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9OJO
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Crystal structure of TNF alpha in complex with compound 1
Descriptor: 2-{5-[(1S,10S)-1-phenyl-1,2,3,4-tetrahydropyrido[1,2-a][1,3]benzimidazol-8-yl]pyrimidin-2-yl}propan-2-ol, Tumor necrosis factor
Authors:Judge, R.A, Bian, Z, Longenecker, K.L.
Deposit date:2025-05-08
Release date:2025-07-23
Last modified:2025-08-27
Method:X-RAY DIFFRACTION (1.358 Å)
Cite:Discovery of Orally Efficacious Bridged Piperazines as smTNF Modulators.
J.Med.Chem., 68, 2025
9OJP
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BU of 9ojp by Molmil
Crystal structure of E. coli ApaH bound to Manganese ions
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bis(5'-nucleosyl)-tetraphosphatase [symmetrical], MANGANESE (II) ION, ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2025-05-08
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:ApaH decaps Np 4 N-capped RNAs in two alternative orientations.
Nat.Chem.Biol., 2025
9RQ4
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BU of 9rq4 by Molmil
Fragment screening of FosAKP, cryo structure in complex with fragment F2X-entry D06
Descriptor: (3-methoxyphenyl)(pyrrolidin-1-yl)methanone, 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, ...
Authors:Guenther, S, Galchenkova, M, Fischer, P, Reinke, P.Y.A, Falke, S, Thekku Veedu, S, Rodrigues, A.C, Senst, J, Meents, A.
Deposit date:2025-06-25
Release date:2025-10-15
Last modified:2025-10-22
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Room-temperature X-ray fragment screening with serial crystallography.
Nat Commun, 16, 2025
9S3A
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BU of 9s3a by Molmil
TaGST-10 in complex with deoxynivalenol-13-glutathione
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, Deoxynivalenol-13-cysteine, ...
Authors:Michlmayr, H, Papageorgiou, A.C.
Deposit date:2025-07-24
Release date:2025-08-27
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Detoxification of deoxynivalenol by pathogen-inducible tau-class glutathione transferases from wheat.
J.Biol.Chem., 301, 2025
9OQ9
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BU of 9oq9 by Molmil
Crystal structure of E. coli ApaH in complex with Ap4AGG
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BIS(ADENOSINE)-5'-TETRAPHOSPHATE, Bis(5'-nucleosyl)-tetraphosphatase [symmetrical], ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2025-05-20
Release date:2025-09-03
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:ApaH decaps Np 4 N-capped RNAs in two alternative orientations.
Nat.Chem.Biol., 2025
9QQ0
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BU of 9qq0 by Molmil
KRAS-G12D(1-169) - GDP IN covalent COMPLEX WITH compound (3R,4R)-3
Descriptor: (2~{R})-2-ethyl-4-[(1~{R},5~{S})-3-[7-(8-ethynyl-7-fluoranyl-3-oxidanyl-naphthalen-1-yl)-8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]pyrido[4,3-d]pyrimidin-4-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]-2-methyl-4-oxidanylidene-butanoic acid, GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, ...
Authors:Ostermann, N.
Deposit date:2025-03-31
Release date:2025-07-23
Last modified:2025-08-06
Method:X-RAY DIFFRACTION (1.546 Å)
Cite:Promise and Challenge of beta-Lactone Electrophiles to Target Aspartate 12 of Mutant KRAS G12D .
J.Med.Chem., 68, 2025
9P6B
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BU of 9p6b by Molmil
Cryo-EM structure of full-length human TRPV1 in the presence of alpha-humulene
Descriptor: (2R)-3-{[(R)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctadecanoate, (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, SODIUM ION, ...
Authors:Talyzina, I.A, Sobolevsky, A.I.
Deposit date:2025-06-18
Release date:2025-07-23
Last modified:2025-07-30
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Structural basis of the inhibition of TRPV1 by analgesic sesquiterpenes.
Proc.Natl.Acad.Sci.USA, 122, 2025
9P1H
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BU of 9p1h by Molmil
100K human S-adenosylmethionine decarboxylase
Descriptor: 1,4-DIAMINOBUTANE, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ...
Authors:Patel, J.R, Bonzon, T.J, Bahkt, T, Fagbohun, O.O, Clinger, J.A.
Deposit date:2025-06-10
Release date:2025-09-17
Last modified:2025-10-08
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Multi-Temperature Crystallography of S-Adenosylmethionine Decarboxylase Observes Dynamic Loop Motions.
Biomolecules, 15, 2025
9Q1M
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BU of 9q1m by Molmil
Crystal structure of human TEAD2 Yap binding domain covalently bound to an allosteric regulator
Descriptor: 1-{4-[3-(trifluoromethyl)anilino]-2H-isoindol-2-yl}propan-1-one, Transcriptional enhancer factor TEF-4
Authors:Bum-Erdene, K, Gonzalez-Gutierrez, G, Meroueh, S.O.
Deposit date:2025-08-14
Release date:2025-09-03
Last modified:2025-10-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Small-Molecule Covalent Stabilization and Inhibition of the TEAD·YAP1 Transcription Factor in Cancer Cells.
Acs Chem.Biol., 20, 2025
9VEI
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BU of 9vei by Molmil
structure of human KCNQ1-KCNE1-CaM complex with PIP2
Descriptor: CALCIUM ION, Calmodulin-1, Potassium voltage-gated channel subfamily E member 1, ...
Authors:Cui, C, Kermani, A, Cui, J, Sun, J.
Deposit date:2025-06-09
Release date:2025-08-20
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Mechanisms of KCNQ1 gating modulation by KCNE1/3 for cell-specific function.
Cell Res., 2025
9R2E
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BU of 9r2e by Molmil
Structure of ARGX-121 Fab fragment in complex with the Fc fragment of IgA1
Descriptor: 1,2-ETHANEDIOL, ARGX-121 Fab fragment heavy chain, ARGX-121 Fab fragment light chain, ...
Authors:Pannecoucke, E, Voet, S, Deweirdt, L, Verbeiren, J, Gabriels, S, Provost, M, Freier, R, Koenig, J, Lammens, A, Silence, K.
Deposit date:2025-04-30
Release date:2025-05-14
Method:X-RAY DIFFRACTION (2.54 Å)
Cite:Structure of ARGX-121 Fab fragment in complex with the Fc fragment of IgA1
To Be Published
9SKO
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BU of 9sko by Molmil
Crystal structure of HLA-A0201 in complex with peptide LLWNGPMAVS
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, CHLORIDE ION, ...
Authors:Liu, Y, Gfeller, D, Guillaume, P, Larabi, A, Lau, K, Pojer, F.
Deposit date:2025-09-02
Release date:2025-09-17
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structure of HLA-A0201 in complex with peptide LLWNGPMAVS
To Be Published
9SKP
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BU of 9skp by Molmil
Crystal structure of HLA-A0201 in complex with peptide SLLWNGPMAV
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, CHLORIDE ION, ...
Authors:Liu, Y, Gfeller, D, Guillaume, P, Larabi, A, Lau, K, Pojer, F.
Deposit date:2025-09-02
Release date:2025-09-17
Last modified:2025-09-24
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structure of HLA-A0201 in complex with peptide SLLWNGPMAV
To Be Published
9Y76
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BU of 9y76 by Molmil
Crystal structure of the human DCAF1 WDR domain in complex with OICR-40120
Descriptor: (4P,5M)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-{1-[2-(morpholin-4-yl)ethyl]-1H-pyrazol-4-yl}-1H-pyrrole-3-carboxamide, DDB1- and CUL4-associated factor 1, UNKNOWN LIGAND
Authors:kimani, S, Dong, A, Li, Y, Seitova, A, Mamai, A, Al-awar, R, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2025-09-09
Release date:2025-10-15
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Crystal structure of the human DCAF1 WDR domain in complex with OICR-40120
To be published
9RBG
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BU of 9rbg by Molmil
X-ray structure of decavanadate/lysozyme adduct obtained when the protein is treated with Cs2[V(V)2O4(mal)2]2H2O (structure A)
Descriptor: 2-[(4~{S})-1,1,6,6-tetrakis(oxidanyl)-3-oxidanylidene-2,5$l^{3},7-trioxa-1$l^{5},6$l^{4}-divanadabicyclo[3.2.0]heptan-4-yl]ethanoic acid, CHLORIDE ION, DECAVANADATE, ...
Authors:Paolillo, M, Ferraro, G, Merlino, A.
Deposit date:2025-05-26
Release date:2025-08-13
Last modified:2025-10-29
Method:X-RAY DIFFRACTION (1.46 Å)
Cite:Speciation and structural transformation of a V V -malate complex in the absence and in the presence of a protein: from a dinuclear species to decavanadate.
Inorg Chem Front, 12, 2025
9QFB
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BU of 9qfb by Molmil
Cryo-EM structure of the fully Coronin-1B-decorated actin filament in the ADP state.
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
Authors:Oosterheert, W, Boiero Sanders, M, Hofnagel, O, Bieling, P, Raunser, S.
Deposit date:2025-03-11
Release date:2025-10-08
Last modified:2025-10-22
Method:ELECTRON MICROSCOPY (2.74 Å)
Cite:Choreography of rapid actin filament disassembly by coronin, cofilin, and AIP1.
Cell, 2025
9RCW
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BU of 9rcw by Molmil
Primed-state RyR1 in 0.01% POPC micelles, in complex with a nanobody and FKBP12
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, ...
Authors:Li, C, Efremov, R.G.
Deposit date:2025-05-30
Release date:2025-09-17
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Primed-state RyR1 in 0.01% POPC micelles, in complex with a nanobody and FKBP
To Be Published
9QCZ
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BU of 9qcz by Molmil
Crystal structure of Rhizobium etli L-asparaginase ReAV K263A mutant
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
Authors:Pokrywka, K, Grzechowiak, M, Loch, J.I, Ruszkowski, M, Gilski, M, Jaskolski, M.
Deposit date:2025-03-05
Release date:2025-07-16
Last modified:2025-08-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Probing the Active Site of Class 3 L-Asparaginase by Mutagenesis: Mutations of the Ser-Lys Tandems of ReAV.
Biomolecules, 15, 2025
9VAK
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BU of 9vak by Molmil
Carbohydrate-binding module 32 of LnbB from Bifidobacterium bifidum, LNB complex
Descriptor: CALCIUM ION, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Zhang, X, Kashima, T, Fushinobu, S.
Deposit date:2025-06-03
Release date:2025-08-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural insights into lacto-N-biose I recognition by a family 32 carbohydrate-binding module from Bifidobacterium bifidum
To Be Published
9OJQ
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BU of 9ojq by Molmil
Crystal structure of E. coli ApaH in complex with ADP, active state
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ADENOSINE-5'-DIPHOSPHATE, Bis(5'-nucleosyl)-tetraphosphatase [symmetrical], ...
Authors:Nuthanakanti, A, Serganov, A.
Deposit date:2025-05-08
Release date:2025-09-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:ApaH decaps Np 4 N-capped RNAs in two alternative orientations.
Nat.Chem.Biol., 2025
9VEO
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BU of 9veo by Molmil
structure of human KCNQ1-CaM-PIP2 complex with straight conformation
Descriptor: CALCIUM ION, Calmodulin-1, Potassium voltage-gated channel subfamily KQT member 1, ...
Authors:Cui, C, Kermani, A, Cui, J, Sun, J.
Deposit date:2025-06-09
Release date:2025-08-20
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Mechanisms of KCNQ1 gating modulation by KCNE1/3 for cell-specific function.
Cell Res., 2025
9S71
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BU of 9s71 by Molmil
Crystal structure of RXR alpha LBD bound to a partial agonist 35 and a coactivator fragment SRC1
Descriptor: 3-[[4-(4,4-dimethyl-2,3-dihydroquinolin-1-yl)-6-(trifluoromethyl)pyrimidin-2-yl]amino]propanoic acid, Nuclear receptor coactivator 1, Retinoic acid receptor RXR-alpha
Authors:Morozov, V, Merk, D, Lewandowski, M.
Deposit date:2025-08-01
Release date:2025-10-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of RXR alpha LBD bound to a partial agonist 35 and a coactivator fragment SRC1
To Be Published
9S70
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BU of 9s70 by Molmil
Crystal structure of RXR alpha LBD bound to a partial agonist 21 and a coactivator fragment SRC1
Descriptor: 3-[[4-cyclobutyl-6-(3,4-dihydro-2~{H}-quinolin-1-yl)pyrimidin-2-yl]amino]propanoic acid, Nuclear receptor coactivator 1, Retinoic acid receptor RXR-alpha
Authors:Morozov, V, Merk, D, Lewandowski, M.
Deposit date:2025-08-01
Release date:2025-10-29
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of RXR alpha LBD bound to a partial agonist 21 and a coactivator fragment SRC1
To Be Published
9QFD
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BU of 9qfd by Molmil
Cryo-EM structure of the fully cofilin-1-decorated actin filament (cofilactin)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
Authors:Oosterheert, W, Boiero Sanders, M, Hofnagel, O, Bieling, P, Raunser, S.
Deposit date:2025-03-11
Release date:2025-10-08
Last modified:2025-10-22
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Choreography of rapid actin filament disassembly by coronin, cofilin, and AIP1.
Cell, 2025
9VEN
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BU of 9ven by Molmil
structure of human KCNQ1-CaM-PIP2 complex with bent conformation
Descriptor: CALCIUM ION, Calmodulin-1, Potassium voltage-gated channel subfamily KQT member 1, ...
Authors:Cui, C, Kermani, A, Cui, J, Sun, J.
Deposit date:2025-06-09
Release date:2025-08-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Mechanisms of KCNQ1 gating modulation by KCNE1/3 for cell-specific function.
Cell Res., 2025

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PDB entries from 2025-11-05

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