Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4Z4J
DownloadVisualize
BU of 4z4j by Molmil
Crystal Structure of cellobiose 2-epimerase from Caldicellulosiruptor saccharolyticus DSM 8903
Descriptor: 1,2-ETHANEDIOL, Cellobiose 2-epimerase, ISOPROPYL ALCOHOL
Authors:Shen, Q.Y, Zhang, Y.Z.
Deposit date:2015-04-02
Release date:2016-04-13
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.542 Å)
Cite:Crystal Structure of cellobiose 2-epimerase from Caldicellulosiruptor saccharolyticus DSM 8903
to be published
5V5Y
DownloadVisualize
BU of 5v5y by Molmil
CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH MK1775
Descriptor: 1,2-ETHANEDIOL, 1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one, DIMETHYL SULFOXIDE, ...
Authors:ZHU, J.-Y, SCHONBRUNN, E.
Deposit date:2017-03-15
Release date:2017-08-23
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors.
J. Med. Chem., 60, 2017
5V8L
DownloadVisualize
BU of 5v8l by Molmil
BG505 SOSIP.664 trimer in complex with broadly neutralizing HIV antibodies 3BNC117 and PGT145
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3BNC117 antibody, ...
Authors:Lee, J.H, Ward, A.B.
Deposit date:2017-03-22
Release date:2017-05-03
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (4.3 Å)
Cite:A Broadly Neutralizing Antibody Targets the Dynamic HIV Envelope Trimer Apex via a Long, Rigidified, and Anionic beta-Hairpin Structure.
Immunity, 46, 2017
4Y65
DownloadVisualize
BU of 4y65 by Molmil
Crystal structure of E.coli CutA1 C16A/C39A/C79A mutation
Descriptor: Divalent-cation tolerance protein CutA
Authors:Tanaka, T, Matsuura, Y, Yutani, K.
Deposit date:2015-02-12
Release date:2015-04-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of E.coli CutA1 C16A/C39A/C79A mutation
To Be Published
5VBZ
DownloadVisualize
BU of 5vbz by Molmil
Crystal Structure of Small Molecule Disulfide 2C07 Bound to H-Ras M72C GppNHp
Descriptor: 1-(4-methoxyphenyl)-N-(3-sulfanylpropyl)-5-(trifluoromethyl)-1H-pyrazole-4-carboxamide, GTPase HRas, MAGNESIUM ION, ...
Authors:Gentile, D.R, Jenkins, M.L, Moss, S.M, Burke, J.E, Shokat, K.M.
Deposit date:2017-03-30
Release date:2017-10-25
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ras Binder Induces a Modified Switch-II Pocket in GTP and GDP States.
Cell Chem Biol, 24, 2017
7LV9
DownloadVisualize
BU of 7lv9 by Molmil
Marseillevirus heterotrimeric (hexameric) nucleosome
Descriptor: DNA (96-MER), Histone doublet Beta-Alpha (Alpha), Histone doublet Beta-Alpha (Beta), ...
Authors:Valencia-Sanchez, M.I, Abini-Agbomson, S, Armache, K.-J.
Deposit date:2021-02-24
Release date:2021-05-05
Last modified:2021-05-26
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:The structure of a virus-encoded nucleosome.
Nat.Struct.Mol.Biol., 28, 2021
7LV8
DownloadVisualize
BU of 7lv8 by Molmil
Structure of the Marseillevirus nucleosome
Descriptor: DNA (123-MER), Histone doublet Beta-Alpha (Alpha), Histone doublet Beta-Alpha (Beta), ...
Authors:Valencia-Sanchez, M.I, Abini-Agbomson, S, Armache, K.-J.
Deposit date:2021-02-24
Release date:2021-05-05
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:The structure of a virus-encoded nucleosome.
Nat.Struct.Mol.Biol., 28, 2021
7VHV
DownloadVisualize
BU of 7vhv by Molmil
Crystal structure of S. aureus D-alanine alanyl carrier protein ligase
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, D-alanine--D-alanyl carrier protein ligase, MAGNESIUM ION
Authors:Lee, B.J, Lee, I.-G, Im, H.G, Yoon, H.J.
Deposit date:2021-09-23
Release date:2022-04-13
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and functional analysis of the D-alanyl carrier protein ligase DltA from Staphylococcus aureus Mu50.
Acta Crystallogr D Struct Biol, 78, 2022
5WMO
DownloadVisualize
BU of 5wmo by Molmil
Crystal Structure of HLA-B7 in complex with RPP, an EBV peptide
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, B-7 alpha chain, ...
Authors:Gras, S, Rossjohn, J.
Deposit date:2017-07-30
Release date:2018-06-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Inability To Detect Cross-Reactive Memory T Cells Challenges the Frequency of Heterologous Immunity among Common Viruses.
J. Immunol., 200, 2018
7V1L
DownloadVisualize
BU of 7v1l by Molmil
Structure of sNASP core in complex with H3 alpha3 helix peptide
Descriptor: H3 alpha3 helix peptide, Isoform 2 of Nuclear autoantigenic sperm protein
Authors:Bao, H, Huang, H.
Deposit date:2021-08-04
Release date:2022-04-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.849 Å)
Cite:NASP maintains histone H3-H4 homeostasis through two distinct H3 binding modes.
Nucleic Acids Res., 50, 2022
7LYJ
DownloadVisualize
BU of 7lyj by Molmil
SARS-CoV-2 frameshifting pseudoknot RNA
Descriptor: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Jones, C.P, Ferre-D'Amare, A.R.
Deposit date:2021-03-07
Release date:2021-05-26
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot.
Rna, 28, 2022
7VB2
DownloadVisualize
BU of 7vb2 by Molmil
Solution structure of human ribosomal protein uL11
Descriptor: 60S ribosomal protein L12
Authors:Lee, K.M, Wong, K.B.
Deposit date:2021-08-30
Release date:2022-04-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The flexible N-terminal motif of uL11 unique to eukaryotic ribosomes interacts with P-complex and facilitates protein translation.
Nucleic Acids Res., 50, 2022
5WOX
DownloadVisualize
BU of 5wox by Molmil
NMR solution structure of KanY protein (ms6282) using two 4D-spectra
Descriptor: Uncharacterized protein
Authors:Evangelidis, T, Nerli, S, Sgourakis, N.G, Tripsianes, K.
Deposit date:2017-08-03
Release date:2018-02-07
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.
Nat Commun, 9, 2018
7LLK
DownloadVisualize
BU of 7llk by Molmil
Cryo-EM structure of Q23.17_DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody 179NC75 Fab
Descriptor: 179NC75 Fab Heavy chain, 179NC75 Fab Light chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Manne, K, Acharya, P.
Deposit date:2021-02-04
Release date:2021-06-02
Last modified:2021-11-17
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural basis of glycan276-dependent recognition by HIV-1 broadly neutralizing antibodies.
Cell Rep, 37, 2021
4YAZ
DownloadVisualize
BU of 4yaz by Molmil
3',3'-cGAMP riboswitch bound with 3',3'-cGAMP
Descriptor: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Ren, A.M, Patel, D.J, Rajashankar, R.K.
Deposit date:2015-02-18
Release date:2015-04-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Basis for Molecular Discrimination by a 3',3'-cGAMP Sensing Riboswitch.
Cell Rep, 11, 2015
5WTD
DownloadVisualize
BU of 5wtd by Molmil
Structure of human serum transferrin bound ruthenium at N-lobe
Descriptor: FE (III) ION, MALONATE ION, RUTHENIUM ION, ...
Authors:Sun, H, Wang, M, Lai, T.P, Zhang, H, Hao, Q.
Deposit date:2016-12-11
Release date:2017-12-20
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.501 Å)
Cite:Binding of ruthenium and osmium at non‐iron sites of transferrin accounts for their iron-independent cellular uptake.
J.Inorg.Biochem., 234, 2022
4YJ5
DownloadVisualize
BU of 4yj5 by Molmil
Crystal structure of PKM2 mutant
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, MAGNESIUM ION, PYRUVIC ACID, ...
Authors:Liu, J.-S, Wu, C.-W, Wang, W.-C.
Deposit date:2015-03-03
Release date:2016-03-09
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Mutations in the PKM2 exon-10 region are associated with reduced allostery and increased nuclear translocation
Commun Biol, 2, 2019
4YL5
DownloadVisualize
BU of 4yl5 by Molmil
Structure of a putative phosphomethylpyrimidine kinase from Acinetobacter baumannii
Descriptor: 1,2-ETHANEDIOL, Putative phosphomethylpyrimidine kinase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2015-03-04
Release date:2015-04-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Characterization of an Acinetobacter baumannii Monofunctional Phosphomethylpyrimidine Kinase That Is Inhibited by Pyridoxal Phosphate.
Biochemistry, 2024
4YMC
DownloadVisualize
BU of 4ymc by Molmil
Lambda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGATCCGG)2
Descriptor: BARIUM ION, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*GP*AP*TP*CP*CP*GP*G)-3'), ...
Authors:Gurung, S.P, Hall, J.P, Cardin, C.J.
Deposit date:2015-03-06
Release date:2016-03-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Reversal of a single base pair step controls guanine photo-oxidation by an intercalating Ru(II) dipyridophenazine complex.
To Be Published
4YMU
DownloadVisualize
BU of 4ymu by Molmil
Crystal structure of an amino acid ABC transporter complex with arginines and ATPs
Descriptor: ABC-type amino acid transport system, permease component, ABC-type polar amino acid transport system, ...
Authors:Ge, J, Yu, J, Yang, M.
Deposit date:2015-03-07
Release date:2015-04-22
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Structural basis for substrate specificity of an amino acid ABC transporter
Proc.Natl.Acad.Sci.USA, 112, 2015
4YP1
DownloadVisualize
BU of 4yp1 by Molmil
Misting with CDA
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Stimulator of interferon genes protein
Authors:Chin, K.H, Chen, C.K, Tu, Z.I, Chou, S.H.
Deposit date:2015-03-12
Release date:2015-10-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structural Insights into the Distinct Binding Mode of Cyclic Di-AMP with SaCpaA_RCK.
Biochemistry, 54, 2015
5UZG
DownloadVisualize
BU of 5uzg by Molmil
Crystal structure of Glorund qRRM1 domain
Descriptor: AT27789p, GLYCEROL, SULFATE ION
Authors:Teramoto, T, Hall, T.M.T.
Deposit date:2017-02-26
Release date:2017-03-22
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.541 Å)
Cite:The Drosophila hnRNP F/H Homolog Glorund Uses Two Distinct RNA-Binding Modes to Diversify Target Recognition.
Cell Rep, 19, 2017
4ZDP
DownloadVisualize
BU of 4zdp by Molmil
The crystal structure of Y334C mutant of human SepSecS in complex with selenocysteine tRNA (tRNASec)
Descriptor: (5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE, O-phosphoseryl-tRNA(Sec) selenium transferase, PHOSPHATE ION, ...
Authors:French, R.L, Simonovic, M.
Deposit date:2015-04-17
Release date:2016-04-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Structural basis for early-onset neurological disorders caused by mutations in human selenocysteine synthase.
Sci Rep, 6, 2016
4ZEF
DownloadVisualize
BU of 4zef by Molmil
Crystal structure of substrate binding domain 2 (SBD2) OF ABC transporter GLNPQ from Enterococcus faecalis
Descriptor: Amino acid ABC transporter amino acid-binding/permease, GLUTAMINE
Authors:Fulyani, F, Guskov, A, Poolman, B.
Deposit date:2015-04-20
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of substrate binding domain 2 (SBD2) OF ABC transporter GLNPQ from Enterococcus faecalis
To Be Published
7X8U
DownloadVisualize
BU of 7x8u by Molmil
Crystal structure of the N-terminal Solanaceae domain of the Sw-5b NLR immune receptor
Descriptor: Tospovirus resistance protein B
Authors:Li, J, Xin, J, Xing, W, Tao, X.
Deposit date:2022-03-14
Release date:2023-03-22
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Crystal structure of the N-terminal Solanaceae domain of the Sw-5b NLR immune receptor
To Be Published

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon