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7C1X
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BU of 7c1x by Molmil
Unliganded structure of Pseudouridine kinase (PUKI) from Arabidopsis thaliana
Descriptor: PfkB-like carbohydrate kinase family protein, SODIUM ION
Authors:Kim, S.H, Rhee, S.
Deposit date:2020-05-06
Release date:2020-11-18
Last modified:2021-06-02
Method:X-RAY DIFFRACTION (2.38942838 Å)
Cite:Structural basis for the substrate specificity and catalytic features of pseudouridine kinase from Arabidopsis thaliana.
Nucleic Acids Res., 49, 2021
6LZ2
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BU of 6lz2 by Molmil
Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb44)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, GLYCEROL, ...
Authors:Cai, H, Yao, H, Li, T, Hutter, C, Tang, Y, Li, Y, Seeger, M, Li, D.
Deposit date:2020-02-17
Release date:2020-12-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:An improved fluorescent tag and its nanobodies for membrane protein expression, stability assay, and purification.
Commun Biol, 3, 2020
6C9P
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BU of 6c9p by Molmil
Mycobacterium tuberculosis adenosine kinase bound to 6-methylmercaptopurine riboside
Descriptor: 2-HYDROXYMETHYL-5-(6-METHYLSULFANYL-PURIN-9-YL)-TETRAHYDRO-FURAN-3,4-DIOL, Adenosine kinase, GLYCEROL, ...
Authors:Crespo, R.A, TB Structural Genomics Consortium (TBSGC)
Deposit date:2018-01-28
Release date:2019-05-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Guided Drug Design of 6-Substituted Adenosine Analogues as Potent Inhibitors of Mycobacterium tuberculosis Adenosine Kinase.
J.Med.Chem., 62, 2019
4KLM
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BU of 4klm by Molmil
DNA polymerase beta matched product complex with Mg2+, 11 h
Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Freudenthal, B.D, Beard, W.A, Shock, D.D, Wilson, S.H.
Deposit date:2013-05-07
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.747 Å)
Cite:Observing a DNA polymerase choose right from wrong.
Cell(Cambridge,Mass.), 154, 2013
6BRI
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BU of 6bri by Molmil
RHCC with unreduced and reduced Mercury complexes
Descriptor: GLYCEROL, IODIDE ION, MERCURY (II) IODIDE, ...
Authors:McDougall, M, Trieu, B, Stetefeld, J.
Deposit date:2017-11-30
Release date:2018-02-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.266 Å)
Cite:Reductive power of the archaea right-handed coiled coil nanotube (RHCC-NT) and incorporation of mercury clusters inside protein cages.
J. Struct. Biol., 203, 2018
7C1Y
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BU of 7c1y by Molmil
Pseudouridine and ADP bound structure of Pseudouridine kinase (PUKI) from Arabidopsis thaliana
Descriptor: 5-[(2~{S},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1~{H}-pyrimidine-2,4-dione, ADENOSINE-5'-DIPHOSPHATE, PfkB-like carbohydrate kinase family protein, ...
Authors:Kim, S.H, Rhee, S.
Deposit date:2020-05-06
Release date:2020-11-18
Last modified:2021-06-02
Method:X-RAY DIFFRACTION (2.083426 Å)
Cite:Structural basis for the substrate specificity and catalytic features of pseudouridine kinase from Arabidopsis thaliana.
Nucleic Acids Res., 49, 2021
6N6K
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BU of 6n6k by Molmil
Human REXO2 bound to pAG
Descriptor: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ...
Authors:Lormand, J.D, Sondermann, H.
Deposit date:2018-11-26
Release date:2019-06-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.418 Å)
Cite:A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation.
Elife, 8, 2019
4KKX
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BU of 4kkx by Molmil
Crystal structure of Tryptophan Synthase from Salmonella typhimurium with 2-aminophenol quinonoid in the beta site and the F6 inhibitor in the alpha site
Descriptor: 1,2-ETHANEDIOL, 2-{[4-(TRIFLUOROMETHOXY)BENZOYL]AMINO}ETHYL DIHYDROGEN PHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Hilario, E, Niks, D, Dunn, M.F, Mueller, L.J, Fan, L.
Deposit date:2013-05-06
Release date:2014-01-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Allostery and substrate channeling in the tryptophan synthase bienzyme complex: evidence for two subunit conformations and four quaternary states.
Biochemistry, 52, 2013
4KNK
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BU of 4knk by Molmil
Crystal structure of Staphylococcus aureus hydrolase AmiA
Descriptor: 1,2-ETHANEDIOL, Bifunctional autolysin, DI(HYDROXYETHYL)ETHER, ...
Authors:Buettner, F.M, Zoll, S, Stehle, T.
Deposit date:2013-05-10
Release date:2014-03-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.124 Å)
Cite:Structure-function analysis of Staphylococcus aureus amidase reveals the determinants of peptidoglycan recognition and cleavage.
J.Biol.Chem., 289, 2014
6C67
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BU of 6c67 by Molmil
Mycobacterium tuberculosis adenosine kinase bound to iodotubercidin
Descriptor: (2R,3R,4S,5R)-2-(4-AMINO-5-IODO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL)-5-(HYDROXYMETHYL)TETRAHYDROFURAN-3,4-DIOL, Adenosine kinase, GLYCEROL, ...
Authors:Crespo, R.A, TB Structural Genomics Consortium (TBSGC)
Deposit date:2018-01-17
Release date:2019-05-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Structure-Guided Drug Design of 6-Substituted Adenosine Analogues as Potent Inhibitors of Mycobacterium tuberculosis Adenosine Kinase.
J.Med.Chem., 62, 2019
6MSX
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BU of 6msx by Molmil
Iron containing ferritin at 1.43A
Descriptor: 1,2-ETHANEDIOL, CADMIUM ION, Ferritin light chain, ...
Authors:Blackburn, A, Partowmah, S.H, Brennan, H.M, Mestizo, K.E, Stivala, C.D, Petreczky, J, Perez, A, Horn, A, McSweeney, S.
Deposit date:2018-10-18
Release date:2018-12-19
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:A simple technique to improve microcrystals using gel exclusion of nucleation inducing elements
To Be Published
6MBN
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BU of 6mbn by Molmil
LptB E163Q in complex with ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, Lipopolysaccharide export system ATP-binding protein LptB, ...
Authors:Owens, T.W, Ruiz, N, Kahne, D.
Deposit date:2018-08-30
Release date:2019-08-14
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.957 Å)
Cite:Combining Mutations That Inhibit Two Distinct Steps of the ATP Hydrolysis Cycle Restores Wild-Type Function in the Lipopolysaccharide Transporter and Shows that ATP Binding Triggers Transport.
Mbio, 10, 2019
4KLI
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BU of 4kli by Molmil
DNA polymerase beta matched product complex with Mg2+, 90 s
Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*CP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Freudenthal, B.D, Beard, W.A, Shock, D.D, Wilson, S.H.
Deposit date:2013-05-07
Release date:2013-07-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.597 Å)
Cite:Observing a DNA polymerase choose right from wrong.
Cell(Cambridge,Mass.), 154, 2013
7BYF
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BU of 7byf by Molmil
The crystal structure of mouse ORF10-Rae1-Nup98 complex
Descriptor: 10 protein, MERCURY (II) ION, Peptidase S59 domain-containing protein, ...
Authors:Gao, P, Feng, H.
Deposit date:2020-04-22
Release date:2021-03-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Molecular mechanism underlying selective inhibition of mRNA nuclear export by herpesvirus protein ORF10.
Proc.Natl.Acad.Sci.USA, 117, 2020
6C9V
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BU of 6c9v by Molmil
Mycobacterium tuberculosis adenosine kinase bound to (2R,3S,4R,5R)-2-(hydroxymethyl)-5-(6-(4-phenylpiperazin-1-yl)-9H-purin-9-yl)tetrahydrofuran-3,4-diol
Descriptor: (2R,3S,4R,5R)-2-(hydroxymethyl)-5-[6-(4-phenylpiperazin-1-yl)-9H-purin-9-yl]tetrahydrofuran-3,4-diol, Adenosine kinase, GLYCEROL, ...
Authors:Crespo, R.A, TB Structural Genomics Consortium (TBSGC)
Deposit date:2018-01-28
Release date:2019-05-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure-Guided Drug Design of 6-Substituted Adenosine Analogues as Potent Inhibitors of Mycobacterium tuberculosis Adenosine Kinase.
J.Med.Chem., 62, 2019
6N2S
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BU of 6n2s by Molmil
Ternary complex crystal structure of DNA polymerase Beta with 5-carboxy-dC (5-caC) at the templating position
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(1CC)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), ...
Authors:Batra, V.K, Wilson, S.H.
Deposit date:2018-11-14
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.457 Å)
Cite:Molecular basis for the faithful replication of 5-methylcytosine and its oxidized forms by DNA polymerase beta.
J.Biol.Chem., 294, 2019
6CFQ
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BU of 6cfq by Molmil
Crystal structure of the D141N variant of catalase-peroxidase from B. pseudomallei with INH bound
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Catalase-peroxidase, ...
Authors:Loewen, P.C.
Deposit date:2018-02-16
Release date:2018-02-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of the D141N variant of catalase-peroxidase from B. pseudomallei with INH bound
To be published
1G29
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BU of 1g29 by Molmil
MALK
Descriptor: 1,4-DIETHYLENE DIOXIDE, AMMONIUM ION, CHLORIDE ION, ...
Authors:Diederichs, K, Diez, J, Greller, G, Mueller, C, Breed, J, Schnell, C, Vonrhein, C, Boos, W, Welte, W.
Deposit date:2000-10-18
Release date:2000-12-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of MalK, the ATPase subunit of the trehalose/maltose ABC transporter of the archaeon Thermococcus litoralis.
EMBO J., 19, 2000
4O50
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BU of 4o50 by Molmil
Crystal Structure of Trichomonas vaginalis Triosephosphate Isomerase Ile45-Ala mutant (Tvag_497370)
Descriptor: SODIUM ION, Triosephosphate isomerase
Authors:Lara-Gonzalez, S, Benitez-Cardoza, C.G, Brieba, L.G.
Deposit date:2013-12-19
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Engineering mutants with altered dimer-monomer equilibrium reveal the existence of stable monomeric Triosephosphate isomerases
To be Published
4O54
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BU of 4o54 by Molmil
Crystal Structure of Trichomonas vaginalis Triosephosphate Isomerase Ile45-Phe mutant (Tvag_497370)
Descriptor: SODIUM ION, Triosephosphate isomerase
Authors:Lara-Gonzalez, S, Benitez-Cardoza, C.G, Brieba, L.G.
Deposit date:2013-12-19
Release date:2014-12-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Engineering mutants with altered dimer-monomer equilibrium reveal the existence of stable monomeric Triosephosphate isomerases
To be Published
3R3K
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BU of 3r3k by Molmil
Crystal structure of a parallel 6-helix coiled coil
Descriptor: 1,2-ETHANEDIOL, CChex-Phi22 helix, CHLORIDE ION, ...
Authors:Zaccai, N.R, Chi, B.H.C, Woolfson, D.N, Brady, R.L.
Deposit date:2011-03-16
Release date:2011-11-16
Last modified:2011-11-30
Method:X-RAY DIFFRACTION (2.2009 Å)
Cite:A de novo peptide hexamer with a mutable channel.
Nat.Chem.Biol., 7, 2011
6LT9
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BU of 6lt9 by Molmil
The crystal structure of diamondback moth ryanodine receptor SPRY1 domain
Descriptor: GLYCEROL, Ryanodine receptor 1, SODIUM ION
Authors:Zhou, Y, Lin, L, Yuchi, Z.
Deposit date:2020-01-22
Release date:2021-01-27
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:The crystal structure of diamondback moth ryanodine receptor SPRY1 domain
To Be Published
6CEK
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BU of 6cek by Molmil
Crystal structure of the D141N variant of catalase-peroxidase from B. pseudomallei
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, Catalase-peroxidase, ...
Authors:Loewen, P.C.
Deposit date:2018-02-12
Release date:2018-02-21
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the D141N variant of catalase-peroxidase from B. pseudomallei
To be published
5ZPD
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BU of 5zpd by Molmil
Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 288 K (1)
Descriptor: COPPER (II) ION, Phenylethylamine oxidase, SODIUM ION
Authors:Murakawa, T, Baba, S, Kawano, Y, Hayashi, H, Yano, T, Tanizawa, K, Kumasaka, T, Yamamoto, M, Okajima, T.
Deposit date:2018-04-16
Release date:2018-12-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.665 Å)
Cite:In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
4OGL
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BU of 4ogl by Molmil
X-ray structure uridine phosphorylase from Vibrio cholerae in complex with thymine at 1.25 A resolution
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ...
Authors:Prokofev, I.I, Lashkov, A.A, Gabdoulkhakov, A.G, Betzel, C, Mikhailov, A.M.
Deposit date:2014-01-16
Release date:2015-03-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.249 Å)
Cite:X-ray structure uridine phosphorylase from Vibrio cholerae in complex with thymine at 1.25 A resolution
Crystallogr. Rep., 2016

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PDB entries from 2024-09-11

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