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7Y7H
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BU of 7y7h by Molmil
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T.
Deposit date:2022-06-22
Release date:2023-10-25
Last modified:2023-12-27
Method:ELECTRON MICROSCOPY (2.51 Å)
Cite:Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.
Cell, 186, 2023
8CO2
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BU of 8co2 by Molmil
YdaS N-terminal domain from prophage CP-933P in E. coli O157:H7
Descriptor: ISOPROPYL ALCOHOL, Putative antirepressor protein Cro, SULFATE ION
Authors:Prolic-Kalinsek, M, Loris, R.
Deposit date:2023-02-26
Release date:2023-03-08
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.63880718 Å)
Cite:YdaS from the Escherichia coli cryptic prophage CP-933P forms an evolutionary link between Cro repressors and HigA antitoxins
To Be Published
7EQF
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BU of 7eqf by Molmil
Crystal Structure of a Transcription Factor in complex with Ligand
Descriptor: (6~{R})-3-methyl-8-[(2~{S},4~{R},5~{S},6~{R})-6-methyl-5-[(2~{S},4~{R},5~{R},6~{R})-6-methyl-4-[(2~{S},5~{S},6~{S})-6-methyl-5-[(2~{S},4~{R},5~{S},6~{R})-6-methyl-5-[(2~{S},4~{S},5~{S},6~{R})-6-methyl-4-[(2~{S},5~{S},6~{S})-6-methyl-5-oxidanyl-oxan-2-yl]oxy-5-oxidanyl-oxan-2-yl]oxy-4-oxidanyl-oxan-2-yl]oxy-oxan-2-yl]oxy-5-oxidanyl-oxan-2-yl]oxy-4-oxidanyl-oxan-2-yl]oxy-1,6,11-tris(oxidanyl)-5,6-dihydrobenzo[a]anthracene-7,12-dione, TetR/AcrR family transcriptional regulator
Authors:Uehara, S, Tsugita, A, Matsui, T, Yokoyama, T, Ostash, I, Ostash, B, Tanaka, Y.
Deposit date:2021-05-01
Release date:2022-04-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:The carbohydrate tail of landomycin A is responsible for its interaction with the repressor protein LanK.
Febs J., 289, 2022
7OZ3
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BU of 7oz3 by Molmil
S. agalactiae BusR in complex with its busA-promotor DNA
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, GntR family transcriptional regulator, pBusA_for, ...
Authors:Bandera, A.M, Witte, G.
Deposit date:2021-06-25
Release date:2021-08-11
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.46 Å)
Cite:BusR senses bipartite DNA binding motifs by a unique molecular ruler architecture.
Nucleic Acids Res., 49, 2021
7EN6
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BU of 7en6 by Molmil
The crystal structure of Escherichia coli MurR in apo form
Descriptor: HTH-type transcriptional regulator MurR, PHOSPHATE ION
Authors:Zhang, Y, Chen, W, Ji, Q.
Deposit date:2021-04-16
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.276 Å)
Cite:Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli.
Nucleic Acids Res., 50, 2022
7EN5
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BU of 7en5 by Molmil
The crystal structure of Escherichia coli MurR in complex with N-acetylglucosamine-6-phosphate
Descriptor: 2-METHOXYETHANOL, 2-acetamido-2-deoxy-6-O-phosphono-beta-D-glucopyranose, GLYCEROL, ...
Authors:Zhang, Y, Chen, W, Ji, Q.
Deposit date:2021-04-16
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli.
Nucleic Acids Res., 50, 2022
7EN7
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BU of 7en7 by Molmil
The crystal structure of Escherichia coli MurR in complex with N-acetylmuramic-acid-6-phosphate
Descriptor: (2R)-2-[(2R,3R,4R,5S,6R)-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid, HTH-type transcriptional regulator MurR
Authors:Zhang, Y, Chen, W, Ji, Q.
Deposit date:2021-04-16
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli.
Nucleic Acids Res., 50, 2022
6X6F
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BU of 6x6f by Molmil
The structure of Pf6r from the filamentous phage Pf6 of Pseudomonas aeruginosa PA01
Descriptor: NITRATE ION, Pf6r
Authors:Michie, K.A, Norrian, P, Duggin, I.G, McDougald, D, Rice, S.A.
Deposit date:2020-05-28
Release date:2021-04-07
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.735 Å)
Cite:The Repressor C Protein, Pf4r, Controls Superinfection of Pseudomonas aeruginosa PAO1 by the Pf4 Filamentous Phage and Regulates Host Gene Expression.
Viruses, 13, 2021
6EJZ
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BU of 6ejz by Molmil
Tryptophan Repressor TrpR from E.coli variant S88Y with Indole-3-acetic acid as ligand
Descriptor: 1,2-ETHANEDIOL, 1H-INDOL-3-YLACETIC ACID, SULFATE ION, ...
Authors:Stiel, A.C, Shanmugaratnam, S, Herud-Sikimic, O, Juergens, G, Hocker, B.
Deposit date:2017-09-24
Release date:2019-02-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A biosensor for the direct visualization of auxin
Nature, 2021
8BNY
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BU of 8bny by Molmil
Structure of the tetramerization domain of pLS20 conjugation repressor Rco
Descriptor: CHLORIDE ION, Immunity repressor protein
Authors:Bernardo, N, Crespo, I, Meijer, W.J.J, Boer, D.R.
Deposit date:2022-11-14
Release date:2023-04-19
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.429 Å)
Cite:A tetramerization domain in prokaryotic and eukaryotic transcription regulators homologous to p53.
Acta Crystallogr D Struct Biol, 79, 2023
5X8U
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BU of 5x8u by Molmil
Crystal Structure of the wild Human ROR gamma Ligand Binding Domain.
Descriptor: Nuclear receptor ROR-gamma, Nuclear receptor coactivator 1
Authors:Noguchi, M, Nomura, A, Murase, K, Doi, S, Yamaguchi, K, Adachi, T.
Deposit date:2017-03-03
Release date:2017-06-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ternary complex of human ROR gamma ligand-binding domain, inverse agonist and SMRT peptide shows a unique mechanism of corepressor recruitment
Genes Cells, 22, 2017
5X8W
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BU of 5x8w by Molmil
Crystal Structure of the mutant Human ROR gamma Ligand Binding Domain.
Descriptor: Nuclear receptor ROR-gamma, Nuclear receptor coactivator 1
Authors:Noguchi, M, Nomura, A, Murase, K, Doi, S, Yamaguchi, K, Adachi, T.
Deposit date:2017-03-03
Release date:2017-06-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ternary complex of human ROR gamma ligand-binding domain, inverse agonist and SMRT peptide shows a unique mechanism of corepressor recruitment
Genes Cells, 22, 2017
7RGU
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BU of 7rgu by Molmil
The crystal structure of RocC bound to a transcriptional terminator
Descriptor: Modified SL3 of RocR, Repressor of competence, RNA Chaperone
Authors:Kim, H.J, Edwards, R.A, Glover, J.N.M.
Deposit date:2021-07-15
Release date:2022-11-09
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for recognition of transcriptional terminator structures by ProQ/FinO domain RNA chaperones.
Nat Commun, 13, 2022
6YJ2
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BU of 6yj2 by Molmil
Structural and DNA binding studies of the transcriptional repressor Rv2506 (BkaR) from Mycobacterium tuberculosis supports a role in L-Leucine catabolism
Descriptor: GLYCEROL, Probable transcriptional regulatory protein (Probably TetR-family)
Authors:Keep, N.H, Pritchard, J.E, Sula, A, Cole, A.R, Kendall, S.L.
Deposit date:2020-04-02
Release date:2021-04-14
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and DNA binding studies of the transcriptional repressor Rv2506 (BkaR) from Mycobacterium tuberculosis supports a role in L-Leucine catabolism
To be published
1SD7
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BU of 1sd7 by Molmil
Crystal Structure of a SeMet derivative of MecI at 2.65 A
Descriptor: Methicillin resistance regulatory protein mecI
Authors:Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L.
Deposit date:2004-02-13
Release date:2004-02-24
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons
J.Bacteriol., 187, 2005
5WHM
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BU of 5whm by Molmil
Crystal Structure of IclR Family Transcriptional Regulator from Brucella abortus
Descriptor: 1,2-ETHANEDIOL, ACETIC ACID, CALCIUM ION, ...
Authors:Kim, Y, Wu, R, Tesar, C, Endres, M, Babnigg, G, Crosson, S, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2017-07-17
Release date:2017-08-23
Last modified:2019-11-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Molecular control of gene expression byBrucellaBaaR, an IclR-type transcriptional repressor.
J. Biol. Chem., 293, 2018
5Y2W
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BU of 5y2w by Molmil
Structure of Synechocystis PCC6803 CcmR regulatory domain in complex with 2-PG
Descriptor: 2-PHOSPHOGLYCOLIC ACID, Rubisco operon transcriptional regulator
Authors:Jiang, Y.L, Wang, X.P, Sun, H, Cheng, W, Cao, D.D, Han, S.J, Li, W.F, Chen, Y, Zhou, C.Z.
Deposit date:2017-07-27
Release date:2017-12-27
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Coordinating carbon and nitrogen metabolic signaling through the cyanobacterial global repressor NdhR.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5JGC
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BU of 5jgc by Molmil
Crystal structure of the rice Topless related protein 2 (TPR2) N-terminal topless domain (1-209) L111A, L130A, L179A and I195A mutant
Descriptor: Protein TPR1, ZINC ION
Authors:Ke, J, Ma, H, Gu, X, Brunzelle, J.S, Xu, H.E, Melcher, K.
Deposit date:2016-04-20
Release date:2017-07-05
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:A D53 repression motif induces oligomerization of TOPLESS corepressors and promotes assembly of a corepressor-nucleosome complex.
Sci Adv, 3, 2017
7JT1
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BU of 7jt1 by Molmil
70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2020-08-16
Release date:2020-11-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:ArfB can displace mRNA to rescue stalled ribosomes
Nat Commun, 11, 2020
7JSS
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BU of 7jss by Molmil
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Carbone, C.E, Korostelev, A.A.
Deposit date:2020-08-15
Release date:2020-11-11
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:ArfB can displace mRNA to rescue stalled ribosomes.
Nat Commun, 11, 2020
6N7O
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BU of 6n7o by Molmil
Crystal structure of GIL01 gp7
Descriptor: GIL01 gp7, IODIDE ION
Authors:Caveney, N.A, Strynadka, N.C.J.
Deposit date:2018-11-27
Release date:2019-05-15
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Insights into Bacteriophage GIL01 gp7 Inhibition of Host LexA Repressor.
Structure, 27, 2019
1SD6
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BU of 1sd6 by Molmil
Crystal Structure of Native MecI at 2.65 A
Descriptor: Methicillin resistance regulatory protein mecI
Authors:Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L.
Deposit date:2004-02-13
Release date:2004-02-24
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons
J.Bacteriol., 187, 2005
5MRU
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BU of 5mru by Molmil
TetR(class A) in complex with 5a,6-anhydrotetracycline and magnesium
Descriptor: 5A,6-ANHYDROTETRACYCLINE, MAGNESIUM ION, Tetracycline Repressor, ...
Authors:Hinrichs, W, Palm, G.J.
Deposit date:2016-12-26
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:TetR(class A) in complex with 5a,6-anhydrotetracycline and magnesium
To Be Published
4UIG
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BU of 4uig by Molmil
Structure of the copper sensitive operon repressor from Streptomyces lividans at pH6
Descriptor: COPPER SENSITIVE OPERON REPRESSOR, SULFATE ION
Authors:Porto, T, Hough, M.A, Worrall, J.A.R.
Deposit date:2015-03-30
Release date:2015-09-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Insights Into Conformational Switching in the Copper Metalloregulator Csor from Streptomyces Lividans
Acta Crystallogr.,Sect.D, 71, 2015
8A0A
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BU of 8a0a by Molmil
Bacillus subtilis SPbeta prophage master regulator MrpR
Descriptor: Bacillus subtilis SPbeta prophage master regulator MrpR
Authors:Czech, L, Bange, G.
Deposit date:2022-05-27
Release date:2023-06-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural and functional characterization of MrpR, the master repressor of the Bacillus subtilis prophage SP beta.
Nucleic Acids Res., 51, 2023

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PDB entries from 2024-08-28

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