Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8YGW
DownloadVisualize
BU of 8ygw by Molmil
The Crystal Structure of MAPK11 from Biortus
Descriptor: 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA, Mitogen-activated protein kinase 11
Authors:Wang, F, Cheng, W, Yuan, Z, Lin, D, Guo, S.
Deposit date:2024-02-27
Release date:2024-03-13
Method:X-RAY DIFFRACTION (3.301 Å)
Cite:The Crystal Structure of MAPK11 from Biortus.
To Be Published
2L6K
DownloadVisualize
BU of 2l6k by Molmil
Solution Structure of a Nonphosphorylated Peptide Recognizing Domain
Descriptor: Tensin-like C1 domain-containing phosphatase
Authors:Dai, K, Liao, S, Zhang, J, Zhang, X, Tu, X.
Deposit date:2010-11-22
Release date:2011-10-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution structure of Tensin2 SH2 domain and its phosphotyrosine-independent interaction with DLC-1
Plos One, 6, 2011
4GRQ
DownloadVisualize
BU of 4grq by Molmil
Characterization of N- and C- terminus mutants of human MIF
Descriptor: 2-methyl-1-[2-(propan-2-yl)pyrazolo[1,5-a]pyridin-3-yl]propan-1-one, CHLORIDE ION, Macrophage migration inhibitory factor, ...
Authors:Fan, C, Lolis, E.
Deposit date:2012-08-26
Release date:2013-10-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Characterization of N- and C- terminus mutants of human MIF
To be Published
6VD2
DownloadVisualize
BU of 6vd2 by Molmil
Crystal structure of Arabidopsis thaliana S-adenosylmethionine Synthase 2 (AtMAT2) in complex with S-adenosylmethionine
Descriptor: 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Sekula, B, Ruszkowski, M, Dauter, Z.
Deposit date:2019-12-23
Release date:2020-02-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:S-adenosylmethionine synthases in plants: Structural characterization of type I and II isoenzymes from Arabidopsis thaliana and Medicago truncatula.
Int.J.Biol.Macromol., 151, 2020
9F5G
DownloadVisualize
BU of 9f5g by Molmil
UP1 in complex with EN300-115958
Descriptor: 1-[(2R)-1-(methanesulfonyl)pyrrolidin-2-yl]methanamine, Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed
Authors:Dunnett, L, Prischi, F.
Deposit date:2024-04-28
Release date:2024-05-08
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Enhanced identification of small molecules binding to hnRNPA1 via cryptic pockets mapping coupled with X-ray fragment screening.
J.Biol.Chem., 301, 2025
6IJL
DownloadVisualize
BU of 6ijl by Molmil
Crystal structure of SmyD3 in complex with covalent inhibitor 5
Descriptor: Histone-lysine N-methyltransferase SMYD3, S-ADENOSYLMETHIONINE, ZINC ION, ...
Authors:Baburajendran, N, Joy, J.
Deposit date:2018-10-10
Release date:2019-08-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.351 Å)
Cite:Discovery of Irreversible Inhibitors Targeting Histone Methyltransferase, SMYD3.
Acs Med.Chem.Lett., 10, 2019
1XC9
DownloadVisualize
BU of 1xc9 by Molmil
Structure of a high-fidelity polymerase bound to a benzo[a]pyrene adduct that blocks replication
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA polymerase I, DNA primer strand, ...
Authors:Hsu, G.W, Huang, X, Luneva, N.P, Geacintov, N.E, Beese, L.S.
Deposit date:2004-09-01
Release date:2004-12-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a High Fidelity DNA Polymerase Bound to a Benzo[a]pyrene Adduct That Blocks Replication
J.Biol.Chem., 280, 2005
7VMT
DownloadVisualize
BU of 7vmt by Molmil
Crystal structure of murine N-acetylglucosaminyl transferase IVa (GnT-IVa) lectin domain in unliganded form
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A soluble form
Authors:Nagae, M.
Deposit date:2021-10-09
Release date:2022-06-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.95000637 Å)
Cite:Discovery of a lectin domain that regulates enzyme activity in mouse N-acetylglucosaminyltransferase-IVa (MGAT4A).
Commun Biol, 5, 2022
1XG2
DownloadVisualize
BU of 1xg2 by Molmil
Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Descriptor: Pectinesterase 1, Pectinesterase inhibitor
Authors:Di Matteo, A, Raiola, A, Camardella, L, Giovane, A, Bonivento, D, De Lorenzo, G, Cervone, F, Bellincampi, D, Tsernoglou, D.
Deposit date:2004-09-16
Release date:2005-03-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis for the Interaction between Pectin Methylesterase and a Specific Inhibitor Protein
Plant Cell, 17, 2005
6I5Z
DownloadVisualize
BU of 6i5z by Molmil
Papaver somniferum O-methyltransferase
Descriptor: O-methyltransferase 1, S-ADENOSYL-L-HOMOCYSTEINE, S-ADENOSYLMETHIONINE
Authors:Davies, G.J, Cabry, M.P, Offen, W.A.
Deposit date:2018-11-15
Release date:2019-03-27
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of Papaver somniferum O-Methyltransferase 1 Reveals Initiation of Noscapine Biosynthesis with Implications for Plant Natural Product Methylation
Acs Catalysis, 2019
4ZOF
DownloadVisualize
BU of 4zof by Molmil
Lobenzarit-like inhibitor bound in the active site of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase (AnPRT; trpD)
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 2-[(2-carboxy-5-nitrophenyl)amino]-3-methylbenzoic acid, Anthranilate phosphoribosyltransferase, ...
Authors:Evans, G.L, Baker, E.N, Lott, J.S, TB Structural Genomics Consortium (TBSGC)
Deposit date:2015-05-06
Release date:2016-05-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Inhibitor bound in the active site of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase (AnPRT; trpD).
To be Published
2L2E
DownloadVisualize
BU of 2l2e by Molmil
Solution NMR structure of myristoylated NCS1p in apo form
Descriptor: Calcium-binding protein NCS-1
Authors:Ames, J, Lim, S.
Deposit date:2010-08-17
Release date:2011-02-02
Last modified:2025-03-26
Method:SOLUTION NMR
Cite:1H, 15N, 13C chemical shift assignments for neuronal calcium sensor-1 from fission yeast (Ncs1p)
To be Published
4ZRR
DownloadVisualize
BU of 4zrr by Molmil
Crystal Structure of Monomeric Bacteriophytochrome mutant D207L Y263F at 1.5 A resolution Using a home source.
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, 3-[2-[(Z)-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E,4R)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bacteriophytochrome, ...
Authors:Bhattacharya, S, Satyshur, K.A, Lehtivuori, H, Forest, K.T.
Deposit date:2015-05-12
Release date:2016-01-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Removal of Chromophore-Proximal Polar Atoms Decreases Water Content and Increases Fluorescence in a Near Infrared Phytofluor.
Front Mol Biosci, 2, 2015
6IL9
DownloadVisualize
BU of 6il9 by Molmil
One Glycerol complexed Crystal structure of fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi
Descriptor: Fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi in complex with 1 glycerol, GLYCEROL, ZINC ION
Authors:Choi, M.Y, Kang, L.W, Ho, T.H, Nguyen, D.Q, Lee, I.H, Lee, J.H, Park, Y.S, Park, H.J.
Deposit date:2018-10-17
Release date:2019-10-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.72005355 Å)
Cite:Crystal structure of fructuronate-tagaturonate epimerase UxaE from Cohnella laeviribosi
To Be Published
4UV4
DownloadVisualize
BU of 4uv4 by Molmil
Crystal structure of anti-FPR Fpro0165 Fab fragment
Descriptor: FPRO0165 FAB
Authors:Douthwaite, J.A, Sridharan, S, Huntington, C, Marwood, R, Hammersley, J, Hakulinen, J.K, Ek, M, Sjogren, T, Rider, D, Privezentzev, C, Seaman, J.C, Cariuk, P, Knights, V, Young, J, Wilkinson, T, Sleeman, M, Finch, D.K, Lowe, D.C, Vaughan, T.J.
Deposit date:2014-08-04
Release date:2014-12-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (3.08 Å)
Cite:Affinity Maturation of a Novel Antagonistic Human Monoclonal Antibody with a Long Vh Cdr3 Targeting the Class a Gpcr Formyl-Peptide Receptor 1.
Mabs, 7, 2015
2LD0
DownloadVisualize
BU of 2ld0 by Molmil
Solution structure of the N-terminal domain of huntingtin (htt17) in 50 % TFE
Descriptor: Huntingtin
Authors:Michalek, M, Salnikov, E.S, Werten, S, Bechinger, B.
Deposit date:2011-05-13
Release date:2012-05-16
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Structure and Topology of the Huntingtin 1-17 Membrane Anchor by a Combined Solution and Solid-State NMR Approach.
Biophys.J., 105, 2013
8XQS
DownloadVisualize
BU of 8xqs by Molmil
Structure of human class T GPCR TAS2R14-DNGi complex with Flufenamic acid.
Descriptor: 2-[[3-(TRIFLUOROMETHYL)PHENYL]AMINO] BENZOIC ACID, CHOLESTEROL, Exo-alpha-sialidase,Taste receptor type 2 member 14,LgBiT, ...
Authors:Hu, X.L, Wu, L.J, Hua, T, Liu, Z.J.
Deposit date:2024-01-05
Release date:2024-07-10
Last modified:2025-07-16
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Bitter taste TAS2R14 activation by intracellular tastants and cholesterol.
Nature, 631, 2024
7UP2
DownloadVisualize
BU of 7up2 by Molmil
NDM1-inhibitor co-structure
Descriptor: (2M)-4'-methyl-2-(2H-tetrazol-5-yl)[1,1'-biphenyl]-3-sulfonamide, Beta-lactamase VIM-1, ZINC ION
Authors:Scapin, G, Fischmann, T.O.
Deposit date:2022-04-14
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates.
J.Med.Chem., 65, 2022
7UP1
DownloadVisualize
BU of 7up1 by Molmil
NDM1-inhibitor co-structure
Descriptor: (2M)-4'-methyl-2-(2H-tetrazol-5-yl)[1,1'-biphenyl]-3-sulfonamide, CADMIUM ION, Metallo beta-lactamase, ...
Authors:Scapin, G, Fischmann, T.O.
Deposit date:2022-04-14
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates.
J.Med.Chem., 65, 2022
7UOX
DownloadVisualize
BU of 7uox by Molmil
NDM1-inhibitor co-structure
Descriptor: (2M)-4'-(hydroxymethyl)-2-(1H-tetrazol-5-yl)[1,1'-biphenyl]-3-ol, ACETATE ION, CADMIUM ION, ...
Authors:Scapin, G, Fischmann, T.O.
Deposit date:2022-04-14
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates.
J.Med.Chem., 65, 2022
9E4W
DownloadVisualize
BU of 9e4w by Molmil
Structure of Bacillus phage SPO1 anti-CBASS 4 (Acb4) in complex with 3'3'-cGAMP
Descriptor: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, anti-CBASS 4 (Acb4)
Authors:Chang, R.B, Toyoda, H.C, Hobbs, S.J, Richmond-Buccola, D, Wein, T, Burger, N, Chouchani, E.T, Sorek, R, Kranzusch, P.J.
Deposit date:2024-10-25
Release date:2025-01-29
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:A widespread family of viral sponge proteins reveals specific inhibition of nucleotide signals in anti-phage defense.
Biorxiv, 2024
7UP3
DownloadVisualize
BU of 7up3 by Molmil
NDM1-inhibitor co-structure
Descriptor: (3P)-4-[4-(hydroxymethyl)phenyl]-3-(2H-tetrazol-5-yl)pyridine-2-sulfonamide, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CADMIUM ION, ...
Authors:Scapin, G, Fischmann, T.O.
Deposit date:2022-04-14
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates.
J.Med.Chem., 65, 2022
4ZLF
DownloadVisualize
BU of 4zlf by Molmil
Cellobionic acid phosphorylase - cellobionic acid complex
Descriptor: 4-O-beta-D-glucopyranosyl-D-gluconic acid, CHLORIDE ION, GLYCEROL, ...
Authors:Nam, Y.W, Arakawa, T, Fushinobu, S.
Deposit date:2015-05-01
Release date:2015-06-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure and Substrate Recognition of Cellobionic Acid Phosphorylase, Which Plays a Key Role in Oxidative Cellulose Degradation by Microbes.
J.Biol.Chem., 290, 2015
7UOY
DownloadVisualize
BU of 7uoy by Molmil
NDM1-inhibitor co-structure
Descriptor: (6P)-4-amino-6-(2H-tetrazol-5-yl)benzene-1,3-disulfonamide, CADMIUM ION, Metallo beta-lactamase, ...
Authors:Scapin, G, Fischmann, T.O.
Deposit date:2022-04-14
Release date:2023-03-08
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Rapid Evolution of a Fragment-like Molecule to Pan-Metallo-Beta-Lactamase Inhibitors: Initial Leads toward Clinical Candidates.
J.Med.Chem., 65, 2022
3BEJ
DownloadVisualize
BU of 3bej by Molmil
Structure of human FXR in complex with MFA-1 and co-activator peptide
Descriptor: (8alpha,10alpha,13alpha,17beta)-17-[(4-hydroxyphenyl)carbonyl]androsta-3,5-diene-3-carboxylic acid, Bile acid receptor, Nuclear receptor coactivator 1, ...
Authors:Soisson, S.M, Parthasarathy, G, Becker, J.W.
Deposit date:2007-11-19
Release date:2008-03-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Identification of a potent synthetic FXR agonist with an unexpected mode of binding and activation.
Proc.Natl.Acad.Sci.Usa, 105, 2008

244349

PDB entries from 2025-11-05

PDB statisticsPDBj update infoContact PDBjnumon