PDB: 36840 resultsInfo pagesStatus searchChemie searchBIRD

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8A66	Crystal structure of MST2 in complex with XMU-MP-1 Descriptor: 4-[(5,10-dimethyl-6-oxo-6,10-dihydro-5H-pyrimido[5,4-b]thieno[3,2-e][1,4]diazepin-2-yl)amino]benzenesulfonamide, SODIUM ION, Serine/threonine-protein kinase 3 36kDa subunit Authors: Nawrotek, A, Vuillard, L, Miallau, L, Weber, C. Deposit date: 2022-06-16 Release date: 2022-07-20 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (1.901 Å) Cite: Crystal structure of the Kelch domain of human Keap1in complex with ligand S217879 To Be Published
7Y53	The cryo-EM structure of human ERAD retro-translocation complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, Derlin-1, Transitional endoplasmic reticulum ATPase Authors: Cao, Y, Rao, B, Wang, Q, Yao, D, Xia, Y, Li, W, Li, S, Shen, Y. Deposit date: 2022-06-16 Release date: 2023-10-18 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.61 Å) Cite: The cryo-EM structure of the human ERAD retrotranslocation complex. Sci Adv, 9, 2023
7Y59	The cryo-EM structure of human ERAD retro-translocation complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Derlin-1, ... Authors: Cao, Y, Rao, B, Wang, Q, Yao, D, Xia, Y, Li, W, Li, S, Shen, Y. Deposit date: 2022-06-16 Release date: 2023-10-18 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (4.51 Å) Cite: The cryo-EM structure of the human ERAD retrotranslocation complex. Sci Adv, 9, 2023
7Y4W	The cryo-EM structure of human ERAD retro-translocation complex Descriptor: ADENOSINE-5'-DIPHOSPHATE, Derlin-1, Transitional endoplasmic reticulum ATPase Authors: Cao, Y, Rao, B, Wang, Q, Yao, D, Xia, Y, Li, W, Li, S, Shen, Y. Deposit date: 2022-06-16 Release date: 2023-10-18 Last modified: 2024-04-03 Method: ELECTRON MICROSCOPY (3.67 Å) Cite: The cryo-EM structure of the human ERAD retrotranslocation complex. Sci Adv, 9, 2023
8A5J	Crystal structure of Human STE20-like kinase 1, MST1 in complex with compound XMU-MP-1 Descriptor: 4-[(5,10-dimethyl-6-oxo-6,10-dihydro-5H-pyrimido[5,4-b]thieno[3,2-e][1,4]diazepin-2-yl)amino]benzenesulfonamide, Serine/threonine-protein kinase 4 37kDa subunit Authors: Nawrotek, A, Vuillard, L, Miallau, L. Deposit date: 2022-06-15 Release date: 2022-07-13 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (2.123 Å) Cite: Crystal structure of the Kelch domain of human Keap1in complex with ligand S217879 To Be Published
8A5Q	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 on straight DNA Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, Actin related protein 4 (Arp4), ... Authors: Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. Deposit date: 2022-06-15 Release date: 2022-12-14 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
8A5P	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 on curved DNA Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, Actin related protein 4 (Arp4), ... Authors: Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. Deposit date: 2022-06-15 Release date: 2022-12-14 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
8A5O	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of S. cerevisiae INO80 Descriptor: Actin, Actin-like protein ARP8, Actin-related protein 4, ... Authors: Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. Deposit date: 2022-06-15 Release date: 2022-12-14 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
8DC0	Rat Betaglycan Zona Pellucida Domain (ZPC) in complex with mini monomer TGFb2 (mmTGF-b2-7M2R) Descriptor: Transforming growth factor beta receptor type 3, Transforming growth factor beta-2 Authors: Wieteska, L, Taylor, A.B, Hinck, A.P. Deposit date: 2022-06-15 Release date: 2023-06-21 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Rat Betaglycan Zona Pellucida Domain (ZPC) in complex with mini monomer TGFb2 (mmTGF-b2-7M2R) To Be Published
7Y4N	Insight into the C-terminal SH3 domain mediated binding of Drosophila Drk to Sos and Dos Descriptor: Growth factor receptor-bound protein 2 Authors: Pooppadi, M.S, Ikeya, T, Sugasawa, H, Watanabe, R, Mishima, M, Inomata, K, Ito, Y. Deposit date: 2022-06-15 Release date: 2022-08-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Insight into the C-terminal SH3 domain mediated binding of Drosophila Drk to Sos and Dos. Biochem.Biophys.Res.Commun., 625, 2022
8A5A	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of INO80 Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, Actin-like protein ARP8, ... Authors: Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. Deposit date: 2022-06-14 Release date: 2022-12-14 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
8A5D	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 Descriptor: Actin, Actin related protein 4 (Arp4), Actin-related protein 8, ... Authors: Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. Deposit date: 2022-06-14 Release date: 2022-12-28 Last modified: 2024-07-24 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
8A58	X-ray structure of TRIM21 RING E3 ligase in complex with E2 enzyme Ube2W Descriptor: E3 ubiquitin-protein ligase TRIM21, Ubiquitin-conjugating enzyme E2 W, ZINC ION Authors: James, L.C, Kiss, L. Deposit date: 2022-06-14 Release date: 2023-04-26 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Trim-Away ubiquitinates and degrades lysine-less and N-terminally acetylated substrates. Nat Commun, 14, 2023
8DAW	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uD) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... Authors: Lee, H.G, Lima, C.D. Deposit date: 2022-06-14 Release date: 2022-11-30 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAU	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two folded ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (uA) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... Authors: Lee, H.G, Lima, C.D. Deposit date: 2022-06-14 Release date: 2022-11-30 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAR	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex unbound but in the presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... Authors: Lee, H.G, Lima, C.D. Deposit date: 2022-06-14 Release date: 2022-11-30 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAT	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intB) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... Authors: Lee, H.G, Lima, C.D. Deposit date: 2022-06-14 Release date: 2022-11-30 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAS	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 1 (intA) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... Authors: Lee, H.G, Lima, C.D. Deposit date: 2022-06-14 Release date: 2022-11-30 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DAV	Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties and one unfolded ubiquitin in presence of SUMO-ubiquitin(K48polyUb)-mEOS and ATP, state 2 (uC) Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... Authors: Lee, H.G, Lima, C.D. Deposit date: 2022-06-14 Release date: 2022-11-30 Last modified: 2023-01-11 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: SUMO enhances unfolding of SUMO-polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8DBR	E. coli ATP synthase imaged in 10mM MgATP State2 "half-up Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Sobti, M, Stewart, A.G. Deposit date: 2022-06-14 Release date: 2023-01-25 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBT	E. coli ATP synthase imaged in 10mM MgATP State2 "down Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Sobti, M, Stewart, A.G. Deposit date: 2022-06-14 Release date: 2023-01-25 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBP	E. coli ATP synthase imaged in 10mM MgATP State1 "half-up Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Sobti, M, Stewart, A.G. Deposit date: 2022-06-14 Release date: 2023-01-25 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBS	E. coli ATP synthase imaged in 10mM MgATP State2 "half-up" Fo classified Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Sobti, M, Stewart, A.G. Deposit date: 2022-06-14 Release date: 2023-01-25 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBW	E. coli ATP synthase imaged in 10mM MgATP State3 "down" Fo classified Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Sobti, M, Stewart, A.G. Deposit date: 2022-06-14 Release date: 2023-01-25 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8DBU	E. coli ATP synthase imaged in 10mM MgATP State2 "down" Fo classified Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Sobti, M, Stewart, A.G. Deposit date: 2022-06-14 Release date: 2023-01-25 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023

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