authors: Kanagawa, M, Baba, S, Nakamura, Y, Bessho, Y, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2007-05-02 Release date: 2007-11-06 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of uncharacterized conserved protein from Geobacillus kaustophilus To be Published
2YCD	Structure of a novel Glutathione Transferase from Agrobacterium tumefaciens. Descriptor: GLUTATHIONE S-TRANSFERASE, PHOSPHATE ION, S-(P-NITROBENZYL)GLUTATHIONE Authors: Skopelitou, K, Dhavala, P, Papageorgiou, A.C, Labrou, N.E. Deposit date: 2011-03-13 Release date: 2012-03-28 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.4 Å) Cite: A Glutathione Transferase from Agrobacterium Tumefaciens Reveals a Novel Class of Bacterial Gst Superfamily. Plos One, 7, 2012
2YG0	CBM62 FROM CLOSTRIDIUM THERMOCELLUM XYL5A Descriptor: CALCIUM ION, CARBOHYDRATE BINDING FAMILY 6, GLYCEROL, ... Authors: Montanier, C.Y, Correia, M.A.S, Flint, J.E, Zhu, Y, Basle, A, Mckee, L.S, Prates, J.A.M, Polizzi, S.J, Coutinho, P.M, Henrissat, B, Fontes, C.M.G.A, Gilbert, H.J. Deposit date: 2011-04-11 Release date: 2011-05-18 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: A Novel, Noncatalytic Carbohydrate-Binding Module Displays Specificity for Galactose-Containing Polysaccharides Through Calcium-Mediated Oligomerization. J.Biol.Chem., 286, 2011
3AO2	Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase Descriptor: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 3-(7-bromo-1,3-benzodioxol-5-yl)-1-methyl-1H-pyrazol-5-amine, ... Authors: Wielens, J, Chalmers, D.K, Headey, S.J, Parker, M.W, Scanlon, M.J. Deposit date: 2010-09-20 Release date: 2011-03-16 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1 Chemmedchem, 6, 2011
3ANA	THREE-DIMENSIONAL STRUCTURE OF D(GGGATCCC) IN THE CRYSTALLINE STATE Descriptor: DNA (5'-D(*GP*GP*GP*AP*TP*CP*CP*C)-3') Authors: Heinemann, U, Lauble, H. Deposit date: 1988-07-06 Release date: 1989-01-09 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Three-dimensional structure of d(GGGATCCC) in the crystalline state. Nucleic Acids Res., 16, 1988
3AO1	Fragment-based approach to the design of ligands targeting a novel site in HIV-1 integrase Descriptor: 1,3-benzodioxol-5-ol, CADMIUM ION, POL polyprotein, ... Authors: Wielens, J, Parker, M.W, Chalmers, D.K, Scanlon, M.J. Deposit date: 2010-09-17 Release date: 2011-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1 Chemmedchem, 6, 2011
385D	FORMATION OF A NEW COMPOUND IN THE CRYSTAL STRUCTURE OF CYANOMORPHOLINODOXORUBICIN COMPLEXED WITH D(CGATCG) Descriptor: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'), N-ETHYLHYDROXY-DOXORUBICIN Authors: Ettorre, A, Cirilli, M, Ughetto, G. Deposit date: 1998-03-05 Release date: 1998-10-30 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Degradation of the morpholino ring in the crystal structure of cyanomorpholinodoxorubicin complexed with d(CGATCG). Eur.J.Biochem., 258, 1998
397D	A 1.3 A RESOLUTION CRYSTAL STRUCTURE OF THE HIV-1 TRANS-ACTIVATION RESPONSE REGION RNA STEM REVEALS A METAL ION-DEPENDENT BULGE CONFORMATION Descriptor: CALCIUM ION, RNA (5'-R(*GP*CP*UP*CP*UP*CP*UP*GP*GP*CP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP*CP*G)-3') Authors: Ippolito, J.A, Steitz, T.A. Deposit date: 1998-04-30 Release date: 1998-09-11 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.3 Å) Cite: A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation. Proc.Natl.Acad.Sci.USA, 95, 1998
3AHP	Crystal structure of stable protein, CutA1, from a psychrotrophic bacterium Shewanella sp. SIB1 Descriptor: CutA1 Authors: Tanaka, S, Angkawidjaja, C, Koga, Y, Takano, K, Kanaya, S. Deposit date: 2010-04-26 Release date: 2011-01-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of stable protein CutA1 from psychrotrophic bacterium Shewanella sp. SIB1 J.SYNCHROTRON RADIAT., 18, 2011
3AO5	Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase Descriptor: 5-(7-bromo-1,3-benzodioxol-5-yl)-1-methyl-1H-pyrazol-3-amine, CADMIUM ION, CHLORIDE ION, ... Authors: Wielens, J, Headey, S.J, Parker, M.W, Chalmers, D.K, Scanlon, M.J. Deposit date: 2010-09-21 Release date: 2011-03-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Fragment-based design of ligands targeting a novel site on the integrase enzyme of human immunodeficiency virus 1 Chemmedchem, 6, 2011
3AEX	Catalytic intermediate analogue of threonine synthase from Thermus thermophilus HB8 Descriptor: (3E)-4-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-2-oxobut-3-enoic acid, PHOSPHATE ION, Threonine synthase Authors: Murakawa, T, Machida, Y, Hayashi, H. Deposit date: 2010-02-13 Release date: 2010-11-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Product-assisted catalysis as the basis of the reaction specificity of threonine synthase. J.Biol.Chem., 286, 2011
3AGY	Crystal structure of human Hsp40 Hdj1 peptide-binding domain complexed with a C-terminal peptide of Hsp70 Descriptor: DnaJ homolog subfamily B member 1, peptide of Heat shock cognate 71 kDa protein Authors: Suzuki, H, Noguchi, S, Satow, Y. Deposit date: 2010-04-12 Release date: 2011-02-23 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Peptide-binding sites as revealed by the crystal structures of the human Hsp40 Hdj1 C-terminal domain in complex with the octapeptide from human Hsp70 Biochemistry, 49, 2010

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